|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017289 ID=TCONS_00017289|Name=TCONS_00017289|organism=Clytia hemisphaerica|type=transcript|length=3248bp
AGAAAACCAGTTTTATATAATGTTATACTTTTTTATTACTCTGTCACTTG
TTTTATTGGGAGAATAAACTGTTTTTTAATAGCGATactaattttttcag
aaaaaatgtaCACAATAAATCTTTATTGCTGGGTCCTTATATTGGTCACA
GTGTTGATGTATTGCGTTGGTTTTTTTGGCGTTATAACTGCATTCATCAG
ATATCCGATACAAACTGGTGTAGTTCTCGCTGCTTATGTGGCTTTCCATC
TGTGTGATGTCAcacttgtttacttttttcacaGAGTATtggaaaagaaa
atatatcattGGAGATTTTTATACGCTGAATTCGCAGTGAGCTTTCTTGT
TGCATTGTTACAAACATCTGTTGTTGCAACAAATTGGTTTACAACATGGG
CTGTCTTGTCATTCGTTCACTGTTTGATCTTCAACATAATGAAAATCTTC
ACATCCTCTGACGAAAATGATGTCCCAAGGGAAGAAAATGACGACGAAAA
TGATGTCCCAAGGGAAGAAAATGACGACGAAAATGATGTCCCAAGGGAAG
AAAATGACGCCGAAAATGATGTCCCAAGGGAAGAAAATGACGACGAAAAT
GATGTCCCAAGGGAAGAAAATGACGACGAAAATGATGTCCCAAGGGAAGA
AAATGACGACGAAAATGATGTCCCAAGGGAAGAAAATGACGCCGAAAATG
ATGTCCCAAGGGAAGAAAATGACGACGAAAATGATGTCCCAAGGGAAGAA
AATGACGACGAAAATGATGTCCCAAGGGAAGAAAATGACGCCGAAAATGA
TGTCCCAAGGGAAGAAAATGACGACGAAAATGATGTCCCAAGGGAAGAAA
ATGACGACGAAAATGATGTCCCAAGGGAAGAAGATTGGATTAACTCAGTC
AACCGTCAAATATCGACTAGACCGGAGATCATCACATATTGTGAAGTCAT
CGAGCCTAAATTTTACTTTTGGTCATCAAAACAAGTCATTTGGAGGGAAG
AAAAAGCATTTGAATATGACTACTGGATAGCTTTAACAGACACTTCAAAG
ATCGGAAAATTCCAAACTGCGTGGATGGTGAGGGTGGACTTTGATATACA
GTTTGATGATAAAGAAACAGAGAAGTTATACAAAGAACATGTGAAAACAA
TGTTACACGAGTTACCAGAATATTGCAAAAATGCAACAAAGGTTACCAAG
ACTATCATGAAGATAGAAGGGAAAAGCGCAGATGAAATTCAACTTTATTA
TAACTGGCCAAAGATTTTACAAGCATTTATATCCCCTATTGTTCGCCTCA
TCAAATTATACAGCTGGATTTTCAAGAAACCCTTTGCTAATctttttaca
acaagaatcgtCATCACAAAAGTTATCTCAAACAAGAACATTGAAGTCGT
ATGTTGATTAAAATCACTTTCTTGAGACGAGAAAGATTGGCAGGAACGCT
CATCATTTCATACCAACGTCCACATAAACAATcagaatgaaattttaaaa
gacaaCTTTTTATACGTaaattttgaatgattttatcttttaaacacttt
tttttttgagcaaCCCCTATTTTCGGGTCAAGGCTGGGGTTGATTAGCAT
TCTAGCTCTTTGTTgtctgaaaaatttgctttgaccacccctgatattta
ttcatttttttaaggTACATAGAATATCAACGAGAGGTATTTTTTATCAT
TGAAATCATCTATTTCCACCAAAGATATGTTTAGATCATGGAAAAAGTTA
GTACTTGTAATTTATACCTACCATGGACTACCTACACAAgcaaaaatgtt
gaatattaCAAGCTTTTTCCCAGACGTGGGTTTTTGCCCGAGGGGGGAAG
GAGGGTACTTAGTCAAAATGGGTGCCccatgtgcgagccataagggtccc
tttttcaaagtctctcaaaggggtacaaaaaccattaaaaagaaaattgg
