TCONS_00017302 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017302
Unique NameTCONS_00017302
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1387

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017302 ID=TCONS_00017302|Name=TCONS_00017302|organism=Clytia hemisphaerica|type=transcript|length=1387bp
AGTAGATCGGCTGGTCTCTCTCCTGATGGTTCTGGATGGGATAGGCTATC
ACAGTCAGGCTCATCGAATGGATCCTCTAGGTTAGGCTCATCAGGATTTA
TTGGTTCCACAGGATCAATTGGAACATCAGGGCCGGTCGGCAGTCCAGGG
TCGGATGGATCCTCTAGGTTATCATCAGGGTTTGTTGGTTCCACAGGATC
AATTGGAACATCAGGGCCGGTCGGCAGTCCAGGGTCGGATGGATCCTCTA
GGTTATCATCAGGGTTTGTTGGTTCCACAGGATCAATTGGTACATCAGGG
CCGGTCGGCAGTTCAGGGACGGTTGGATCCTCTAGGTTATCATCAGGGTT
TATTGGTTCCACAGGATCAATTGGTACATCAGGATTTGTTGGTTCCACAG
GACCAATTGGAACATCAGGGCCGGTTGGCAGTCCAGGGGCGGATGGATCT
TCTAGGTTATCATCAGGGTTTATTGGTTCCACAGGATCAATTGGTGCATC
AGGGTTTATTGGTTCCACAGGATCAATTGGAACATCAGGGTTTATTGGTT
CCACAGGATCAATCGGTACATCAGGGTTTATTGGTTCCACAGGATCAATT
GGTGCATCAGGGCCGGTTGGCAGTCCAGGGACAGATGGATCCTCTAGGTT
ATCATCAGGGTTTATTGGTTCCACAGGATCAATCGGTACATCAGGGTTTA
TTGGTTCCACAGGATCAATTGGTGCATCAGGGCCGGTTGGCAGTCCAGGG
ACAGATGGATCCTCTAGGTTATCATCAGGGTTTATTGGTTCCACAGGATC
AATTGGTGCATCAGGGCCGGTCGGCAGTCCAGGGGCGGATGGATCTTCTA
GGTTATCATCAGGGTTTATTGGTTCCACAGGATCAATTGGTGCATCAGGA
TTTGTTGGTTCCACAGGATCAATTGGTGCATCAGGGTTTGTTGGTTCCAC
AGGATCAATCGGTACATCAGGGTTTATTGGTTCCACAGGATCAATTGGTG
CATCAGGATTTGTTGGTTCCACAGGATCAATTGGTGCATCAGGGTTTGTT
GGTTCCACAGGACCAATTGGTGCATCAGGGCCGGTCGGCAGTCCAGGGGC
GGATGGATCCTCTAGGTTATCATCAGGATTTGTTGGTTCCACAGGACCAA
TTAGGATGATCGACAGTCCACGGCCGGTATTAGGGGCGGGTTCAGGGGCG
GTTTCAGGGGCGATTTCAGGGGCAGGTTCAGGGGCAAGTTCAGGGGCTGG
TTCAGGAGCGGGTTCAGGGACTGGTTCAGGAGCGGGTTCAGGGGCGGAAG
GATCAGGCACGTCAGGATTAGTTGGCTTTTCCGTTTGTTTTTTATGCCGT
CTTATTACGTATGGTCTCCTAGGTAGATATATCATTG
Run BLAST on NCBI

protein sequence of TCONS_00017302-protein

>TCONS_00017302-protein ID=TCONS_00017302-protein|Name=TCONS_00017302-protein|organism=Clytia hemisphaerica|type=polypeptide|length=462bp
SRSAGLSPDGSGWDRLSQSGSSNGSSRLGSSGFIGSTGSIGTSGPVGSPG
SDGSSRLSSGFVGSTGSIGTSGPVGSPGSDGSSRLSSGFVGSTGSIGTSG
PVGSSGTVGSSRLSSGFIGSTGSIGTSGFVGSTGPIGTSGPVGSPGADGS
SRLSSGFIGSTGSIGASGFIGSTGSIGTSGFIGSTGSIGTSGFIGSTGSI
GASGPVGSPGTDGSSRLSSGFIGSTGSIGTSGFIGSTGSIGASGPVGSPG
TDGSSRLSSGFIGSTGSIGASGPVGSPGADGSSRLSSGFIGSTGSIGASG
FVGSTGSIGASGFVGSTGSIGTSGFIGSTGSIGASGFVGSTGSIGASGFV
