TCONS_00017263 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017263
Unique NameTCONS_00017263
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1882

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017263 ID=TCONS_00017263|Name=TCONS_00017263|organism=Clytia hemisphaerica|type=transcript|length=1882bp
cgggggaattctattgtaatactcctgaaacaatcccacaatgcatcact
ttttcagaaaaatcaaaaactccgataaggtctattcaaCAAAAATTGTA
AGGTTATTTACAAAAAGTTTATCGTCTTTCAACTGCAATCCAAAGTTCTC
CTTTAGGTTGACCGCTCCTCGATTTGGGGTCTGGGACTAACTTATCTACA
GTTTTCGAACACGGTACAATCTTATACTTAATTAACAATCGTGCAATTAC
GATCTTAATTTCCATGGTCGCGAACCGTTGAGCAATGCAATTTCTTGGGC
CATGACCGAAACCACCCGAAACAAACGGATGTCTGCTAGATTTCCTTTCA
GCGCTGAAATTCTGCGGATCAAAAACTTCAGGATTAGGGAAATACTTTTC
ATCCTTAACAACGGCAGTTGCTGGCCAACGGACGAAAATATCTTTCGGGA
TGACGATCTCGGTCCCAGGGATTTTATAATCGGTGTCATCAGAGGATCGG
TCTAGATGAGTCATCGGGTACATACGTAAACTCTCTTGAAAGAATTTCTC
CATGTAAGACATACCCATAATGGTGGCATAATCGAACTGATTAGAACCAC
TGGTGTCAACAGCTTCCTGTACCTCCTCATAAAGCTTTTCTTGGAGATCT
GGATTTTTGGCCAAGAAGTATAACACCAAGGATGCTGCATTTGATACAGT
ATCGAACCCAGCTAAAAACATAATCAGCGAATTCGCGATAATGATTTTCT
CCATCTCCTCGGTTGATTCGTCCCCAGACTTCTCCCCATTCTCTTTCCGT
TCCTTCTCCAAAATCTCCATACAGACATCGATCAAATCGTTCCGCTTCTC
GCCGCTCGCTTTTCGCTCGTTAATCGCCTTCAAAACCAAAGCTGCAAAGA
AATCTTCTGTCTTTTGATCAAAGAACGGAAAATCAAGCCACCGCAACAAT
TTCGGACATACTAACAACAAAAGAAGGCCAACCATCAATTTCCAACTGAA
GGTTTTGCCGACCAACTTATCGGCATGTTTTCGAAACATATTCTCGGCAT
CATTAAGCGAATCATTCTCATAGCCAAAACCGGTCGAGATGATAACATCC
ATCGTATATCCTTTTAACATCTCTTTGGCTTCAAATTCAACCCCAATATT
CTTATCTAAGTATGTCTCACAGTTATCAGCAACTCTGTGGATCAGTGGAA
CCATGGCTTTCAGTTTGCCACTCGTAAAAACAGGTGTCAACGACGCTCTc
acatttttccatttttgtccTCGTAACTCAGTCAGCATGTACTGTAAATA
CCGGTTATTTTTTGTGTCCGGATTATAAGCATTATAACCAGTTGGTTTTC
GTTCCGTAAAATGAACTAATACGGATTTAGCCAGTTCCGGATCACGAATC
ATGAGTGCTTTAGTACCAAGAACACCATAAGTACCAACAACCTGAGCATT
TGGGAACCTCTTATAAGGTGAGTTGGTTATCTCACTAAACGCACACTTTC
CACTGAATAGATCCCATACAGCCTGGCTTCCGAACGGGAAATAGCCTGGA
TCCTCGGTAATCCCTTGTCGTCTCCAATATGTCATTTTGTACTTGACGTA
AAAATAGTAAGCAGTAAAGCTGACAATGCATGCTGCTAGTATAACCTGCC
ACATGGTGAGTACAGGCTAAAGCTGTTGGGCAAATCTCAAGTGAACCAGG
CTAATTGAAATGTTATTCTCCAGTTCAAACGTATCAAAATTGCAGCGAGG
AGTTTAGTTTTTGTGGAACATGCGCGTCTTTCCAAATCAAAGGCTAAATG
CAGAGTACTAATTATCTTTGAAACCTCAATTCTGATACAGATAGTTGCAA
CAAATATGCAAAGATATGCTTTTATACTTCCC
Run BLAST on NCBI

