TCONS_00017321 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00017321
Unique Name	TCONS_00017321
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1408

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000264:360182..363992-
coding sequence from alignment at sc0000264:360182..363992-

transcript sequence

>TCONS_00017321 ID=TCONS_00017321|Name=TCONS_00017321|organism=Clytia hemisphaerica|type=transcript|length=1408bp
TAAAAGTGATCAATTTTCTCCGAAGGGGAAAGGAAGCACTTCAGAAAAAA
ACCCATTGACAAAAAGattgttttaattaaatttgCTAAAATGAAATCTT
TGTCTTCCTTTTTAGATGATCTTTATGGTACTGTTTTGTATGGTCACTTG
GACTGCAGTTGGCTTGGATTGGGTTGGGTCTGGTTATTTGTTGTCAAACT
ATTTTGTTGTACTGATTGGTATTTGGGCTGAATACGACAAAATCTCTCCT
GTTCCTGTACAAATTTTTTTCTTTGGAATGCTTTTCACATTGCTAAACGA
TATTATCAATATTGGAGTACGATTTGAAGGAAGTAAAAATGGTGCCAAGG
CTgGTGGTGTTTACAATACATTTAATTTCAACGCAACATGTTATATCCTT
TTAATTTTGGTGAAACCAGTTGcttctttatttatttacaaagaATGGTC
TTTCAGagTCAACAGTGACGAAGGAGAAGGACAGGCTCCAAATGCATCTG
CTTACGAACGTTTAGATCAAAACAATGGAGGCGGAGCATATGGCGGTTAT
GGTGGAGCCAAGGATCAACCACCTCAATACCAGCCACCTCAGCAGCCCTT
TCCGTAAACCTCACGGTGTTTATGAACTGTCATGGATGCCTTTAGAATAC
TCACTATACCAAAACACTTCATTttcttaaaactttttgatatttGACAA
CGCTTTTGTAACCTCTGTTAATTGCACTATGTTAGTATTTTGTTCTTGTA
GCTAGATAGTTTTGGTACTAAGGACTATTTCCTAAGTTCCAGAGGTTTAA
CAAATAGTTGGTCCTCCATCATGTTGTTGCGGGATATTCAAGAAGTTAAT
TCAACAACACTTTAACCTAAAACCTTTCCAAGGCCAtttgtaaaattctt
taaaaagacTGGAATTGCCCTGAATCTTTCTTTGAATTTAGTTCCTTTGT
CTTTAACAGttcaaaggtttttttaagtTGTTAATGTGTAATCATTCATC
TATGTTCTGTAATCATATATAAttgttttactttaaatttgcactattta
tgttttttttgtattacTGTATGCATATTTTTTACCATGGCATTGTTTTT
GCTTCTCAAGGAATGGGAAGGACTTTACATTCTagttaaattttcaaata
ttcagCCACTAATTTCAGCcaaattctttttgattttgaggTTCTTTTTC
TTCTGGAATTGACATTATTACAGCCCTGTGAAtccaggtcggcattcggc
aatGCCGACTTGAAAGCCCACGTAAGTTGAGCTGAAGTCGGCTTTTATTT
GCCAACGTAATTTACACTCTAGGTCGGCGTGccgacaaaagaaatgtttt
gggtcggcaaagctgacctaaagaggaaaaatattatttgttaggttaat
cTAATTNN

Run BLAST on NCBI

protein sequence of TCONS_00017321-protein

>TCONS_00017321-protein ID=TCONS_00017321-protein|Name=TCONS_00017321-protein|organism=Clytia hemisphaerica|type=polypeptide|length=163bp
MIFMVLFCMVTWTAVGLDWVGSGYLLSNYFVVLIGIWAEYDKISPVPVQI
FFFGMLFTLLNDIINIGVRFEGSKNGAKAGGVYNTFNFNATCYILLILVK
PVASLFIYKEWSFRVNSDEGEGQAPNASAYERLDQNNGGGAYGGYGGAKD
QPPQYQPPQQPFP

