TCONS_00017254 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017254
Unique NameTCONS_00017254
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2781

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017254 ID=TCONS_00017254|Name=TCONS_00017254|organism=Clytia hemisphaerica|type=transcript|length=2781bp
tggatTTGTCGTTACTTGAATTGACTTAAACCTGAATTTGTAATTTATTA
TTAAAGGcacataaaataaaatattacccAAATTTCGTTTGGGGCACTTA
TTAATAAATTGAACAATATCACTTTGGAAGAATCGCACAATTACACAATT
ATTTTTCTGGTGTGGACGGAACCTTAAGAATCCAAGATGGCGTTAGTAGC
ATCTGATATAAAGGGGATGCTTAGCATCACCATAAAATCTCGACACGATT
CACATACTGATCAATACAATCGTATTTTCATGGTGAAAATTTTACTGGTC
ACATCCCTGGTTATGGGTATTTCATGGTATTCTGATTCGATCTCCTGTAT
TATTCCAGAGGCTCACGGTATCAGTGGAGGATTTGTCTCGCAAACCTGTT
GGATtcagggggtatatgtatacaAAGAATTGAAAGACAGAATTGATGAG
GTGGCTTATTATGGAATCCCAAAGGATATTACATTGGATGGATATTTGAC
GAATACAGAAAATAAAGAACTATGTCCAATGCATCCAAAACTAGACAAGA
AACCTAGCGAACATTGTACTCACATGCACAAGACTTTTTTCTTACAGTAT
CAATATTTCCCCTTCTTGGTCGCATCATTCGCTATCTTGTTCTACGTACC
CTACATTTTCTTCCGCACCGCAAATGCCGATCTCATCTCTCTCAAGAACA
ACATCAAAGAAGGAGAAGCAGATGCTGAAAATATCGCAAAGCATTATTTC
TCAAAAACCACCAATCCACAACGTAACAATATGCTACGAATCGTattcaa
tattttgattaaGATTCTTTATTTAGTGGCCAACCTGGTTTGTTTCTTAG
GGCTTGATCGCCTACTGAACGGAGAGTACATTGGATACGGTAATAAATGG
ATTCAATGGTCGTCACTCGATAATGCTGTTCAATACGATTATATGGGAAT
GAGAGACCACCCCAAACCAGGAAACGAGCTCCTCCCACCATTCGGTTACT
GTGAGGTCCACGCCTCCGCCAAAGACATCAAAGAATCATACGCCAACAAA
CATAAATTCGTATGTGAGTTATCACAAAACGTGTTATACCAATACGCCCT
TGTTGTCTTGTGGTTCGCCCTTATCATTGGAATTGTTGTATCGTGTGTTG
GAGTTCTTGTCTTGTTCATCCATTATGCTATCGGTATCTTCGGATTCAAA
GCACAAGGACCAACCGGAAAGAAGATCTTCAAAATGCTCTCCTTCAGGGA
GTTGGAATACTTGGAGTTCATCCGTAAGCGAGATATTGCTCTCTACGGGG
AAGTACTTGACAAACTGAAGGACATCAAACTTGGTCCACACGCACCAAGG
GAGGAGTACCCACCCAGAAATGGAGATGACATTCCATTGTACCCAACCAA
AGGACAATATTCAGACAAGCCTGGATACCAATTGTAAAGAGGAAGAGAAG
ACGGGAACACAGTCTAAGTAATCATTTTAGTCCGGTTGCTTGAGAttgtt
tttaaacttgaaaCATTGTGAGGTCCAGCTTCTTTCACCACCATGGATGT
GTTTTTTTAAAATGAGGATTTATTATTATTCATGATTTGGGTATAGAGGC
TAGTTAAGCGAGAGCACCATCGGCTAATTCAGTATGAAAAGTTCTTATAC
ACTGTGTGGGAGAACATAGTTTTTTCGCTCTCCCTCGCATGCACTTCACT
TTCTATAACATGCACTTTAGTATGTTTTGTAAGTTATTTTTCTAGAAATT
CGAAGATAAAAAGCGATATTTTTAAGAAGTAAACTTTTTGTATGAACAGT
AGTGAAATTTATGGCTATAGGGCGTCAATGGCGTTTCACGCCCAAAAGCC
ACCCACGAAGCGAAGGGAGTAGtgaagtattttttgaaatgaaataattt
ttattttaactttgtAGATagatttacttttttcaaatagttCCAAAGAT
