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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017275 ID=TCONS_00017275|Name=TCONS_00017275|organism=Clytia hemisphaerica|type=transcript|length=1775bp
ATTCCATTAAATCTTAAAGTCATTGCTGGTAGCTCAAATAAATTTCACAG
TGCAACTGTCACCTGGGATAACCCACAAAACATCCAAGACTCAACCAATG
AAACAGATAAATCTATTCAATATAAATTCGAAATATGCAGATATAACAGA
TTCACtcaaatgaaatcaaaatgtGAAATTGAAGCTGACATTTTGAGAAA
CAAAGCTTCAACAACGCAATCGACCGAACAAACAAAATCCAGCAAGCTGT
ATGATTTTAATTTCCACCCTTCAAAATCAGATGAGCTCGTCTACCGTATT
ACTGGCATTGCACTGAATGGTACTGCAGGTCCAACAGCTGAAGCTATTGC
CAGGCTGAACTCCACCTTGGCACCAAAAGCTCCATATAATGTTACTGTTG
CTTTGCATACTGAAATTTACGCTGATACGCTCACGTTGTCATGGTTATCG
GCCGATCAAGGTGTCAATTACGTCAGATACAACATTAAAGGCAACAGTAC
AACAATGATGAAATCAGGATCCTCACCGATGGTTATCAGTGGTTTGCGAA
ACAGTACAGAATATGAATTCCAAGTTGGCGTTTATACTGAACGAAATGGT
GGCAGTNaaaaatgaaaaatggtaacccaaaggttccagatgttaaaatt
ttcccgaccttcagagctttagcgtgtcggaagaaaatttctacatcgag
taccagatagcagtcgggctggaacggtatcacgtgGGGAaatgagcgta
ggagttaggtaagcgtaggatctaggaagaaattttgtcggcggcaaggg
ctgaaagcagcagcctctcaccaacttttgcttgtTCTCCTACGTAGCTc
ttattctagcaaacgcccgccgcctttatgttcctgCCCACTTGAcatag
tttgctagtctagcgCAAGACAAGCGCAATCACTCGATTACTACAACCTA
GAAAgacaataaattttcaaattaagatATGCGGTCCAAATATATCAATG
AAGATctaatgattttgttttttcaacCCATAGAACCGAGACCAACTCCA
AAACCAGGAAACAATGGAACGATGCTGACATCATCACTTTTCTTATTACT
TTCATCTCTATTTGCTGTCATCAAATTCTTGTAAAGAGAATTGTAACAGA
ATACTCCCAGAATGCATTATAGTCACAAGAATCCAACTTTATTTACAACA
CACTTGAAATCTTTGGCAAACTCACATCACCGTCATTCANGGGGGGGGGA
AAATAGGGTACGCGGGACATGCCGCtgatcagggtcccttttttaggctc
tgaagatatctgacagggtccaaaatctactaattttcaagatgtgcatc
tgacagggtccacttttggttatttggacaatttttcagggaaaaaaatg
agaaaatttttcagtttttcgtctacttttagtcattttgccACTTGTTA
GGGTGGAAAttgactttcaattttttgtccTGACAGTGTCCATGTTgtcc
gtcaaggtcagtgcccccctcCCGGGATGGGTAGGAGCAAGGTTATATTA
TAGATATATGTATCGTATAGATAAGCTATTTGTAATTTAAGAAAGAAACT
TATACTTTAGATTTTATTACGAAAATATACACttgatttagaaaaataat
taaaatacgatTAGAAGGTTGAGTGTTACGAAAATTTGAACTTTGAAGAC
TGGTTTCAGGCTGGCGAAATTTCCATCAGTTTCTGCAGCTCCGGCTGCCA
TTTTGAGACAATTGACGGTTACCAG Run BLAST on NCBI transcript from alignment at sc0000264:85280..89382+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017275 ID=TCONS_00017275|Name=TCONS_00017275|organism=Clytia hemisphaerica|type=transcript|length=4103bp|location=Sequence derived from alignment at sc0000264:85280..89382+ (Clytia hemisphaerica)
ATTCCATTAAATCTTAAAGTCATTGCTGGTAGCTCAAATAAATTTCACAG
TGCAACTGTCACCTGGGATAACCCACAAAACATCCAAGACTCAACCAATG