protein sequence of TCONS_00017263-protein

>TCONS_00017263-protein ID=TCONS_00017263-protein|Name=TCONS_00017263-protein|organism=Clytia hemisphaerica|type=polypeptide|length=511bp
MWQVILAACIVSFTAYYFYVKYKMTYWRRQGITEDPGYFPFGSQAVWDLF
SGKCAFSEITNSPYKRFPNAQVVGTYGVLGTKALMIRDPELAKSVLVHFT
ERKPTGYNAYNPDTKNNRYLQYMLTELRGQKWKNVRASLTPVFTSGKLKA
MVPLIHRVADNCETYLDKNIGVEFEAKEMLKGYTMDVIISTGFGYENDSL
NDAENMFRKHADKLVGKTFSWKLMVGLLLLLVCPKLLRWLDFPFFDQKTE
DFFAALVLKAINERKASGEKRNDLIDVCMEILEKERKENGEKSGDESTEE
MEKIIIANSLIMFLAGFDTVSNAASLVLYFLAKNPDLQEKLYEEVQEAVD
TSGSNQFDYATIMGMSYMEKFFQESLRMYPMTHLDRSSDDTDYKIPGTEI
VIPKDIFVRWPATAVVKDEKYFPNPEVFDPQNFSAERKSSRHPFVSGGFG
HGPRNCIAQRFATMEIKIVIARLLIKYKIVPCSKTVDKLVPDPKSRSGQP
KGELWIAVERR
Run BLAST on NCBI

transcript from alignment at sc0000261:299405..301286

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017263 ID=TCONS_00017263|Name=TCONS_00017263|organism=Clytia hemisphaerica|type=transcript|length=1882bp|location=Sequence derived from alignment at sc0000261:299405..301286 (Clytia hemisphaerica)
GGGAAGTATAAAAGCATATCTTTGCATATTTGTTGCAACTATCTGTATCA
GAATTGAGGTTTCAAAGATAATTAGTACTCTGCATTTAGCCTTTGATTTG
GAAAGACGCGCATGTTCCACAAAAACTAAACTCCTCGCTGCAATTTTGAT
ACGTTTGAACTGGAGAATAACATTTCAATTAGCCTGGTTCACTTGAGATT
TGCCCAACAGCTTTAGCCTGTACTCACCATGTGGCAGGTTATACTAGCAG
CATGCATTGTCAGCTTTACTGCTTACTATTTTTACGTCAAGTACAAAATG
ACATATTGGAGACGACAAGGGATTACCGAGGATCCAGGCTATTTCCCGTT
CGGAAGCCAGGCTGTATGGGATCTATTCAGTGGAAAGTGTGCGTTTAGTG
AGATAACCAACTCACCTTATAAGAGGTTCCCAAATGCTCAGGTTGTTGGT
ACTTATGGTGTTCTTGGTACTAAAGCACTCATGATTCGTGATCCGGAACT
GGCTAAATCCGTATTAGTTCATTTTACGGAACGAAAACCAACTGGTTATA
ATGCTTATAATCCGGACACAAAAAATAACCGGTATTTACAGTACATGCTG
ACTGAGTTACGAggacaaaaatggaaaaatgtgAGAGCGTCGTTGACACC
TGTTTTTACGAGTGGCAAACTGAAAGCCATGGTTCCACTGATCCACAGAG
TTGCTGATAACTGTGAGACATACTTAGATAAGAATATTGGGGTTGAATTT
GAAGCCAAAGAGATGTTAAAAGGATATACGATGGATGTTATCATCTCGAC
CGGTTTTGGCTATGAGAATGATTCGCTTAATGATGCCGAGAATATGTTTC
GAAAACATGCCGATAAGTTGGTCGGCAAAACCTTCAGTTGGAAATTGATG
GTTGGCCTTCTTTTGTTGTTAGTATGTCCGAAATTGTTGCGGTGGCTTGA
TTTTCCGTTCTTTGATCAAAAGACAGAAGATTTCTTTGCAGCTTTGGTTT
TGAAGGCGATTAACGAGCGAAAAGCGAGCGGCGAGAAGCGGAACGATTTG
ATCGATGTCTGTATGGAGATTTTGGAGAAGGAACGGAAAGAGAATGGGGA
GAAGTCTGGGGACGAATCAACCGAGGAGATGGAGAAAATCATTATCGCGA
ATTCGCTGATTATGTTTTTAGCTGGGTTCGATACTGTATCAAATGCAGCA
TCCTTGGTGTTATACTTCTTGGCCAAAAATCCAGATCTCCAAGAAAAGCT
TTATGAGGAGGTACAGGAAGCTGTTGACACCAGTGGTTCTAATCAGTTCG
ATTATGCCACCATTATGGGTATGTCTTACATGGAGAAATTCTTTCAAGAG
AGTTTACGTATGTACCCGATGACTCATCTAGACCGATCCTCTGATGACAC
CGATTATAAAATCCCTGGGACCGAGATCGTCATCCCGAAAGATATTTTCG
TCCGTTGGCCAGCAACTGCCGTTGTTAAGGATGAAAAGTATTTCCCTAAT
CCTGAAGTTTTTGATCCGCAGAATTTCAGCGCTGAAAGGAAATCTAGCAG
ACATCCGTTTGTTTCGGGTGGTTTCGGTCATGGCCCAAGAAATTGCATTG
CTCAACGGTTCGCGACCATGGAAATTAAGATCGTAATTGCACGATTGTTA
ATTAAGTATAAGATTGTACCGTGTTCGAAAACTGTAGATAAGTTAGTCCC
AGACCCCAAATCGAGGAGCGGTCAACCTAAAGGAGAACTTTGGATTGCAG
TTGAAAGACGATAAACTTTTTGTAAATAACCTTACAATTTTTGttgaata
gaccttatcggagtttttgatttttctgaaaaagtgatgcattgtgggat
tgtttcaggagtattacaatagaattcccccg