Run BLAST on NCBI

transcript from alignment at sc0000264:360182..363992-

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00017321 ID=TCONS_00017321|Name=TCONS_00017321|organism=Clytia hemisphaerica|type=transcript|length=3811bp|location=Sequence derived from alignment at sc0000264:360182..363992- (Clytia hemisphaerica)
TAAAAGTGATCAATTTTCTCCGAAGGGGAAAGGAAGCACTTCAGAAAAAA
ACCCATTGACAAAAAGATTGTTTTAATTAAATTTGCTAAAATGAAATCTT
TGTCTTCCTTTTTAGATGATCTTTATGGTACTGTTTTGTATGGTCACTTG
GTAAGTTTTTTCTTGTATTGAATTTTTGAATTTTTTATACTACAGAAAAT
TTCAATGTAAGTTTTGGTGTCTTTGCTGTTTTTTTCAAGTTAGCAAAGCA
ATTTGTTGAATGAGTTGAAAAAAAGCCCCCCCCCCTCACAACCTATTGGC
ACCGTCGCAAATGTCGACATAAATCTAGCTTTTGTCAACGTTGTTTCTGT
ATCAGTATTAATATTTTTAAAGTAAAACTTATCTCTTCAAATTTTAGGAC
TGCAGTTGGCTTGGATTGGGTTGGGTCTGGTTATTTGTTGTCAAACTATT
TTGTTGTACTGATTGGTATTTGGGCTGAATACGACAAAATCTCTCCTGTT
CCTGTACAAATTGTATGATTCCTTTAAAATTCAATCACACTAAAATATTG
GTAATAACAGCCTTTTTAGTGGAAAAACACTGGAAAAAGTGCCCTTTTTG
GCCACCAACGGAGGACACTGCCTTGCCTTTATAAAATATGGCCTGTTTTA
TTGACAAGTCTTTCAAAAGATAAAACATTCACTTAGGTCACATTTTTAAA
ACAAGTTCGTCGATGACAACTACTAGTACTAATGATATCATTTGCATCTG
TTTAGTTTTTCTTTGGAATGCTTTTCACATTGCTAAACGATATTATCAAT
ATTGGAGTACGATTTGAAGGAAGTAAAAATGGTGCCAAGGCTGGTAAATA
TATTTTGAATTAAAGTCATATGTCAAAGTTTGTTTATTTTGCTATTAGGC
AAATTTGAGTAGCTGTCTACCTGAAGGTAGGGACGTCTCATTATCCTGGA
TCTCTCCATTTACCCTTGAACCTATTTAATTTACCATACCTTTTGATAAA
TTTTCAGGTATAGGGGCACTATTGCTGAATGCTCTATCTGTGTGCTACGG
CAGCTTCAGTTTGATTTATATTATAATATTTGTTTTCTTACAGGTGGTGT
TTACAATACATTTAATTTCAACGCAACGTATCTTTTCACACATTATTTTG
TTCTCTATAATCTCATAGAAAACAGGCACTTTGTCCTATTTCTCAGGACA
AGGCAATGATGGAGTCAAATTACATATTCGTTTTATAAGTGGCTCCAATT
TTCGGGTCAGGTCTGAGGCAAATTAGATTACTTTGATCATCCCTGATATT
ATACCATACTTACGCTTATTGGTTCAAGGGCCGTTTGGATCGTTTGCCAT
GGTTAGAATATCTTATAAGCTTTCATTTTACGAGATAATGAAAAAAATTG
CTAATTTAAGGCCTCAAATCTTAGCATCCTAGCATCTTAGCATCCTTATA
ATGATATGAAAATAGATATGAATGTAGATATGAAAAATTATTGAAAAATG
CTATCATGATAACCTGACAATTAAAAAATTTTCTTAATTAATTTACAAAT
ATCTAGATGTTATATCCTTTTAATTTTGGTGAAACCAGTTGCTTCTTTAT
TTATTTACAAAGAATGGTCTTTCAGAGGTAAAATTATTTTTTTCTATGAA
ATTTCAAAAAAGAGTTAGATTTTTGTAAGCTAATGGCAATGTTAGTTTTT
TTTCTTAGATCTCTAAAGAATGATCTTTTTTGGGAAACCTTTCTCCCATA