TGATCTATGGTGGAGATCCCTAAAAGTTATTCGAAATCCTTATAAGGAAT
TCCCCAGCTCTCTCCACCATAGATTTCCTTTATCAGATTATTTTGTGTGT
GTGTTTGTTTGTGAgtgtattttatgttttttattttatggagacgccat
tttttgtttgtttttgacaTCATGTTCCTTTTTATTGTCAACGGCGTATA
ATGCTCACTAATTCATCTACCACTATGTACTTTGAGAGCTTGTTCTCAGA
AAGTACTATCGTGTAAGCCAGGCTTTAGAAGTAATGCTTGAACTAGAATA
TTCGAATTCTTGAGCATTTTGTTGTTTACTTTTGCCTGAATTTGTTTAGG
GTTTTCGTATAACTTTTGTTCCAatttaattaaatgactttaaTAATAAC
GCTTTTTCTTTAAATCGCATTCCAACTAtattgtaaaaaactttttatca
tACTTTTTTCATATGTTTGTAAGAGGGAAGTATTATTGACGGATTCGAGG
TGACCGAGTGTATAACTCGAACCCGTAATTGGTATATTTTTCAACTCGAT
TTATCGGCAACTCGGTCGCTTCAAATCTTTCTAGTTTATAGACTATACTA
CCTAGTTCCTTAAActttttcaacaatttctaaaaaattcgtATTATTTT
CTTATACGACCAACTCTAacataaaaattttaattgtaaaacattttcaa
aaattttcctacAAAAATTACATCAAGTTTTACGATAATTTATGTATATT
TCTTCACAgaagtttatttgaaaaatatattttggcaAGTGTCGATAAAA
AAGGGGTGtggttgtttgtttttttcgagGG
Run BLAST on NCBI

transcript from alignment at sc0000261:337212..342400-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017254 ID=TCONS_00017254|Name=TCONS_00017254|organism=Clytia hemisphaerica|type=transcript|length=5189bp|location=Sequence derived from alignment at sc0000261:337212..342400- (Clytia hemisphaerica)
TGGATTTGTCGTTACTTGAATTGACTTAAACCTGAATTTGTAATTTATTA
TTAAAGGCACATAAAATAAAATATTACCCAAATTTCGTTTGGGGCACTTA
TTAATAAATTGAACAATATCACTTTGGAAGAATCGCACAATTACACAATT
ATTTTTCTGGTGTGGACGGAACCTTAAGAATCCAAGATGGCGTTAGTAGC
ATCTGATATAAAGGGGATGCTTAGCATCACCATAAAATCTCGACACGATT
CACATACTGATCAATACAATCGTATTTTCATGGTGAAAATTTTACTGGTC
ACATCCCTGGTTATGGGTATTTCATGGTATTCTGATTCGATCTCCTGTAT
TATTCCAGGTAAGTGCAACCACGAATAATCCATTTATTCTCCTATTCCAA
AATTTTGTTTATCTATAGTCTTGAAGAAGCATCACCATGTCTTTTGTGGC
GACAGACCTTAAGGGTCTGCTTACATTGAACATCAAATCGAGACACGATG
GATACCTTGATCAATATAATCGTATTTTCATGGTCAAACTTCTTATGGTG
ACAACCATTGTTATGGGATTGAGTTGGTATGGGGATTCTATCAACTGTAT
TATTCCTGGTAAGGTTGACCATTCATGAACATGTTGAGAACAATGGTCAC
ACACGATGTTAAATGTTTTTCTAATGTGTTTGTTGGTTTTTCCCCTTCTC
ACTCTGACTAATGACTAATATCTTGGGGAGATTATTCTAATATTGGCTAG
CCTATTGTAACAAACACATTTGGGATAAGGCTAAGAACATTTGAATTTCA
TGTCTTTACTAAATTTTGTTATTGAGACAGGGGTGTAGGTTTCAAAATTC
ATCAAACTAACATTGCAAACGATATAGGTATGTAACAAATCCCTTTACTA
CAAATAATCCCAATTCACTAACCCCCGTCTTTGTTCTTTAGAGGCTCACG
GTATCAGTGGAGGATTTGTCTCGCAAACCTGTTGGATTCAGGGGGTATAT
GTATACAAAGAATTGAAAGACAGAATTGATGAGGTGGCTTATTATGGAAT