gtctctgtaagggtcccaAATTCACGAAGATTgaaatttcctctctcaaa
gtgtcgcgtttttcagaaatttgaataaaaacaagtgaaaatcgacaaca
attttgagaaaagtctctctaagggtcccatAAACGCCAATATTTCCTCT
TTAAGGGTCAATGTttgatttttggctcggacatacccgtcacctcgcaa
acctagtacccccaggGGGTTCTGTCTGAGCCGAAATGCTCATAGCATCA
AGCCGGAACAAAAAGAAGTATCCTTGGATGGCTGTAGGGCAAAAGGATCg
agaaaaacaaaactttaaGTTCCAAAATTTGTTCCTTAAAATAGACTTTa
ccggagttttttatttttctaaataagcgatgcattgtgggattgtttcg
ggggtattacaatagaattccctcgaggaattatTAAGAGATTTCTATTA
TAATACCCCCGAAagaatcccacaatgcatcgcttttttagaaaaatcaa
aaactccgataagatctattgtcAAGAAGTATACCTTGTTTTTCATGGAA
GATTAGTTCATCAGCTACCAATTGACATTTCTCATTCGGTTTCTTGACCA
GTTTTGATTCGTCAATCTGGTACGGAAAGTTCATATGATGTAGGTCGGTA
TTGTCCatgcagattttcatttttttcttcaatccaTAGTTCAGCAACAT
GCTTTTTATGGTACTAGAACCTGAAAAGGGTgatattttcattattcatg
atatgcaccattgaaatgtcttccacggacccaatagctgattggttgaa
agtgacgtattgtcAGATATTACGTCACTTAaatcaatcagctattgggt
ctgtgatgtaatgtcaaaagacattgcaatggtgcatatcatgaataaga
aaaatattgacagaaagAGAGATTTTATGGAATATTGTTGACCTTACGGT
ACGAGTATTACGTAGTGCATAATTAtaggtaaagaaaaatatttaaaaag
ggTTTGTTATTTGCCATTATTGTAAAAATAGAAATTACATGTGCAGTAAC
TTTTAGAAAAGAAACAAAGTTATGAAATAacattttacctgttttttgta
ttttgatataaaaaatcGAAACATTGTTGTTCTGTTTGCATGACGACATC
TTAACAAAGGATGGTGTCTCATCCTTCGTTAAGAGTTTGTTGCTACTAGC
TTGTTTGGATGACTTTGAGAGAAGCACATAACCAACTGCCAACATTAGTG
TGGccatgaaaaataatttatgtttGTTTTGCCAAAATGCTTTGCCCA Run BLAST on NCBI protein sequence of TCONS_00017289-protein >TCONS_00017289-protein ID=TCONS_00017289-protein|Name=TCONS_00017289-protein|organism=Clytia hemisphaerica|type=polypeptide|length=468bp
RKPVLYNVILFYYSVTCFIGRINCFLIAILIFSEKMYTINLYCWVLILVT
VLMYCVGFFGVITAFIRYPIQTGVVLAAYVAFHLCDVTLVYFFHRVLEKK
IYHWRFLYAEFAVSFLVALLQTSVVATNWFTTWAVLSFVHCLIFNIMKIF
TSSDENDVPREENDDENDVPREENDDENDVPREENDAENDVPREENDDEN
DVPREENDDENDVPREENDDENDVPREENDAENDVPREENDDENDVPREE
NDDENDVPREENDAENDVPREENDDENDVPREENDDENDVPREEDWINSV
NRQISTRPEIITYCEVIEPKFYFWSSKQVIWREEKAFEYDYWIALTDTSK
IGKFQTAWMVRVDFDIQFDDKETEKLYKEHVKTMLHELPEYCKNATKVTK
TIMKIEGKSADEIQLYYNWPKILQAFISPIVRLIKLYSWIFKKPFANLFT
TRIVITKVISNKNIEVVC Run BLAST on NCBI transcript from alignment at sc0000264:354977..359121+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017289 ID=TCONS_00017289|Name=TCONS_00017289|organism=Clytia hemisphaerica|type=transcript|length=4145bp|location=Sequence derived from alignment at sc0000264:354977..359121+ (Clytia hemisphaerica)