Coding sequence (CDS) from alignment at sc0000261:299405..301286

>TCONS_00017263 ID=TCONS_00017263|Name=TCONS_00017263|organism=Clytia hemisphaerica|type=CDS|length=1536bp|location=Sequence derived from alignment at sc0000261:299405..301286 (Clytia hemisphaerica)
ATGTGGCAGGTTATACTAGCAGCATGCATTGTCAGCTTTACTGCTTACTA
TTTTTACGTCAAGTACAAAATGACATATTGGAGACGACAAGGGATTACCG
AGGATCCAGGCTATTTCCCGTTCGGAAGCCAGGCTGTATGGGATCTATTC
AGTGGAAAGTGTGCGTTTAGTGAGATAACCAACTCACCTTATAAGAGGTT
CCCAAATGCTCAGGTTGTTGGTACTTATGGTGTTCTTGGTACTAAAGCAC
TCATGATTCGTGATCCGGAACTGGCTAAATCCGTATTAGTTCATTTTACG
GAACGAAAACCAACTGGTTATAATGCTTATAATCCGGACACAAAAAATAA
CCGGTATTTACAGTACATGCTGACTGAGTTACGAggacaaaaatggaaaa
atgtgAGAGCGTCGTTGACACCTGTTTTTACGAGTGGCAAACTGAAAGCC
ATGGTTCCACTGATCCACAGAGTTGCTGATAACTGTGAGACATACTTAGA
TAAGAATATTGGGGTTGAATTTGAAGCCAAAGAGATGTTAAAAGGATATA
CGATGGATGTTATCATCTCGACCGGTTTTGGCTATGAGAATGATTCGCTT
AATGATGCCGAGAATATGTTTCGAAAACATGCCGATAAGTTGGTCGGCAA
AACCTTCAGTTGGAAATTGATGGTTGGCCTTCTTTTGTTGTTAGTATGTC
CGAAATTGTTGCGGTGGCTTGATTTTCCGTTCTTTGATCAAAAGACAGAA
GATTTCTTTGCAGCTTTGGTTTTGAAGGCGATTAACGAGCGAAAAGCGAG
CGGCGAGAAGCGGAACGATTTGATCGATGTCTGTATGGAGATTTTGGAGA
AGGAACGGAAAGAGAATGGGGAGAAGTCTGGGGACGAATCAACCGAGGAG
ATGGAGAAAATCATTATCGCGAATTCGCTGATTATGTTTTTAGCTGGGTT
CGATACTGTATCAAATGCAGCATCCTTGGTGTTATACTTCTTGGCCAAAA
ATCCAGATCTCCAAGAAAAGCTTTATGAGGAGGTACAGGAAGCTGTTGAC
ACCAGTGGTTCTAATCAGTTCGATTATGCCACCATTATGGGTATGTCTTA
CATGGAGAAATTCTTTCAAGAGAGTTTACGTATGTACCCGATGACTCATC
TAGACCGATCCTCTGATGACACCGATTATAAAATCCCTGGGACCGAGATC
GTCATCCCGAAAGATATTTTCGTCCGTTGGCCAGCAACTGCCGTTGTTAA
GGATGAAAAGTATTTCCCTAATCCTGAAGTTTTTGATCCGCAGAATTTCA
GCGCTGAAAGGAAATCTAGCAGACATCCGTTTGTTTCGGGTGGTTTCGGT
CATGGCCCAAGAAATTGCATTGCTCAACGGTTCGCGACCATGGAAATTAA
GATCGTAATTGCACGATTGTTAATTAAGTATAAGATTGTACCGTGTTCGA
AAACTGTAGATAAGTTAGTCCCAGACCCCAAATCGAGGAGCGGTCAACCT
AAAGGAGAACTTTGGATTGCAGTTGAAAGACGATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009660XLOC_009660Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017263-proteinTCONS_00017263-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017263-exon-sc0000261-1491911889:299405..301286TCONS_00017263-exon-sc0000261-1491911889:299405..301286Clytia hemisphaericaexon
TCONS_00017263-exon-sc0000261-1510915933:299405..301286TCONS_00017263-exon-sc0000261-1510915933:299405..301286Clytia hemisphaericaexon
TCONS_00017263-exon-sc0000261-1575043694:299405..301286TCONS_00017263-exon-sc0000261-1575043694:299405..301286Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000261supercontigsc0000261:299405..301286 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.83426	1.57249	1.15251	1.245	6.46305	6.59867	24.0739	27.4638	28.3102	40.3518	55.1836	17.7568	40.7813	24.5556	45.1732	136.537	11.3962	13.6152	27.3558	26.0327	27.2861	27.0862	32.2632	47.1605	74.6915	85.689	51.1627	74.3927	60.4118	25.8207
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002401Cyt_P450_E_grp-I
IPR001128Cyt_P450
IPR017972Cyt_P450_CS
Vocabulary: Molecular Function
TermDefinition
GO:0005506iron ion binding
GO:0020037heme binding
GO:0016705oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
molecular_function GO:0020037 heme binding
molecular_function GO:0005506 iron ion binding
molecular_function GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
Blast
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BLAST of TCONS_00017263 vs. Swiss-Prot (Human)
Match: CP3A4 (Cytochrome P450 3A4 OS=Homo sapiens GN=CYP3A4 PE=1 SV=4)