CCCAAAGGATATTACATTGGATGGATATTTGACGAATACAGAAAATAAAG
AACTATGTCCAATGCATCCAAAACTAGACAAGAAACCTAGCGAACATTGT
ACTCACATGCACAAGACTTTTTTCTTACAGGTAAGTTACTAGTCTAGAAT
GACTTCGACAAAAGCACGCCTTTTACTTTTATTTTAGTTTTATTTGGATT
CTAGAACAAAGTGTTTTAAAATATTCTTTTGGAAATTCCTAAAAAATAGC
AAATTTTAGACGCTGTCTTCATTTAAAAACAGAAGACATTTCTTTCTATC
TTTATCTAGTCTGTAAAATATTTTTATCTTCGGCGTAATTTGACTGCCAT
CTACCACAGAAGCTATAGATCAAAACATACAAGTTTTTTTTATAAGAACA
TCCAAAAATTTTGAAGCCTTCGGACAGCTTCGGATGCTCTTAACTTTTTG
AGATTTAAGCCTGAAAATTTTATTAGCTTGTGCTTATTTTCTCCTTTTTG
TGAGTATTTTTGTCCGCTTTTCTAAGAAATCGGGTGTTTTAGAGTTCGCG
AAGCCTTGAAACTTCCTTAACATGCTTTTTTAACATTTTGGCAATCAAAG
CCTTATGTTCTTATATAATTTGTTCTTATAAAAAAACGTGTATTACAAAA
GCAAAACATACTTCAAGTTTATAATTGCTGATGAGCAATTAAGACAAATT
CCGGTGTGGTGTTGTTATAGAAAATACCTTTTTTGTCTATTTTCCTCTTT
CTTTTGATGCAGGAGAAAATGTCATAGACTAAATATGGCTCTCTTTAAAT
CATCATTTTAAAATCATGATACCAAAGTTGAAATCAAATTTCATTTCCCT
TACTGTGGTGTTGAAAACATTTGGACCTTACTCCGATATCTTGTCAAAGT
TGAATTTCCTTTTTCTCGCGTTTTCCGGTAAATTGAAGTTTCGTCCTTAA
AAAACATTAAAATCGTAATCAGTACATGTTTCTTTCTCATGTAAAAGCAA
AATTATTCCACTAAAATAAAATAATGACTTTGAGTCTAGTATCAAATGTA
TGAAATAGAGAGAATTTAATCTGAAATACTTGAAACTTTCAAATAGTTGA
GAAGATATCCTTCACCTTGCCCAATGGTGAATAAAGAATCTCTCAGAATA
TCGAAAAGAAAATCGTGATCTAAGCGACGATAAACTTCCAATAGTTGTAG
AGAGTTTTTATCTTCTCCTCATAAAGTGCTTGATAAGCTAATAGAGCGTT
ACATACTATAATAAAGAGTTGACACAATATCTGTGTTTCAAATTCAGAGA
TAAACTTCCCATAACCCAAACTCTCATTCTCTTTTCTTTCAGTATCAATA
TTTCCCCTTCTTGGTCGCATCATTCGCTATCTTGTTCTACGTACCCTACA
TTTTCTTCCGCACCGCAAATGCCGATCTCATCTCTCTCAAGAACAACATC
AAAGAAGGAGAAGCAGATGCTGAAAATATCGCAAAGCATTATTTCTCAAA
AACCACCAATCCACAACGTAACAATATGCTACGAATCGTATTCAATATTT
TGATTAAGATTCTTTATTTAGTGGCCAACCTGGTTTGTTTCTTAGGGCTT
GATCGCCTACTGAACGGAGAGTACATTGGATACGGTAATAAATGGATTCA
ATGGTCGTCACTCGATAATGCTGTTCAATACGATTATATGGGAATGAGAG
ACCACCCCAAACCAGGTTTGTTTACTTAATCCGAATCGGTTTCATATTTC
CCGATAATTATTCCCCGGTTCTCCTCACTGTTCAACGTATGACATCACCC
TAAACTTGTTTTAAACTTTATGTTAATTCTGAATCGGTTTTTCAATACTC
CCCGGATTTCTCAGCGTCAATTTTCTGGCTCAAAAAGGACGCCGTTAAAC
GGTCTTTCGCCGGCGCGGAAATAATTGCTTCATTCTATAGAATGATAGTC
TAATACCTCGGGATTGTTACACTCAAGCCTTTTACAAATACAGTCCTAGA
TTCTTAAAACTACCAGTCGATATACCTTGCATGTGACTCCTTTGAACAAA
CAAATATTAATTTCTTTTCCCACAGGAAACGAGCTCCTCCCACCATTCGG
TTACTGTGAGGTCCACGCCTCCGCCAAAGACATCAAAGAATCATACGCCA
ACAAACATAAATTCGTATGTGAGTTATCACAAAACGTGTTATACCAATAC
GCCCTTGTTGTCTTGTGGTTCGCCCTTATCATTGGAATTGTTGTATCGTG