AGAAAACCAGTTTTATATAATGTTATACTTTTTTATTACTCTGTCACTTG
TTTTATTGGGAGAATAAACTGTTTTTTAATAGCGATactaattttttcag
aaaaaatgtaCACAATAAATCTTTATTGCTGGGTCCTTATATTGGTCACA
GTGTTGATGTATTGCGTTGGTTTTTTTGGCGTTATAACTGCATTCATCAG
ATATCCGATACAAACTGGTGTAGTTCTCGCTGCTTATGTGGCTTTCCATC
TGTGTGATGTCAcacttgtttacttttttcacaGAGTATtggaaaagaaa
atatatcattGGAGATTTTTATACGCTGGTAAGTTTGATGAATAAAATCA
TTGATATCAGTTTTCCCCTCTATAACTTTGATAAGTGTGACGTATCCATT
CAGGATGTATAGTACATTGACCTCcgagcccgaagggctagacttgagac
tcctggatgggaaacgaagccacttatttcccatcctaaacacgtgaccc
gcgtggttttcacacaaacgctggattgaaagtaaaacatatcgccagat
ttcgaaaaatatgccgcgtgaaaacaaagaaaagcgCTAGATCCATCATT
CTAAAATcctaaggcttcactttttttgcttgagaaaggttgaagattca
tctctagccccttcggggctttgaaatGTACACACATGTATGTATGCACA
TACTTATTCCTTTGCCAACTCATTCATATCGCATCTTATTACTTTAAAgc
aagaaattttggcggatttggcggattcaGCCGAAATCCACCAATATAAG
TTCCGaccaaatttaaattattgtaTTTTTCCTCCAAATTTGTACTATTT
CAGGCCTTTGAAACAAGTTTTCTGCTTATTTAACACTTGTTTGATAGCGT
TTTCTTGGCCGAAAATATCCTTCATCCTCCAAATTAAATTCCAACCAAAT
TTATTTTCCAGCAATGTGGCAGACATTAAATtccctttgaaaaaactttt
cagacCTATTGACAAATTAAactcccaccaaaatttcttccatcTGAAGA
TTTGACCAAAAACCTGAGTTTACCATTCGATTTAGAAAAACAGAGCTCTT
CGAAATTTCAGAATTTCTAACTTTGAAGCTCGGGTCTTATTGAGagtctt
tttaaataaattagaCAGACTTTCCATAAACAAATAGCCTTATGGCGAAT
TATCCTAATTTATTATCCGTTTTAGAATTCGCAGTGAGCTTTCTTGTTGC
ATTGTTACAAACATCTGTTGTTGCAACAAATTGGTTTACAACATGGGCTG
TCTTGTCATTCGTTCACTGTTTGATCTTCAACATAATGAAAATCTTCACA
TCCTCTGACGAAAATGATGTCCCAAGGGAAGAAAATGACGACGAAAATGA
TGTCCCAAGGGAAGAAAATGACGACGAAAATGATGTCCCAAGGGAAGAAA
ATGACGCCGAAAATGATGTCCCAAGGGAAGAAAATGACGACGAAAATGAT
GTCCCAAGGGAAGAAAATGACGACGAAAATGATGTCCCAAGGGAAGAAAA
TGACGACGAAAATGATGTCCCAAGGGAAGAAAATGACGCCGAAAATGATG
TCCCAAGGGAAGAAAATGACGACGAAAATGATGTCCCAAGGGAAGAAAAT
GACGACGAAAATGATGTCCCAAGGGAAGAAAATGACGCCGAAAATGATGT
CCCAAGGGAAGAAAATGACGACGAAAATGATGTCCCAAGGGAAGAAAATG
ACGACGAAAATGATGTCCCAAGGGAAGAAGATTGGATTAACTCAGTCAAC
CGTCAAATATCGACTAGACCGGAGATCATCACATATTGTGAAGTCATCGA
GCCTAAATTTTACTTTTGGTCATCAAAACAAGTCATTTGGAGGGAAGAAA
AAGCATTTGAATATGACTACTGGATAGCTTTAACAGACACTTCAAAGATC