GSTGPIGASGPVGSPGADGSSRLSSGFVGSTGPIRMIDSPRPVLGAGSGA
VSGAISGAGSGASSGAGSGAGSGTGSGAGSGAEGSGTSGLVGFSVCFLCR
LITYGLLGRYII
Run BLAST on NCBI

transcript from alignment at sc0000264:109139..110849-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017302 ID=TCONS_00017302|Name=TCONS_00017302|organism=Clytia hemisphaerica|type=transcript|length=1711bp|location=Sequence derived from alignment at sc0000264:109139..110849- (Clytia hemisphaerica)
AGTAGATCGGCTGGTCTCTCTCCTGATGGTTCTGGATGGGATAGGCTATC
ACAGTCAGGCTCATCGAATGGATCCTCTAGGTTAGGCTCATCAGGATTTA
TTGGTTCCACAGGATCAATTGGAACATCAGGGCCGGTCGGCAGTCCAGGG
TCGGATGGATCCTCTAGGTTATCATCAGGGTTTGTTGGTTCCACAGGATC
AATTGGAACATCAGGGCCGGTCGGCAGTCCAGGGTCGGATGGATCCTCTA
GGTTATCATCAGGGTTTGTTGGTTCCACAGGATCAATTGGTACATCAGGA
TTTGTTGGTTCCACAGGACTAATTGGTACATCAGGGCCGGTCGGCAGTCC
AGGGGCGGATGGATCCTCTAGGTTATCATCAGGGTTTATTGGTTCCACAG
GATCAATTGGAACATCAGGGCCGGTCGGCAGTCCAGGGACGGATGGATCC
TCTAGGTTATCATCAGGGTTTATTGGTTCCACAGGACTAATTGGTACATC
AGGGCCGGTCGGCAGTTCAGGGACGGTTGGATCCTCTAGGTTATCATCAG
GGTTTATTGGTTCCACAGGATCAATTGGTACATCAGGATTTGTTGGTTCC
ACAGGACTAATTGGTACATCAGGGCCGGTCGGCAGTTCAGGGACGGTTGG
ATCCTCTAGGTTATCATCAGGGTTTATTGGTTCCACAGGATCAATTGGTA
CATCAGGATTTGTTGGTTCCACAGGACCAATTGGAACATCAGGGCCGGTT
GGCAGTCCAGGGGCGGATGGATCTTCTAGGTTATCATCAGGGTTTATTGG
TTCCACAGGATCAATTGGTGCATCAGGGTTTATTGGTTCCACAGGATCAA
TTGGAACATCAGGGTTTATTGGTTCCACAGGATCAATCGGTACATCAGGG
TTTATTGGTTCCACAGGATCAATTGGTGCATCAGGGCCGGTTGGCAGTCC
AGGGACAGATGGATCCTCTAGGTTATCATCAGGGTTTATTGGTTCCACAG
GATCAATCGGTACATCAGGGTTTATTGGTTCCACAGGATCAATTGGTGCA
TCAGGGCCGGTTGGCAGTCCAGGGACAGATGGATCCTCTAGGTTATCATC
AGGGTTTATTGGTTCCACAGGATCAATTGGTGCATCAGGGCCGGTCGGCA
GTCCAGGGGCGGATGGATCTTCTAGGTTATCATCAGGGTTTATTGGTTCC
ACAGGATCAATTGGTGCATCAGGATTTGTTGGTTCCACAGGATCAATTGG
TGCATCAGGGTTTGTTGGTTCCACAGGATCAATCGGTACATCAGGGTTTA
TTGGTTCCACAGGATCAATTGGTGCATCAGGATTTGTTGGTTCCACAGGA
TCAATTGGTGCATCAGGGTTTGTTGGTTCCACAGGACCAATTGGTGCATC
AGGGCCGGTCGGCAGTCCAGGGGCGGATGGATCCTCTAGGTTATCATCAG
GATTTGTTGGTTCCACAGGACCAATTAGGATGATCGACAGTCCACGGCCG
GTATTAGGGGCGGGTTCAGGGGCGGTTTCAGGGGCGATTTCAGGGGCAGG
TTCAGGGGCAAGTTCAGGGGCTGGTTCAGGAGCGGGTTCAGGGACTGGTT
CAGGAGCGGGTTCAGGGGCGGAAGGATCAGGCACGTCAGGATTAGTTGGC
TTTTCCGTTTGTTTTTTATGCCGTCTTATTACGTATGGTCTCCTAGGTAG
ATATATCATTG

Coding sequence (CDS) from alignment at sc0000264:109139..110849-