TGTTGGAGTTCTTGTCTTGTTCATCCATTATGCTATCGGTATCTTCGGAT
TCAAGTATGTTTTATTTTCTTTCAAATTATTCTTTTTCATGCTTAGATTT
CGAATACAAGTTATGAATTTGCGTCAAATTTCCTTATGTATCCCTCTAGA
AAACGTAACGTAACCCAGCTGACACGCTCGTAACGCCCATATAACGTTAA
AATGACGCCGTGTGCTAGCTGGATATCAACAACATAGAACAGCTTTTCAG
CTTTTCAAATTTTCAGCATTTTGTTTATAACTAACCATTCTCTTTTTCTA
TTTACAGAGCACAAGGACCAACCGGAAAGAAGATCTTCAAAATGCTCTCC
TTCAGGGAGTTGGAATACTTGGAGTTCATCCGTAAGCGAGATATTGCTCT
CTACGGGGAAGTACTTGACAAACTGAAGGACATCAAACTTGGTCCACACG
CACCAAGGGAGGAGTACCCACCCAGAAATGGAGATGACATTCCATTGTAC
CCAACCAAAGGACAATATTCAGACAAGCCTGGATACCAATTGTAAAGAGG
AAGAGAAGACGGGAACACAGTCTAAGTAATCATTTTAGTCCGGTTGCTTG
AGATTGTTTTTAAACTTGAAACATTGTGAGGTCCAGCTTCTTTCACCACC
ATGGATGTGTTTTTTTAAAATGAGGATTTATTATTATTCATGATTTGGGT
ATAGAGGCTAGTTAAGCGAGAGCACCATCGGCTAATTCAGTATGAAAAGT
TCTTATACACTGTGTGGGAGAACATAGTTTTTTCGCTCTCCCTCGCATGC
ACTTCACTTTCTATAACATGCACTTTAGTATGTTTTGTAAGTTATTTTTC
TAGAAATTCGAAGATAAAAAGCGATATTTTTAAGAAGTAAACTTTTTGTA
TGAACAGTAGTGAAATTTATGGCTATAGGGCGTCAATGGCGTTTCACGCC
CAAAAGCCACCCACGAAGCGAAGGGAGTAGTGAAGTATTTTTTGAAATGA
AATAATTTTTATTTTAACTTTGTAGATAGATTTACTTTTTTCAAATAGTT
CCAAAGATTGATCTATGGTGGAGATCCCTAAAAGTTATTCGAAATCCTTA
TAAGGAATTCCCCAGCTCTCTCCACCATAGATTTCCTTTATCAGATTATT
TTGTGTGTGTGTTTGTTTGTGAGTGTATTTTATGTTTTTTATTTTATGGA
GACGCCATTTTTTGTTTGTTTTTGACATCATGTTCCTTTTTATTGTCAAC
GGCGTATAATGCTCACTAATTCATCTACCACTATGTACTTTGAGAGCTTG
TTCTCAGAAAGTACTATCGTGTAAGCCAGGCTTTAGAAGTAATGCTTGAA
CTAGAATATTCGAATTCTTGAGCATTTTGTTGTTTACTTTTGCCTGAATT
TGTTTAGGGTTTTCGTATAACTTTTGTTCCAATTTAATTAAATGACTTTA
ATAATAACGCTTTTTCTTTAAATCGCATTCCAACTATATTGTAAAAAACT
TTTTATCATACTTTTTTCATATGTTTGTAAGAGGGAAGTATTATTGACGG
ATTCGAGGTGACCGAGTGTATAACTCGAACCCGTAATTGGTATATTTTTC
AACTCGATTTATCGGCAACTCGGTCGCTTCAAATCTTTCTAGTTTATAGA
CTATACTACCTAGTTCCTTAAACTTTTTCAACAATTTCTAAAAAATTCGT
ATTATTTTCTTATACGACCAACTCTAACATAAAAATTTTAATTGTAAAAC
ATTTTCAAAAATTTTCCTACAAAAATTACATCAAGTTTTACGATAATTTA
TGTATATTTCTTCACAGAAGTTTATTTGAAAAATATATTTTGGCAAGTGT
CGATAAAAAAGGGGTGTGGTTGTTTGTTTTTTTCGAGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009655XLOC_009655Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017254-exon-sc0000261-1575043694:342043..342400TCONS_00017254-exon-sc0000261-1575043694:342043..342400Clytia hemisphaericaexon
TCONS_00017254-exon-sc0000261-1575043694:341221..341459TCONS_00017254-exon-sc0000261-1575043694:341221..341459Clytia hemisphaericaexon