TCACAACATGGATTACCACATTATGAAATAGTATAAATTATGTAATTTAT
AATTTTCTATTATCAATCTGCTCATTATTTTATTCATGAAAATACTTTTA
ATCTATCTTGCAGTCAACAGTGACGAAGGAGNTTATTTTGCTATTAGGCA
AATTTGAGTAGCTGTCTACCTGAAGGTAGGGACGTCTCATTATCCTGGAT
CTCTCCATTTACCCTTGAACCTATTTAATTTACCATACCTTTTGATAAAT
TTTCAGGTATAGGGGCACTATTGCTGAATGCTCTATCTGTGTGCTACGGC
AGCTTCAGTTTGATTTATATTATAATATTTGTTTTCTTACAGGTGGTGTT
TACAATACATTTAATTTCAACGCAACGTATCTTTTCACACATTATTTTGT
TCTCTATAATCTCATAGAAAACAGGCACTTTGTCCTATTTCTCAGGACAA
GGCAATGATGGAGTCAAATAACACATTCGTTTTATAAGTGGCTCCAATTT
TCGGGTCAGGTCTGAGGCAAATTAGATTACTTTGATCATCCCTGATATTA
TACCATACTTACGCTTATTGGGTCAAGGGCCGTTTGGATCGTTTGCCATG
GTTAGAATATCTTATAAGCTTTCATTTTACGAGATAATGAAAAAAATTGC
TAATTTAAGGCCTCAAATCTTAGCATCCTAGCATCTTAGCATCCTTATAA
TGATATGAAAATAGATATGAATGTAGATATGAAAAATTATTGAAAAATGC
TATCATGATAACCTGACAATTAAAAAATTTTCTTAATTAATTTACAAATA
TCTAGATGTTATATCCTTTTAATTTTGGTGAAACCAGTTGCTTCTTTATT
TATTTACAAAGAATGGTCTTTCAGAGGTAAAATCATTTTTTTCTATGAAA
TTTCAAAAAAGAGTTAGATTTTTGTAAGCTATGGCAATGTTAGTTTTTTT
TCTTAGATCTCTAAAGAATGATCTTTTTTGGGAAACCTTTCTCCCATATC
ACAACATGGATTACCACATTATGAAATAGTATAAATTATGTAATTTATAA
TTTTCTATTATCAATCTGCTCATTATTTTATTCATGAAAATACTTTTAAT
CTATCTTGCAGTCAACAGTGACGAAGGAGAAGGACAGGCTCCAAATGCAT
CTGCTTACGAACGTTTAGATCAAAACAATGGAGGCGGAGCATATGGCGGT
TATGGTGGAGCCAAGGATCAACCACCTCAATACCAGCCACCTCAGCAGCC
CTTTCCGTAAACCTCACGGTGTTTATGAACTGTCATGGATGCCTTTAGAA
TACTCACTATACCAAAACACTTCATTTTCTTAAAACTTTTTGATATTTGA
CAACGCTTTTGTAACCTCTGTTAATTGCACTATGTTAGTATTTTGTTCTT
GTAGCTAGATAGTTTTGGTACTAAGGACTATTTCCTAAGTTCCAGAGGTT
TAACAAATAGTTGGTCCTCCATCATGTTGTTGCGGGATATTCAAGAAGTT
AATTCAACAACACTTTAACCTAAAACCTTTCCAAGGCCATTTGTAAAATT
CTTTAAAAAGACTGGAATTGCCCTGAATCTTTCTTTGAATTTAGTTCCTT
TGTCTTTAACAGTTCAAAGGTTTTTTTAAGTTGTTAATGTGTAATCATTC
ATCTATGTTCTGTAATCATATATAATTGTTTTACTTTAAATTTGCACTAT
TTATGTTTTTTTTGTATTACTGTATGCATATTTTTTACCATGGCATTGTT
TTTGCTTCTCAAGGAATGGGAAGGACTTTACATTCTAGTTAAATTTTCAA
ATATTCAGCCACTAATTTCAGCCAAATTCTTTTTGATTTTGAGGTTCTTT
TTCTTCTGGAATTGACATTATTACAGCCCTGTGAATCCAGGTCGGCATTC
GGCAATGCCGACTTGAAAGCCCACGTAAGTTGAGCTGAAGTCGGCTTTTA
TTTGCCAACGTAATTTACACTCTAGGTCGGCGTGCCGACAAAAGAAATGT
TTTGGGTCGGCAAAGCTGACCTAAAGAGGAAAAATATTATTTGTTAGGTT
AATCTAATTNN