GGAAAATTCCAAACTGCGTGGATGGTGAGGGTGGACTTTGATATACAGTT
TGATGATAAAGAAACAGAGAAGTTATACAAAGAACATGTGAAAACAATGT
TACACGAGTTACCAGAATATTGCAAAAATGCAACAAAGGTTACCAAGACT
ATCATGAAGATAGAAGGGAAAAGCGCAGATGAAATTCAACTTTATTATAA
CTGGCCAAAGATTTTACAAGCATTTATATCCCCTATTGTTCGCCTCATCA
AATTATACAGCTGGATTTTCAAGAAACCCTTTGCTAATctttttacaaca
agaatcgtCATCACAAAAGTTATCTCAAACAAGAACATTGAAGTCGTATG
TTGATTAAAATCACTTTCTTGAGACGAGAAAGATTGGCAGGAACGCTCAT
CATTTCATACCAACGTCCACATAAACAATcagaatgaaattttaaaagac
aaCTTTTTATACGTaaattttgaatgattttatcttttaaacactttttt
ttttgagcaaCCCCTATTTTCGGGTCAAGGCTGGGGTTGATTAGCATTCT
AGCTCTTTGTTgtctgaaaaatttgctttgaccacccctgatatttattc
atttttttaaggTACATAGAATATCAACGAGAGGTATTTTTTATCATTGA
AATCATCTATTTCCACCAAAGATATGTTTAGATCATGGAAAAAGTTAGTA
CTTGTAATTTATACCTACCATGGACTACCTACACAAgcaaaaatgttgaa
tattaCAAGCTTTTTCCCAGACGTGGGTTTTTGCCCGAGGGGGGAAGGAG
GGTACTTAGTCAAAATGGGTGCCccatgtgcgagccataagggtcccttt
ttcaaagtctctcaaaggggtacaaaaaccattaaaaagaaaattgggtc
tctgtaagggtcccaAATTCACGAAGATTgaaatttcctctctcaaagtg
tcgcgtttttcagaaatttgaataaaaacaagtgaaaatcgacaacaatt
ttgagaaaagtctctctaagggtcccatAAACGCCAATATTTCCTCTTTA
AGGGTCAATGTttgatttttggctcggacatacccgtcacctcgcaaacc
tagtacccccaggGGGTTCTGTCTGAGCCGAAATGCTCATAGCATCAAGC
CGGAACAAAAAGAAGTATCCTTGGATGGCTGTAGGGCAAAAGGATCgaga
aaaacaaaactttaaGTTCCAAAATTTGTTCCTTAAAATAGACTTTaccg
gagttttttatttttctaaataagcgatgcattgtgggattgtttcgggg
gtattacaatagaattccctcgaggaattatTAAGAGATTTCTATTATAA
TACCCCCGAAagaatcccacaatgcatcgcttttttagaaaaatcaaaaa
ctccgataagatctattgtcAAGAAGTATACCTTGTTTTTCATGGAAGAT
TAGTTCATCAGCTACCAATTGACATTTCTCATTCGGTTTCTTGACCAGTT
TTGATTCGTCAATCTGGTACGGAAAGTTCATATGATGTAGGTCGGTATTG
TCCatgcagattttcatttttttcttcaatccaTAGTTCAGCAACATGCT
TTTTATGGTACTAGAACCTGAAAAGGGTgatattttcattattcatgata
tgcaccattgaaatgtcttccacggacccaatagctgattggttgaaagt
gacgtattgtcAGATATTACGTCACTTAaatcaatcagctattgggtctg
tgatgtaatgtcaaaagacattgcaatggtgcatatcatgaataagaaaa
atattgacagaaagAGAGATTTTATGGAATATTGTTGACCTTACGGTACG
AGTATTACGTAGTGCATAATTAtaggtaaagaaaaatatttaaaaagggT
TTGTTATTTGCCATTATTGTAAAAATAGAAATTACATGTGCAGTAACTTT
TAGAAAAGAAACAAAGTTATGAAATAacattttacctgttttttgtattt
tgatataaaaaatcGAAACATTGTTGTTCTGTTTGCATGACGACATCTTA
ACAAAGGATGGTGTCTCATCCTTCGTTAAGAGTTTGTTGCTACTAGCTTG