TCONS_00017254-exon-sc0000261-1575043694:339636..340008TCONS_00017254-exon-sc0000261-1575043694:339636..340008Clytia hemisphaericaexon
TCONS_00017254-exon-sc0000261-1575043694:339047..339275TCONS_00017254-exon-sc0000261-1575043694:339047..339275Clytia hemisphaericaexon
TCONS_00017254-exon-sc0000261-1575043694:337212..338793TCONS_00017254-exon-sc0000261-1575043694:337212..338793Clytia hemisphaericaexon
TCONS_00017254-exon-sc0000261-1510915933:342043..342400TCONS_00017254-exon-sc0000261-1510915933:342043..342400Clytia hemisphaericaexon
TCONS_00017254-exon-sc0000261-1510915933:341221..341459TCONS_00017254-exon-sc0000261-1510915933:341221..341459Clytia hemisphaericaexon
TCONS_00017254-exon-sc0000261-1510915933:339636..340008TCONS_00017254-exon-sc0000261-1510915933:339636..340008Clytia hemisphaericaexon
TCONS_00017254-exon-sc0000261-1510915933:339047..339275TCONS_00017254-exon-sc0000261-1510915933:339047..339275Clytia hemisphaericaexon
TCONS_00017254-exon-sc0000261-1510915933:337212..338793TCONS_00017254-exon-sc0000261-1510915933:337212..338793Clytia hemisphaericaexon
TCONS_00017254-exon-sc0000261-1491911889:342043..342400TCONS_00017254-exon-sc0000261-1491911889:342043..342400Clytia hemisphaericaexon
TCONS_00017254-exon-sc0000261-1491911889:341221..341459TCONS_00017254-exon-sc0000261-1491911889:341221..341459Clytia hemisphaericaexon
TCONS_00017254-exon-sc0000261-1491911889:339636..340008TCONS_00017254-exon-sc0000261-1491911889:339636..340008Clytia hemisphaericaexon
TCONS_00017254-exon-sc0000261-1491911889:339047..339275TCONS_00017254-exon-sc0000261-1491911889:339047..339275Clytia hemisphaericaexon
TCONS_00017254-exon-sc0000261-1491911889:337212..338793TCONS_00017254-exon-sc0000261-1491911889:337212..338793Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000261supercontigsc0000261:337212..342400 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
17.1294	14.8889	6.26778	6.14788	204.126	153.927	76.8506	84.56	32.2519	37.7647	30.7996	29.6921	146.003	139.812	201.989	207.689	99.973	123.367	115.222	155.786	54.0937	52.8698	68.451	74.8408	90.5839	98.3793	97.6	88.7588	306.99	325.337
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017254 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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