Coding sequence (CDS) from alignment at sc0000264:360182..363992-

>TCONS_00017321 ID=TCONS_00017321|Name=TCONS_00017321|organism=Clytia hemisphaerica|type=CDS|length=2952bp|location=Sequence derived from alignment at sc0000264:360182..363992- (Clytia hemisphaerica)
TCAACAGTGACGAAGGAGAAGGACAGGCTCCAAATGCATCTGCTTACGAA
CGTTTAGATCAAAACAATGGAGGCGGAGCATATGGCGGTTATGGTGGAGC
CAAGGATCAACCACCTCAATACCAGCCACCTCAGCAGCCCTTTCCGTAAA
TGTTATATCCTTTTAATTTTGGTGAAACCAGTTGCTTCTTTATTTATTTA
CAAAGAATGGTCTTTCAGAGGTGGTGTTTACAATACATTTAATTTCAACG
CAACTTTTTCTTTGGAATGCTTTTCACATTGCTAAACGATATTATCAATA
TTGGAGTACGATTTGAAGGAAGTAAAAATGGTGCCAAGGCTGGACTGCAG
TTGGCTTGGATTGGGTTGGGTCTGGTTATTTGTTGTCAAACTATTTTGTT
GTACTGATTGGTATTTGGGCTGAATACGACAAAATCTCTCCTGTTCCTGT
ACAAATTATGATCTTTATGGTACTGTTTTGTATGGTCACTTGTCAACAGT
GACGAAGGAGAAGGACAGGCTCCAAATGCATCTGCTTACGAACGTTTAGA
TCAAAACAATGGAGGCGGAGCATATGGCGGTTATGGTGGAGCCAAGGATC
AACCACCTCAATACCAGCCACCTCAGCAGCCCTTTCCGTAAATGTTATAT
CCTTTTAATTTTGGTGAAACCAGTTGCTTCTTTATTTATTTACAAAGAAT
GGTCTTTCAGAGGTGGTGTTTACAATACATTTAATTTCAACGCAACTTTT
TCTTTGGAATGCTTTTCACATTGCTAAACGATATTATCAATATTGGAGTA
CGATTTGAAGGAAGTAAAAATGGTGCCAAGGCTGGACTGCAGTTGGCTTG
GATTGGGTTGGGTCTGGTTATTTGTTGTCAAACTATTTTGTTGTACTGAT
TGGTATTTGGGCTGAATACGACAAAATCTCTCCTGTTCCTGTACAAATTA
TGATCTTTATGGTACTGTTTTGTATGGTCACTTGTCAACAGTGACGAAGG
AGAAGGACAGGCTCCAAATGCATCTGCTTACGAACGTTTAGATCAAAACA
ATGGAGGCGGAGCATATGGCGGTTATGGTGGAGCCAAGGATCAACCACCT
CAATACCAGCCACCTCAGCAGCCCTTTCCGTAAATGTTATATCCTTTTAA
TTTTGGTGAAACCAGTTGCTTCTTTATTTATTTACAAAGAATGGTCTTTC
AGAGGTGGTGTTTACAATACATTTAATTTCAACGCAACTTTTTCTTTGGA
ATGCTTTTCACATTGCTAAACGATATTATCAATATTGGAGTACGATTTGA
AGGAAGTAAAAATGGTGCCAAGGCTGGACTGCAGTTGGCTTGGATTGGGT
TGGGTCTGGTTATTTGTTGTCAAACTATTTTGTTGTACTGATTGGTATTT
GGGCTGAATACGACAAAATCTCTCCTGTTCCTGTACAAATTATGATCTTT
ATGGTACTGTTTTGTATGGTCACTTGTCAACAGTGACGAAGGAGAAGGAC
AGGCTCCAAATGCATCTGCTTACGAACGTTTAGATCAAAACAATGGAGGC
GGAGCATATGGCGGTTATGGTGGAGCCAAGGATCAACCACCTCAATACCA
GCCACCTCAGCAGCCCTTTCCGTAAATGTTATATCCTTTTAATTTTGGTG
AAACCAGTTGCTTCTTTATTTATTTACAAAGAATGGTCTTTCAGAGGTGG
TGTTTACAATACATTTAATTTCAACGCAACTTTTTCTTTGGAATGCTTTT
CACATTGCTAAACGATATTATCAATATTGGAGTACGATTTGAAGGAAGTA
AAAATGGTGCCAAGGCTGGACTGCAGTTGGCTTGGATTGGGTTGGGTCTG