TTTGGATGACTTTGAGAGAAGCACATAACCAACTGCCAACATTAGTGTGG
ccatgaaaaataatttatgtttGTTTTGCCAAAATGCTTTGCCCA Coding sequence (CDS) from alignment at sc0000264:354977..359121+ >TCONS_00017289 ID=TCONS_00017289|Name=TCONS_00017289|organism=Clytia hemisphaerica|type=CDS|length=2814bp|location=Sequence derived from alignment at sc0000264:354977..359121+ (Clytia hemisphaerica)
AGAAAACCAGTTTTATATAATGTTATACTTTTTTATTACTCTGTCACTTG
TTTTATTGGGAGAATAAACTGTTTTTTAATAGCGATactaattttttcag
aaaaaatgtaCACAATAAATCTTTATTGCTGGGTCCTTATATTGGTCACA
GTGTTGATGTATTGCGTTGGTTTTTTTGGCGTTATAACTGCATTCATCAG
ATATCCGATACAAACTGGTGTAGTTCTCGCTGCTTATGTGGCTTTCCATC
TGTGTGATGTCAcacttgtttacttttttcacaGAGTATtggaaaagaaa
atatatcattGGAGATTTTTATACGCTGAATTCGCAGTGAGCTTTCTTGT
TGCATTGTTACAAACATCTGTTGTTGCAACAAATTGGTTTACAACATGGG
CTGTCTTGTCATTCGTTCACTGTTTGATCTTCAACATAATGAAAATCTTC
ACATCCTCTGACGAAAATGATGTCCCAAGGGAAGAAAATGACGACGAAAA
TGATGTCCCAAGGGAAGAAAATGACGACGAAAATGATGTCCCAAGGGAAG
AAAATGACGCCGAAAATGATGTCCCAAGGGAAGAAAATGACGACGAAAAT
GATGTCCCAAGGGAAGAAAATGACGACGAAAATGATGTCCCAAGGGAAGA
AAATGACGACGAAAATGATGTCCCAAGGGAAGAAAATGACGCCGAAAATG
ATGTCCCAAGGGAAGAAAATGACGACGAAAATGATGTCCCAAGGGAAGAA
AATGACGACGAAAATGATGTCCCAAGGGAAGAAAATGACGCCGAAAATGA
TGTCCCAAGGGAAGAAAATGACGACGAAAATGATGTCCCAAGGGAAGAAA
ATGACGACGAAAATGATGTCCCAAGGGAAGAAGATTGGATTAACTCAGTC
AACCGTCAAATATCGACTAGACCGGAGATCATCACATATTGTGAAGTCAT
CGAGCCTAAATTTTACTTTTGGTCATCAAAACAAGTCATTTGGAGGGAAG
AAAAAGCATTTGAATATGACTACTGGATAGCTTTAACAGACACTTCAAAG
ATCGGAAAATTCCAAACTGCGTGGATGGTGAGGGTGGACTTTGATATACA
GTTTGATGATAAAGAAACAGAGAAGTTATACAAAGAACATGTGAAAACAA
TGTTACACGAGTTACCAGAATATTGCAAAAATGCAACAAAGGTTACCAAG
ACTATCATGAAGATAGAAGGGAAAAGCGCAGATGAAATTCAACTTTATTA
TAACTGGCCAAAGATTTTACAAGCATTTATATCCCCTATTGTTCGCCTCA
TCAAATTATACAGCTGGATTTTCAAGAAACCCTTTGCTAATctttttaca
acaagaatcgtCATCACAAAAGTTATCTCAAACAAGAACATTGAAGTCGT
ATGTTGAAGAAAACCAGTTTTATATAATGTTATACTTTTTTATTACTCTG
TCACTTGTTTTATTGGGAGAATAAACTGTTTTTTAATAGCGATactaatt
ttttcagaaaaaatgtaCACAATAAATCTTTATTGCTGGGTCCTTATATT
GGTCACAGTGTTGATGTATTGCGTTGGTTTTTTTGGCGTTATAACTGCAT
TCATCAGATATCCGATACAAACTGGTGTAGTTCTCGCTGCTTATGTGGCT
TTCCATCTGTGTGATGTCAcacttgtttacttttttcacaGAGTATtgga
aaagaaaatatatcattGGAGATTTTTATACGCTGAATTCGCAGTGAGCT