AAACAGATAAATCTATTCAATATAAATTCGAAATATGCAGATATAACAGA
TTCACtcaaatgaaatcaaaatgtGAAATTGAAGCTGACATTTTGAGAAA
CAAAGCTTCAACAACGCAATCGACCGAACAAACAAAATCCAGCAAGCTGT
ATGATTTTAATTTCCACCCTTCAAAATCAGATGAGCTCGTCTACCGTATT
ACTGGCATTGCACTGAATGGTACTGCAGGTCCAACAGCTGAAGCTATTGC
CAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTA
CGAAATTGCCAACAAACCAAGCTATTTCTACTCTCAAGGTTTTCTCAGTA
CAGGCCATTCTAGCCCTAATTTAACGCTCAGTGGGTTAAGAATCAATGAA
ATCATATCCTTCAAAGTATGCAACTACCAACTTGGCACAACAATCACCAA
TGATTTGTTTTCATCGGCTACAGATATCAGTGTTAAACGTTCTGAACTGG
CAGGAAATACTTGTAAGTCATTTTTTGTCCGAATATGTCCGAAGTCAGTA
TCATACAGAGcgatcaaaaagaaaaacttttccaTGTATTTTGTATATTA
AAAAGTACCCTAtcgggggaaaaaatgtcgggggaaagtgatgaaaattt
tgaggaggtgacgaaatttttttcccgattatttttatccccgaccaaaa
tatTTACCCGATTTGTTTTTCCCAACCAAAAtgcaaatccaaatttttta
cgtCTCTATTAACCGAAatgaaattagtgctttaaacgtcgaattacaag
atctattttcgagctagtgaaggaaaccatttcatttggacaatttaatC
GGGAGAAGtaactaaattgtaaatttggtcggggaaaagtgacgaatttt
aaattttggtcgtggaaaagtgacgaaaatgcctctaaatttcgtatttt
tcccTAAATCCCACATGCCATATACGCCatataatacacttttttataag
aaaattgtgCAAATCGTATATAGAACTAAAACTAGAACTCCTGAGTAGGC
AAAGGTTATTTTTCATGATGAATCAAAGGTGTACTACAAAGTGTTCTCGA
CAGTATGGTCGAGGAGACATGGCTTCATCTAAAACTTTGAGACGTTAAAT
TCGAAAGATTTAAACTAATTATAATTGATTCCTAAGACCTTCACTCTATA
CAAAAGTACTCTATTCTCATAAATAGAGGCTGGAGATCATCAAATACTTT
CAAACCTTTCCAGCTGGCACTAAAGGTCAAACCCTTCTTTTTCAGTGGTA
CCAGGAATTCCATTAAATCTTAAAGTCATTGCTGGTAGCTCAAATAAATT
TCACAGTGCAACTGTCACCTGGGATAACCCACAAAACATCCAAGACTCAA
CCAATGAAACAGATAAATCTATTCAATATAAATTCGAAATATGCAGATAT
AACAGATTCACTGAAATGAAATCTAAATGTGAAATTGAAGCTGACATTTT
GAGAAACAAAGCTTCAACAACGCAATCGACCGAACAAACAAAATCCAGCA
AGCTGTATGATTTTAATTTCCACCCTTCAAAATCAGATGAGCTCGTCTAC
CGTATTACTGGCATTGCACTGAATGGTACTGCAGGTCCAACAGCTGAAGC
TATTGCCAGGCTGAACTCCACCTTGGGTAAGTATGATCTTGATATTTTCA
ATAAgctatatttcaattttattgaattttattcgtgtttttttataaga
acgaacgGAATATAAGCATATAATGTTTCGATGGCAAACCTACGGAACTT
TTACTTTCAGGTAGGCATTTGCGTTGTTTTATATGTTCGAACAAAAATAT
GTGCAATCAATTTCAAAACATAATCAAagtatttttaacaatttccaGCA
CCAAAAGCTCCATATAATGTTACTGTTGCTTTGCATACTGAAATTTACGC
TGATACGCTCACGTTGTCATGGTTATCGGCCGATCAAGGTGTCAATTACG
TCAGATACAACATTAAAGGCAACAGTACAACAATGATGAAATCAGGATCC
TCACCGATGGTTATCAGTGGTTTGCGAAACAGTACAGAATATGAATTCCA
AGTTGGCGTTTATACTGAACGAAATGGTGGCAGTNaaaaatgaaaaatgg
taacccaaaggttccagatgttaaaattttcccgaccttcagagctttag
cgtgtcggaagaaaatttctacatcgagtaccagatagcagtcgggctgg
aacggtatcacgtgGGGAaatgagcgtaggagttaggtaagcgtaggatc
taggaagaaattttgtcggcggcaagggctgaaagcagcagcctctcacc
aacttttgcttgtTCTCCTACGTAGCTcttattctagcaaacgcccgccg
