TCONS_00017317 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017317
Unique NameTCONS_00017317
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length965

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017317 ID=TCONS_00017317|Name=TCONS_00017317|organism=Clytia hemisphaerica|type=transcript|length=965bp
ACCCCAGCCTTGACCCGAAAATAGGGGttgctcaaaaaaaaaagtgttta
aaagataaaatcattcaaaatttACGTATAAAAAGttgtcttttaaaatt
tcattctgATTGTTTATGTGGACGTTGGTATGAAATGATGAGCGTTCCTG
CCAATCTTTCTCGTCTCAAGAAAGTGATTTTAATCAACATACGACTTCAA
TGTTCTTGTTTGAGATAACTTTTGTGATGacgattcttgttgtaaaaagA
TTAGCAAAGGGTTTCTTGAAAATCCAGCTGTATAATTTGATGAGGCGAAC
AATAGGGGATATAAATGCTTGTAAAATCTTTGGCCAGTTATAATAAAGTT
GAATTTCATCTGCGCTTTTCCCTTCTATCTTCATGATAGTCTTGGTAACC
TTTGTTGCATTTTTGCAATATTCTGGTAACTCGTGTAACATTGTTTTCAC
ATGTTCTTTGTATAACTTCTCTGTTTCTTTATCATCAAACTGTATATCAA
AGTCCACCCTCACCATCCACGCAGTTTGGAATTTTCCGATCTTTGAAGTG
TCTGTTAAAGCTATCCAGTAGTCATATTCAAATGCTTTTTCTTCCCTCCA
AATGACTTGTTTTGATGACCAAAAGTAAAATTTAGGCTCGATGACTTCAC
AATATGTGATGATCTCCGGTCTAGTCGATATTTGACGGTTGACTGAGTTA
ATCCAATCTTCTTCCCTTGGGACATCATTTTCGGCGTCATTTTCTTCCCT
TGGGACATCATTTTCGTCGTCATTTTCTTCCCTTGGGACATCATTTTCGT
CGTCATTTTCTTCCCTTGGGACATCATTTTCGTCAGAGGATGTGAAGATT
TTCATTATGTTGAAGATCAAACAGTGAACGAATGACAAGACAGCCCATGT
TGTAAACCAATTTGTTGCAACAACAGATGTTTGTAACAATGCAACAAGAA
AGCTCACTGCGAATT
Run BLAST on NCBI

transcript from alignment at sc0000264:356202..357463-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017317 ID=TCONS_00017317|Name=TCONS_00017317|organism=Clytia hemisphaerica|type=transcript|length=1262bp|location=Sequence derived from alignment at sc0000264:356202..357463- (Clytia hemisphaerica)
ACCCCAGCCTTGACCCGAAAATAGGGGTTGCTCAAAAAAAAAAGTGTTTA
AAAGATAAAATCATTCAAAATTTACGTATAAAAAGTTGTCTTTTAAAATT
TCATTCTGATTGTTTATGTGGACGTTGGTATGAAATGATGAGCGTTCCTG
CCAATCTTTCTCGTCTCAAGAAAGTGATTTTAATCAACATACGACTTCAA
TGTTCTTGTTTGAGATAACTTTTGTGATGACGATTCTTGTTGTAAAAAGA
TTAGCAAAGGGTTTCTTGAAAATCCAGCTGTATAATTTGATGAGGCGAAC
AATAGGGGATATAAATGCTTGTAAAATCTTTGGCCAGTTATAATAAAGTT
GAATTTCATCTGCGCTTTTCCCTTCTATCTTCATGATAGTCTTGGTAACC
TTTGTTGCATTTTTGCAATATTCTGGTAACTCGTGTAACATTGTTTTCAC
ATGTTCTTTGTATAACTTCTCTGTTTCTTTATCATCAAACTGTATATCAA
AGTCCACCCTCACCATCCACGCAGTTTGGAATTTTCCGATCTTTGAAGTG
TCTGTTAAAGCTATCCAGTAGTCATATTCAAATGCTTTTTCTTCCCTCCA
AATGACTTGTTTTGATGACCAAAAGTAAAATTTAGGCTCGATGACTTCAC
AATATGTGATGATCTCCGGTCTAGTCGATATTTGACGGTTGACTGAGTTA
ATCCAATCTTCTTCCCTTGGGACATCATTTTCGTCGTCATTTTCTTCCCT
TGGGACATCATTTTCGTCGTCATTTTCTTCCCTTGGGACATCATTTTCGG
CGTCATTTTCTTCCCTTGGGACATCATTTTCGTCGTCATTTTCTTCCCTT
GGGACATCATTTTCGTCGTCATTTTCTTCCCTTGGGACATCATTTTCGGC
GTCATTTTCTTCCCTTGGGACATCATTTTCGTCGTCATTTTCTTCCCTTG
GGACATCATTTTCGTCGTCATTTTCTTCCCTTGGGACATCATTTTCGTCG
TCATTTTCTTCCCTTGGGACATCATTTTCGGCGTCATTTTCTTCCCTTGG
GACATCATTTTCGTCGTCATTTTCTTCCCTTGGGACATCATTTTCGTCGT
CATTTTCTTCCCTTGGGACATCATTTTCGTCAGAGGATGTGAAGATTTTC
ATTATGTTGAAGATCAAACAGTGAACGAATGACAAGACAGCCCATGTTGT
AAACCAATTTGTTGCAACAACAGATGTTTGTAACAATGCAACAAGAAAGC
TCACTGCGAATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009692XLOC_009692Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017317-exon-sc0000264-1575043694:356741..357463TCONS_00017317-exon-sc0000264-1575043694:356741..357463Clytia hemisphaericaexon
TCONS_00017317-exon-sc0000264-1575043694:356202..356443TCONS_00017317-exon-sc0000264-1575043694:356202..356443Clytia hemisphaericaexon
TCONS_00017317-exon-sc0000264-1510915933:356741..357463TCONS_00017317-exon-sc0000264-1510915933:356741..357463Clytia hemisphaericaexon
TCONS_00017317-exon-sc0000264-1510915933:356202..356443TCONS_00017317-exon-sc0000264-1510915933:356202..356443Clytia hemisphaericaexon
TCONS_00017317-exon-sc0000264-1491911889:356741..357463TCONS_00017317-exon-sc0000264-1491911889:356741..357463Clytia hemisphaericaexon
TCONS_00017317-exon-sc0000264-1491911889:356202..356443TCONS_00017317-exon-sc0000264-1491911889:356202..356443Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000264supercontigsc0000264:356202..357463 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.11778	0.0771446	0	0	0.963475	0.506657	0.157603	0.567832	0.279946	0.0583722	0	0	8.13971	4.59403	1.1238	2.79816	2.10823	1.20004	3.55138	5.3659	1.53163	0.890999	9.23743	13.4076	69.3611	40.7771	6.39663	8.30537	0.107395	0.101377
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017317 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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