TTCTTGTTGCATTGTTACAAACATCTGTTGTTGCAACAAATTGGTTTACA
ACATGGGCTGTCTTGTCATTCGTTCACTGTTTGATCTTCAACATAATGAA
AATCTTCACATCCTCTGACGAAAATGATGTCCCAAGGGAAGAAAATGACG
ACGAAAATGATGTCCCAAGGGAAGAAAATGACGACGAAAATGATGTCCCA
AGGGAAGAAAATGACGCCGAAAATGATGTCCCAAGGGAAGAAAATGACGA
CGAAAATGATGTCCCAAGGGAAGAAAATGACGACGAAAATGATGTCCCAA
GGGAAGAAAATGACGACGAAAATGATGTCCCAAGGGAAGAAAATGACGCC
GAAAATGATGTCCCAAGGGAAGAAAATGACGACGAAAATGATGTCCCAAG
GGAAGAAAATGACGACGAAAATGATGTCCCAAGGGAAGAAAATGACGCCG
AAAATGATGTCCCAAGGGAAGAAAATGACGACGAAAATGATGTCCCAAGG
GAAGAAAATGACGACGAAAATGATGTCCCAAGGGAAGAAGATTGGATTAA
CTCAGTCAACCGTCAAATATCGACTAGACCGGAGATCATCACATATTGTG
AAGTCATCGAGCCTAAATTTTACTTTTGGTCATCAAAACAAGTCATTTGG
AGGGAAGAAAAAGCATTTGAATATGACTACTGGATAGCTTTAACAGACAC
TTCAAAGATCGGAAAATTCCAAACTGCGTGGATGGTGAGGGTGGACTTTG
ATATACAGTTTGATGATAAAGAAACAGAGAAGTTATACAAAGAACATGTG
AAAACAATGTTACACGAGTTACCAGAATATTGCAAAAATGCAACAAAGGT
TACCAAGACTATCATGAAGATAGAAGGGAAAAGCGCAGATGAAATTCAAC
TTTATTATAACTGGCCAAAGATTTTACAAGCATTTATATCCCCTATTGTT
CGCCTCATCAAATTATACAGCTGGATTTTCAAGAAACCCTTTGCTAATct
ttttacaacaagaatcgtCATCACAAAAGTTATCTCAAACAAGAACATTG
AAGTCGTATGTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017289-exon-sc0000264-1491911889:354977..355304 | TCONS_00017289-exon-sc0000264-1491911889:354977..355304 | Clytia hemisphaerica | exon |
| TCONS_00017289-exon-sc0000264-1510915933:354977..355304 | TCONS_00017289-exon-sc0000264-1510915933:354977..355304 | Clytia hemisphaerica | exon |
| TCONS_00017289-exon-sc0000264-1575043694:354977..355304 | TCONS_00017289-exon-sc0000264-1575043694:354977..355304 | Clytia hemisphaerica | exon |
| TCONS_00017289-exon-sc0000264-1491911889:356202..359121 | TCONS_00017289-exon-sc0000264-1491911889:356202..359121 | Clytia hemisphaerica | exon |
| TCONS_00017289-exon-sc0000264-1510915933:356202..359121 | TCONS_00017289-exon-sc0000264-1510915933:356202..359121 | Clytia hemisphaerica | exon |
| TCONS_00017289-exon-sc0000264-1575043694:356202..359121 | TCONS_00017289-exon-sc0000264-1575043694:356202..359121 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000264 | supercontig | sc0000264:354977..359121 + |
Blast
The following BLAST results are available for this feature:
|