HSP 1 Score: 194.512 bits (493), Expect = 5.068e-54
Identity = 133/439 (30.30%), Postives = 223/439 (50.80%), Query Frame = -1 
Query:  122 ALMIRDPELAKSVLVH-----FTERKPTGYNAYNPDTKNNRYLQYMLTELRGQKWKNVRASLTPVFTSGKLKAMVPLIHRVADNCETYL--DKNIGVEFEAKEMLKGYTMDVIISTGFGYENDSLNDAENMFRKHADKLVGKTFSWKXXXXXXXXXXXXXXXXXLDFPFFDQKTEDFFAALVLKAINERKASGEK-RNDLIDVCMEILEKERKENGEKSGDESTEEMEKIIIANSLIMFLAGFDTVSNAASLVLYFLAKNPDLQEKLYEEVQEAVDTSGSNQFDYATIMGMSYMEKFFQESLRMYPMTHLDRSSDDTDYKIPGTEIVIPKDIFVRWPATAVVKDEKYFPNPEVFDPQNFSAERKSSRHPFVSGGFGHGPRNCIAQRFATMEIKIVIARLLIKYKIVPCSKTVDKLVPDPKSRSG--QPKGELWIAVERR 1408
             L I DP++ K+VLV      FT R+P G   +         ++  ++    ++WK +R+ L+P FTSGKLK MVP+I +  D     L  +   G     K++   Y+MDVI ST FG   DSLN+ ++ F ++  KL+   F     + + +      +L  L+   F ++  +F    V +    R    +K R D + + ++      + + E    ++  ++E  ++A S+I   AG++T S+  S ++Y LA +PD+Q+KL EE+   +       +D  T++ M Y++    E+LR++P+          D +I G  + IPK + V  P+ A+ +D KY+  PE F P+ FS + K +  P++   FG GPRNCI  RFA M +K+ + R+L  +   PC +T    +P   S  G  QP+  + + VE R
Sbjct:   81 VLAITDPDMIKTVLVKECYSVFTNRRPFGPVGF---------MKSAISIAEDEEWKRLRSLLSPTFTSGKLKEMVPIIAQYGDVLVRNLRREAETGKPVTLKDVFGAYSMDVITSTSFGVNIDSLNNPQDPFVENTKKLLRFDFLDPFFLSITVFPFLIPILEVLNICVFPREVTNFLRKSVKRMKESRLEDTQKHRVDFLQLMID-----SQNSKETESHKALSDLE--LVAQSIIFIFAGYETTSSVLSFIMYELATHPDVQQKLQEEIDAVLPNKAPPTYD--TVLQMEYLDMVVNETLRLFPIAMRLERVCKKDVEING--MFIPKGVVVMIPSYALHRDPKYWTEPEKFLPERFSKKNKDNIDPYIYTPFGSGPRNCIGMRFALMNMKLALIRVLQNFSFKPCKETQ---IPLKLSLGGLLQPEKPVVLKVESR 496
The following BLAST results are available for this feature:
BLAST of TCONS_00017263 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CP3A45.068e-5430.30Cytochrome P450 3A4 OS=Homo sapiens GN=CYP3A4 PE=1... [more]
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