GTTATTTGTTGTCAAACTATTTTGTTGTACTGATTGGTATTTGGGCTGAA
TACGACAAAATCTCTCCTGTTCCTGTACAAATTATGATCTTTATGGTACT
GTTTTGTATGGTCACTTGTCAACAGTGACGAAGGAGAAGGACAGGCTCCA
AATGCATCTGCTTACGAACGTTTAGATCAAAACAATGGAGGCGGAGCATA
TGGCGGTTATGGTGGAGCCAAGGATCAACCACCTCAATACCAGCCACCTC
AGCAGCCCTTTCCGTAAATGTTATATCCTTTTAATTTTGGTGAAACCAGT
TGCTTCTTTATTTATTTACAAAGAATGGTCTTTCAGAGGTGGTGTTTACA
ATACATTTAATTTCAACGCAACTTTTTCTTTGGAATGCTTTTCACATTGC
TAAACGATATTATCAATATTGGAGTACGATTTGAAGGAAGTAAAAATGGT
GCCAAGGCTGGACTGCAGTTGGCTTGGATTGGGTTGGGTCTGGTTATTTG
TTGTCAAACTATTTTGTTGTACTGATTGGTATTTGGGCTGAATACGACAA
AATCTCTCCTGTTCCTGTACAAATTATGATCTTTATGGTACTGTTTTGTA
TGGTCACTTGTCAACAGTGACGAAGGAGAAGGACAGGCTCCAAATGCATC
TGCTTACGAACGTTTAGATCAAAACAATGGAGGCGGAGCATATGGCGGTT
ATGGTGGAGCCAAGGATCAACCACCTCAATACCAGCCACCTCAGCAGCCC
TTTCCGTAAATGTTATATCCTTTTAATTTTGGTGAAACCAGTTGCTTCTT
TATTTATTTACAAAGAATGGTCTTTCAGAGGTGGTGTTTACAATACATTT
AATTTCAACGCAACTTTTTCTTTGGAATGCTTTTCACATTGCTAAACGAT
ATTATCAATATTGGAGTACGATTTGAAGGAAGTAAAAATGGTGCCAAGGC
TGGACTGCAGTTGGCTTGGATTGGGTTGGGTCTGGTTATTTGTTGTCAAA
CTATTTTGTTGTACTGATTGGTATTTGGGCTGAATACGACAAAATCTCTC
CTGTTCCTGTACAAATTATGATCTTTATGGTACTGTTTTGTATGGTCACT
TG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_009693	XLOC_009693	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00017321-protein	TCONS_00017321-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000264	supercontig	sc0000264:360182..363992 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
46.5026	47.3384	65.8862	67.3221	17.3921	11.5375	20.3332	20.9158	16.6508	19.2502	21.139	12.2834	11.9148	10.8974	14.91	16.1269	14.8496	13.43	10.5942	13.4928	9.52974	8.9932	17.6618	16.563	11.3954	13.1625	12.0493	10.8244	15.8846	14.4655

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR009436	AGTRAP

Vocabulary: **Biological Process**
Term	Definition
GO:0038166	angiotensin-activated signaling pathway

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0038166	angiotensin-activated signaling pathway

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00017321 vs. Swiss-Prot (Human)

BLAST of TCONS_00017321 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00017321 (transcript) - C. hemisphaerica