>TCONS_00017302 ID=TCONS_00017302|Name=TCONS_00017302|organism=Clytia hemisphaerica|type=CDS|length=2772bp|location=Sequence derived from alignment at sc0000264:109139..110849- (Clytia hemisphaerica)
ATCAGGGCCGGTCGGCAGTTCAGGGACGGTTGGATCCTCTAGGTTATCAT
CAGGGTTTATTGGTTCCACAGGATCAATTGGTACATCAGGATTTGTTGGT
TCCACAGGACCAATTGGAACATCAGGGCCGGTTGGCAGTCCAGGGGCGGA
TGGATCTTCTAGGTTATCATCAGGGTTTATTGGTTCCACAGGATCAATTG
GTGCATCAGGGTTTATTGGTTCCACAGGATCAATTGGAACATCAGGGTTT
ATTGGTTCCACAGGATCAATCGGTACATCAGGGTTTATTGGTTCCACAGG
ATCAATTGGTGCATCAGGGCCGGTTGGCAGTCCAGGGACAGATGGATCCT
CTAGGTTATCATCAGGGTTTATTGGTTCCACAGGATCAATCGGTACATCA
GGGTTTATTGGTTCCACAGGATCAATTGGTGCATCAGGGCCGGTTGGCAG
TCCAGGGACAGATGGATCCTCTAGGTTATCATCAGGGTTTATTGGTTCCA
CAGGATCAATTGGTGCATCAGGGCCGGTCGGCAGTCCAGGGGCGGATGGA
TCTTCTAGGTTATCATCAGGGTTTATTGGTTCCACAGGATCAATTGGTGC
ATCAGGATTTGTTGGTTCCACAGGATCAATTGGTGCATCAGGGTTTGTTG
GTTCCACAGGATCAATCGGTACATCAGGGTTTATTGGTTCCACAGGATCA
ATTGGTGCATCAGGATTTGTTGGTTCCACAGGATCAATTGGTGCATCAGG
GTTTGTTGGTTCCACAGGACCAATTGGTGCATCAGGGCCGGTCGGCAGTC
CAGGGGCGGATGGATCCTCTAGGTTATCATCAGGATTTGTTGGTTCCACA
GGACCAATTAGGATGATCGACAGTCCACGGCCGGTATTAGGGGCGGGTTC
AGGGGCGGTTTCAGGGGCGATTTCAGGGGCAGGTTCAGGGGCAAGTTCAG
GGGCTGGTTCAGGAGCGGGTTCAGGGACTGGTTCAGGAGCGGGTTCAGGG
GCGGAAGGATCAGGCACGTCAGGATTAGTTGGCTTTTCCGTTTGTTTTTT
ATGCCGTCTTATTACGTATGGTCTCCTAGGTAGATATATCATTAGTAGAT
CGGCTGGTCTCTCTCCTGATGGTTCTGGATGGGATAGGCTATCACAGTCA
GGCTCATCGAATGGATCCTCTAGGTTAGGCTCATCAGGATTTATTGGTTC
CACAGGATCAATTGGAACATCAGGGCCGGTCGGCAGTCCAGGGTCGGATG
GATCCTCTAGGTTATCATCAGGGTTTGTTGGTTCCACAGGATCAATTGGA
ACATCAGGGCCGGTCGGCAGTCCAGGGTCGGATGGATCCTCTAGGTTATC
ATCAGGGTTTGTTGGTTCCACAGGATCAATTGGTACATCAGGGCCGGTCG
GCAGTTCAGGGACGGTTGGATCCTCTAGGTTATCATCAGGGTTTATTGGT
TCCACAGGATCAATTGGTACATCAGGATTTGTTGGTTCCACAGGACCAAT
TGGAACATCAGGGCCGGTTGGCAGTCCAGGGGCGGATGGATCTTCTAGGT
TATCATCAGGGTTTATTGGTTCCACAGGATCAATTGGTGCATCAGGGTTT
ATTGGTTCCACAGGATCAATTGGAACATCAGGGTTTATTGGTTCCACAGG
ATCAATCGGTACATCAGGGTTTATTGGTTCCACAGGATCAATTGGTGCAT
CAGGGCCGGTTGGCAGTCCAGGGACAGATGGATCCTCTAGGTTATCATCA
GGGTTTATTGGTTCCACAGGATCAATCGGTACATCAGGGTTTATTGGTTC
CACAGGATCAATTGGTGCATCAGGGCCGGTTGGCAGTCCAGGGACAGATG
GATCCTCTAGGTTATCATCAGGGTTTATTGGTTCCACAGGATCAATTGGT
GCATCAGGGCCGGTCGGCAGTCCAGGGGCGGATGGATCTTCTAGGTTATC
ATCAGGGTTTATTGGTTCCACAGGATCAATTGGTGCATCAGGATTTGTTG
GTTCCACAGGATCAATTGGTGCATCAGGGTTTGTTGGTTCCACAGGATCA
