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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017304 ID=TCONS_00017304|Name=TCONS_00017304|organism=Clytia hemisphaerica|type=transcript|length=2458bpRun BLAST on NCBI protein sequence of TCONS_00017304-protein >TCONS_00017304-protein ID=TCONS_00017304-protein|Name=TCONS_00017304-protein|organism=Clytia hemisphaerica|type=polypeptide|length=632bp MSTKRPSSIPNSIGDKPLKTTEEFDCERRGLKLTKTCLGAGAYAKVKLAYRun BLAST on NCBI transcript from alignment at sc0000264:156603..163603- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00017304 ID=TCONS_00017304|Name=TCONS_00017304|organism=Clytia hemisphaerica|type=transcript|length=7001bp|location=Sequence derived from alignment at sc0000264:156603..163603- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000264:156603..163603- >TCONS_00017304 ID=TCONS_00017304|Name=TCONS_00017304|organism=Clytia hemisphaerica|type=CDS|length=18990bp|location=Sequence derived from alignment at sc0000264:156603..163603- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00017304 vs. Swiss-Prot (Human)
Match: TSSK2 (Testis-specific serine/threonine-protein kinase 2 OS=Homo sapiens GN=TSSK2 PE=1 SV=2) HSP 1 Score: 230.72 bits (587), Expect = 1.645e-67 Identity = 124/288 (43.06%), Postives = 177/288 (61.46%), Query Frame = 1
Query: 586 LGAGAYAKVKLAYVTNAKLEKDKRLAGELKLKGTNKVAMKVISRKSAPKEYINKFMPREIETLHATYHDDNIIKLYETFRT-DTRVYLVMEYASKGDLLEYINSRSGKTPGIGEAKAKNFFKQLVSGIQHCHRRNVVHRDLKCENLLIDDDEVIKVSDFGFATRF--PTNKQKLL-ETFCGSYAYAAPEILQAEKYDGKIADIWSLGVILFAMLNGRLPYNDRDIRTLIE-QTKSKPRFSSRVNVTPECQDLVCKILTTDPQKRATLQDILRHPWMTSDNETAEEKAS 1434
LG G+YAKVK AY K VA+K+I RK P +++ +F+PRE++ L AT + +IIK YE F T D R+Y++ME +GDLLE+I + + E A+ F+QL S +++CH ++VHRDLKCENLL+D D IK+SDFGF+ R +N + +L +TFCGS AYAAPE+LQ+ Y K+ DIWSLGVIL+ M+ G +PY+D DIR ++ Q + + F N+T EC+DL+ ++L D +R + +IL H W+ A AS
Sbjct: 18 LGKGSYAKVKSAYSERLKFN----------------VAVKIIDRKKTPTDFVERFLPREMDIL-ATVNHGSIIKTYEIFETSDGRIYIIMELGVQGDLLEFIKCQGA----LHEDVARKMFRQLSSAVKYCHDLDIVHRDLKCENLLLDKDFNIKLSDFGFSKRCLRDSNGRIILSKTFCGSAAYAAPEVLQSIPYQPKVYDIWSLGVILYIMVCGSMPYDDSDIRKMLRIQKEHRVDFPRSKNLTCECKDLIYRMLQPDVSQRLHIDEILSHSWLQPPKPKATSSAS 284 The following BLAST results are available for this feature:
BLAST of TCONS_00017304 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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