TCONS_00017266 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017266
Unique NameTCONS_00017266
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length744

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017266 ID=TCONS_00017266|Name=TCONS_00017266|organism=Clytia hemisphaerica|type=transcript|length=744bp
CCTAATATTTTGAACATTATTATATTTCTGTGATAAGAATAAGACACAGG
CAGAAGGAATATTCCAAATCAATCAGGAAAGTAAGGGGCTTAAACTCCTT
ATTTTGACCTTGATTTCATAGTTAGGCTTAGGCGTATTTTATgttaatta
ttttgttttataattttCGTTCTTAGAAATTTTcccttttatatattttt
ttttctggtaTGTTATGTAGCAGGCAAGTTTGTGAAAAGGTCTGCTAAAT
GCTTAGGAAAGTTTGCATTAAATCAAATGACATTACATTACAGCCTGAAT
GTCTCGCAGAATCTTTAACTTCTAATTCACGAAGAAGGAATGTTTCGGCT
TTTGGGAATGGCTTGGCTTCGCCGTAATTGATAAAAGTTTACTGCACAGT
AAATATTATATGTCATTCAAGGATCCTCCGCGAATCAATTTTCATAATAA
ATTTAGGTTTTGTACTAGTTGAGCATTCTAGAGAGTAAGTATCCAGGCCT
TTCATCAAGTCGTCTGCTTTTTTATTGTAGagaattttttaatgtttaaa
tgCGTTTTAGCCTGTATCATtgattttttgctttgttttcatttttggtt
ACATTGTAAGTATTATTATCATTAGCATCAGCGATATTTTAAATCTTtcg
atattattattatatgaaaataaaaagaaacttgtaTTTTGTATTTGCTC
ACTACTTACTTGTACAGGGAtattaaacattttaaaagaaaatt
Run BLAST on NCBI

transcript from alignment at sc0000261:370299..371042

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017266 ID=TCONS_00017266|Name=TCONS_00017266|organism=Clytia hemisphaerica|type=transcript|length=744bp|location=Sequence derived from alignment at sc0000261:370299..371042 (Clytia hemisphaerica)
aattttcttttaaaatgtttaataTCCCTGTACAAGTAAGTAGTGAGCAA
ATACAAAAtacaagtttctttttattttcatataataataatatcgaAAG
ATTTAAAATATCGCTGATGCTAATGATAATAATACTTACAATGTaaccaa
aaatgaaaacaaagcaaaaaatcaATGATACAGGCTAAAACGcatttaaa
cattaaaaaattctCTACAATAAAAAAGCAGACGACTTGATGAAAGGCCT
GGATACTTACTCTCTAGAATGCTCAACTAGTACAAAACCTAAATTTATTA
TGAAAATTGATTCGCGGAGGATCCTTGAATGACATATAATATTTACTGTG
CAGTAAACTTTTATCAATTACGGCGAAGCCAAGCCATTCCCAAAAGCCGA
AACATTCCTTCTTCGTGAATTAGAAGTTAAAGATTCTGCGAGACATTCAG
GCTGTAATGTAATGTCATTTGATTTAATGCAAACTTTCCTAAGCATTTAG
CAGACCTTTTCACAAACTTGCCTGCTACATAACAtaccagaaaaaaaaat
atataaaagggAAAATTTCTAAGAACGaaaattataaaacaaaataatta
acATAAAATACGCCTAAGCCTAACTATGAAATCAAGGTCAAAATAAGGAG
TTTAAGCCCCTTACTTTCCTGATTGATTTGGAATATTCCTTCTGCCTGTG
TCTTATTCTTATCACAGAAATATAATAATGTTCAAAATATTAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009663XLOC_009663Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017266-exon-sc0000261-1491911889:370299..371042TCONS_00017266-exon-sc0000261-1491911889:370299..371042Clytia hemisphaericaexon
TCONS_00017266-exon-sc0000261-1510915933:370299..371042TCONS_00017266-exon-sc0000261-1510915933:370299..371042Clytia hemisphaericaexon
TCONS_00017266-exon-sc0000261-1575043694:370299..371042TCONS_00017266-exon-sc0000261-1575043694:370299..371042Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000261supercontigsc0000261:370299..371042 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.339098	0.202269	2.22439	3.07525	1.93786	1.16863	1.15403	0.582691	0.753556	0.931321	0.928228	0.497895	0.702439	0.566877	0.88636	1.25715	1.50598	0.943414	0.426863	0.382275	2.04699	2.39772	1.78831	1.08681	0	0	1.12111	1.2905	1.4637	1.56404
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017266 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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