cctttatgttcctgCCCACTTGAcatagtttgctagtctagcgCAAGACA
AGCGCAATCACTCGATTACTACAACCTAGAAAgacaataaattttcaaat
taagatATGCGGTCCAAATATATCAATGAAGATctaatgattttgttttt
tcaacCCATAGAACCGAGACCAACTCCAAAACCAGGAAACAATGGAACGA
TGCTGACATCATCACTTTTCTTATTACTTTCATCTCTATTTGCTGTCATC
AAATTCTTGTAAAGAGAATTGTAACAGAATACTCCCAGAATGCATTATAG
TCACAAGAATCCAACTTTATTTACAACACACTTGAAATCTTTGGCAAACT
CACATCACCGTCATTCANGGGGGGGGGAAAATAGGGTACGCGGGACATGC
CGCtgatcagggtcccttttttaggctctgaagatatctgacagggtcca
aaatctactaattttcaagatgtgcatctgacagggtccacttttggtta
tttggacaatttttcagggaaaaaaatgagaaaatttttcagtttttcgt
ctacttttagtcattttgccACTTGTTAGGGTGGAAAttgactttcaatt
ttttgtccTGACAGTGTCCATGTTgtccgtcaaggtcagtgcccccctcC
CGGGATGGGTAGGAGCAAGGTTATATTATAGATATATGTATCGTATAGAT
AAGCTATTTGTAATTTAAGAAAGAAACTTATACTTTAGATTTTATTACGA
AAATATACACttgatttagaaaaataattaaaatacgatTAGAAGGTTGA
GTGTTACGAAAATTTGAACTTTGAAGACTGGTTTCAGGCTGGCGAAATTT
CCATCAGTTTCTGCAGCTCCGGCTGCCATTTTGAGACAATTGACGGTTAC
CAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017275-exon-sc0000264-1491911889:85280..85607 | TCONS_00017275-exon-sc0000264-1491911889:85280..85607 | Clytia hemisphaerica | exon |
| TCONS_00017275-exon-sc0000264-1510915933:85280..85607 | TCONS_00017275-exon-sc0000264-1510915933:85280..85607 | Clytia hemisphaerica | exon |
| TCONS_00017275-exon-sc0000264-1575043694:85280..85607 | TCONS_00017275-exon-sc0000264-1575043694:85280..85607 | Clytia hemisphaerica | exon |
| TCONS_00017275-exon-sc0000264-1491911889:87714..87755 | TCONS_00017275-exon-sc0000264-1491911889:87714..87755 | Clytia hemisphaerica | exon |
| TCONS_00017275-exon-sc0000264-1510915933:87714..87755 | TCONS_00017275-exon-sc0000264-1510915933:87714..87755 | Clytia hemisphaerica | exon |
| TCONS_00017275-exon-sc0000264-1575043694:87714..87755 | TCONS_00017275-exon-sc0000264-1575043694:87714..87755 | Clytia hemisphaerica | exon |
| TCONS_00017275-exon-sc0000264-1491911889:87978..89382 | TCONS_00017275-exon-sc0000264-1491911889:87978..89382 | Clytia hemisphaerica | exon |
| TCONS_00017275-exon-sc0000264-1510915933:87978..89382 | TCONS_00017275-exon-sc0000264-1510915933:87978..89382 | Clytia hemisphaerica | exon |
| TCONS_00017275-exon-sc0000264-1575043694:87978..89382 | TCONS_00017275-exon-sc0000264-1575043694:87978..89382 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000264 | supercontig | sc0000264:85280..89382 + |
Blast
The following BLAST results are available for this feature:
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