ATCGGTACATCAGGGTTTATTGGTTCCACAGGATCAATTGGTGCATCAGG
ATTTGTTGGTTCCACAGGATCAATTGGTGCATCAGGGTTTGTTGGTTCCA
CAGGACCAATTGGTGCATCAGGGCCGGTCGGCAGTCCAGGGGCGGATGGA
TCCTCTAGGTTATCATCAGGATTTGTTGGTTCCACAGGACCAATTAGGAT
GATCGACAGTCCACGGCCGGTATTAGGGGCGGGTTCAGGGGCGGTTTCAG
GGGCGATTTCAGGGGCAGGTTCAGGGGCAAGTTCAGGGGCTGGTTCAGGA
GCGGGTTCAGGGACTGGTTCAGGAGCGGGTTCAGGGGCGGAAGGATCAGG
CACGTCAGGATTAGTTGGCTTTTCCGTTTGTTTTTTATGCCGTCTTATTA
CGTATGGTCTCCTAGGTAGATATATCATTAGTAGATCGGCTGGTCTCTCT
CCTGATGGTTCTGGATGGGATAGGCTATCACAGTCAGGCTCATCGAATGG
ATCCTCTAGGTTAGGCTCATCAGGATTTATTGGTTCCACAGGATCAATTG
GAACATCAGGGCCGGTCGGCAGTCCAGGGTCGGATGGATCCTCTAGGTTA
TCATCAGGGTTTGTTGGTTCCACAGGATCAATTGGAACATCAGGGCCGGT
CGGCAGTCCAGGGTCGGATGGATCCTCTAGGTTATCATCAGGGTTTGTTG
GTTCCACAGGATCAATTGGTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009680XLOC_009680Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017302-proteinTCONS_00017302-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017302-exon-sc0000264-1575043694:110557..110849TCONS_00017302-exon-sc0000264-1575043694:110557..110849Clytia hemisphaericaexon
TCONS_00017302-exon-sc0000264-1575043694:109139..110232TCONS_00017302-exon-sc0000264-1575043694:109139..110232Clytia hemisphaericaexon
TCONS_00017302-exon-sc0000264-1510915933:110557..110849TCONS_00017302-exon-sc0000264-1510915933:110557..110849Clytia hemisphaericaexon
TCONS_00017302-exon-sc0000264-1510915933:109139..110232TCONS_00017302-exon-sc0000264-1510915933:109139..110232Clytia hemisphaericaexon
TCONS_00017302-exon-sc0000264-1491911889:110557..110849TCONS_00017302-exon-sc0000264-1491911889:110557..110849Clytia hemisphaericaexon
TCONS_00017302-exon-sc0000264-1491911889:109139..110232TCONS_00017302-exon-sc0000264-1491911889:109139..110232Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000264supercontigsc0000264:109139..110849 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.454896	0.216277	0	0	0.487495	0.329921	0.429243	0.497891	0.115414	0.00870429	0	0.197718	0.153354	0.388255	0.156278	0.4913	0	0.0788973	0	0	0	0	0	0.0779368	0	0	0	0	0.0607863	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR008160Collagen
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017302 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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