TCONS_00017261 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017261
Unique NameTCONS_00017261
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length662

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017261 ID=TCONS_00017261|Name=TCONS_00017261|organism=Clytia hemisphaerica|type=transcript|length=662bp
CTAGTTAGTGGTATTAGAATAGGAAATTTCGTGTCGAACAGAAGAGGTGC
ATTTCCTAATCTTCCTTTGCATCGTAGAATACCGTGAGCGTCTGTGAAAA
CGTTGAGATTTCTCTTCAGTTGGTTGTGCTCGGATGAGATAAATTCTTTC
TGGACTTCAAGGATCCATAGCTTCTTGGTGTCCACCATATGATCGATTGA
TTCTTCGGTATCATCACTCTTATTTAGTTTAGTATTTTGAACACTCTGTT
TCAAGTTTCTCACGAACCTTAAAACCTTGGCCGTAACCCGAAATAAACGG
GTTAACGAACCGCATCTTCTTGGATCGAGGATACCCAGGGACCTCGACCC
CATCACTAAAAATTGTATGACTTTCATCAGATTGTGGTATTTCACACGAA
TCTGGATCAGGATACTCACGAACAATATTATAGTTGTCAAAAAGAACGAG
ATTAAATTCAGGATTAGCAGCTAAACAAGTAACTTTCTCTTCGTCATTAA
GGTCAGAGAATTCAAATTCAGTCccaaaaaataaattaacaGTTTCTGTA
GAATGTTctcattgttttgaaaatttatcaccTGGCTTGAGATCTGGCCA
ATGTTCTTTGGAGAAGGATAAAAATTCGGGACCGTTCAACCACCTCTTAT
TTTGCACAATTT
Run BLAST on NCBI

protein sequence of TCONS_00017261-protein

>TCONS_00017261-protein ID=TCONS_00017261-protein|Name=TCONS_00017261-protein|organism=Clytia hemisphaerica|type=polypeptide|length=125bp
MKVIQFLVMGSRSLGILDPRRCGSLTRLFRVTAKVLRFVRNLKQSVQNTK
LNKSDDTEESIDHMVDTKKLWILEVQKEFISSEHNQLKRNLNVFTDAHGI
LRCKGRLGNAPLLFDTKFPILIPLT
Run BLAST on NCBI

transcript from alignment at sc0000261:58882..59543

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017261 ID=TCONS_00017261|Name=TCONS_00017261|organism=Clytia hemisphaerica|type=transcript|length=662bp|location=Sequence derived from alignment at sc0000261:58882..59543 (Clytia hemisphaerica)
AAATTGTGCAAAATAAGAGGTGGTTGAACGGTCCCGAATTTTTATCCTTC
TCCAAAGAACATTGGCCAGATCTCAAGCCAggtgataaattttcaaaaca
atgagAACATTCTACAGAAACtgttaatttattttttggGACTGAATTTG
AATTCTCTGACCTTAATGACGAAGAGAAAGTTACTTGTTTAGCTGCTAAT
CCTGAATTTAATCTCGTTCTTTTTGACAACTATAATATTGTTCGTGAGTA
TCCTGATCCAGATTCGTGTGAAATACCACAATCTGATGAAAGTCATACAA
TTTTTAGTGATGGGGTCGAGGTCCCTGGGTATCCTCGATCCAAGAAGATG
CGGTTCGTTAACCCGTTTATTTCGGGTTACGGCCAAGGTTTTAAGGTTCG
TGAGAAACTTGAAACAGAGTGTTCAAAATACTAAACTAAATAAGAGTGAT
GATACCGAAGAATCAATCGATCATATGGTGGACACCAAGAAGCTATGGAT
CCTTGAAGTCCAGAAAGAATTTATCTCATCCGAGCACAACCAACTGAAGA
GAAATCTCAACGTTTTCACAGACGCTCACGGTATTCTACGATGCAAAGGA
AGATTAGGAAATGCACCTCTTCTGTTCGACACGAAATTTCCTATTCTAAT
ACCACTAACTAG

Coding sequence (CDS) from alignment at sc0000261:58882..59543

>TCONS_00017261 ID=TCONS_00017261|Name=TCONS_00017261|organism=Clytia hemisphaerica|type=CDS|length=375bp|location=Sequence derived from alignment at sc0000261:58882..59543 (Clytia hemisphaerica)
ATGAAAGTCATACAATTTTTAGTGATGGGGTCGAGGTCCCTGGGTATCCT
CGATCCAAGAAGATGCGGTTCGTTAACCCGTTTATTTCGGGTTACGGCCA
AGGTTTTAAGGTTCGTGAGAAACTTGAAACAGAGTGTTCAAAATACTAAA
CTAAATAAGAGTGATGATACCGAAGAATCAATCGATCATATGGTGGACAC
CAAGAAGCTATGGATCCTTGAAGTCCAGAAAGAATTTATCTCATCCGAGC
ACAACCAACTGAAGAGAAATCTCAACGTTTTCACAGACGCTCACGGTATT
CTACGATGCAAAGGAAGATTAGGAAATGCACCTCTTCTGTTCGACACGAA
ATTTCCTATTCTAATACCACTAACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009658XLOC_009658Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017261-proteinTCONS_00017261-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017261-exon-sc0000261-1491911889:58882..59543TCONS_00017261-exon-sc0000261-1491911889:58882..59543Clytia hemisphaericaexon
TCONS_00017261-exon-sc0000261-1510915933:58882..59543TCONS_00017261-exon-sc0000261-1510915933:58882..59543Clytia hemisphaericaexon
TCONS_00017261-exon-sc0000261-1575043694:58882..59543TCONS_00017261-exon-sc0000261-1575043694:58882..59543Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000261supercontigsc0000261:58882..59543 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.266941	0	0	0	0	0	0	0	0.0846164	0.254055	0	0.324341	0.110778	0.112652	0.143162	0	0.328924	0	0	0.285533	0	0	0	0.0950226	0.258819	0.0855555	1.05392	0.2044	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017261 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top