TCONS_00017253 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017253
Unique NameTCONS_00017253
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2134

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017253 ID=TCONS_00017253|Name=TCONS_00017253|organism=Clytia hemisphaerica|type=transcript|length=2134bp
TTTCAGAgagcaaacaaacaaaataaaataataacaaaattaACAATact
ggtgacgtcatcaaaacaataaattcaagatggcgatgGTAGCAACGGAT
CTCAAGGGGATGCTTAGCATCTCCATAAAATCCCGACACGATTCACATTC
GGACCAATATAACCGTATCTTTATGGTGAAATTAATGTTGGTTTGTTGCG
TTGTCATGGGAATCTCGTGGTATTCCGATTCAATCTCGTGCATTATTCCA
GgtGCTCACGGAATTGACGGGGGTTTTGTCTCCTCAACATGTTGGATTCA
GGGGGTATACATCTATAAAGAATTGAGAGCACGTGTTGATGAAGTGGCTT
ATTTTGGTATACCCAAAGATATCGATCTTGATGGTATTCTTCATGATACA
CCAAACAAAGAGTTATGCCCACTGGAACCAAGATTGTCAAAGAAAGTTAA
GGAAGGGTGTACCCCAATGGAAAAGACTTATTTCCTCCAATACCAATACT
TTCCCTTCCTGATCGCTGCTTTGGCCATCATTTTCTATGCCCCATACCTC
TTGTTCCGTGCTGTCAACAACGATCTCATCTCATTGAAAGATAATGTGAA
AAGCGACGAAAAAGACGCTGAAAAAATCGCCAAACATTACTTCAGTCAAA
AGACTAACCCTAACAgAAACAATGCAGGTCGCATTCTTGGAAACATCTTG
GTCAAAGTTTTATATTTGGTTGCTAACGTGGTCACACTTACCGGATTAAA
TCGATTGTTGAATGGAGAATTCATCGGATACGGAAACAAATGGATCGAAT
GGACCGGCCTTCAAAACACCATCCAATATGATTATATGGGAATGAGAGAT
CACCCTAAACCAGGAAACATCCTTCTCCCACCATTCGGTTACTGCGAGGT
CCGCGCGTCCGCTAAAGACATCAAAGAATCGTATGCCAATCAGCATAAAT
TCGTTTGTGAATTATCTCAAAACATTTTGTACCAATACGCTTTGGTTGTC
TTGTGGTTCGCCCTTATCATTGGAATCGTTGTTTCCGTCATCGGACTTTT
GTTGTTGATCATTCACTACATTGTCGGTGTCTTTGGTATCAAAGCTGATG
GACCAGTTGCCAAGAGAATCTTCAAAACACTGTCGTTCCGTGAGTTGGAA
TACTTAGAGTTCATCCGAAAACGCGATATCGTCCTTTACGGAGAGATCTT
GGACCACCTGAAAAACGACCGCCTTCACGAAGTCGCCCCGCCCAGCAACC
GCGATGACGCCCCACTTTACCCGTCTTTACCAAACAAAGACAGGTACCCT
GATGAACAAAAACGACCTGATTATGACGGTGGATATTAAGTATGTTTCAA
AACCAGTATACCTCAAAAGTGGAAAGGATACTTCAAAACCATACCAAGGG
ATGTGTCAAAACCAGGGCATGTAGAATGCTTAGACGATTAGAAAATTAAG
ATTCGCCTAAATTCATAGAATTGAGTCTTATTCGAAATTTTCCTCAACGA
AACCTTTAGAGTGGGTAGATAAACCTCGTAGATGTGTTTTTGGTTAAGTA
TGCACCATCCGTTTTCTATTTTTGTAAATCTATCAGACAACCTTGAGAAC
CTTGAGGGTTTTCTCTTCGTGGCTCGATTTGTAGATATTCTATCAAGCTT
GAAAGGAAATCCCGCcttcgttttcatttttcattagaaTCCTTCTATAG
TAATTACGCCATTTTTCGCTAGTATTTTTTCGTAATTACATATTTTTCGA
TACTTCCACATTCTTGTAAAAcgtttttttaagcaatttcatttattttt
ttgttttcattttagaaaATTGTTCGCAAGCATTTTTctgttttatgttt
taaaaagtACCTTCAAGCtccattttagtttttatttctgacgttgattt
tgtcattattttggTGGTCAATGCTAGTTCTAGCTCAGTTCTGCTGAAAT
TTTCCTGAACTTTTTAATGGTAGAATTGTAGCATTAACCACAAGATTTTA
ATGGCACTTGGCTGGTAGCATccaattttacaaatttcgattttaagtca
ttttaatgtttttaaaacttttatgttttttgcatATTCTAGTTTTTATG
GGATAACATTTTTGATATGAAGTGAAATAAGGTC
Run BLAST on NCBI

protein sequence of TCONS_00017253-protein

>TCONS_00017253-protein ID=TCONS_00017253-protein|Name=TCONS_00017253-protein|organism=Clytia hemisphaerica|type=polypeptide|length=419bp
MAMVATDLKGMLSISIKSRHDSHSDQYNRIFMVKLMLVCCVVMGISWYSD
SISCIIPGAHGIDGGFVSSTCWIQGVYIYKELRARVDEVAYFGIPKDIDL
DGILHDTPNKELCPLEPRLSKKVKEGCTPMEKTYFLQYQYFPFLIAALAI
IFYAPYLLFRAVNNDLISLKDNVKSDEKDAEKIAKHYFSQKTNPNRNNAG
RILGNILVKVLYLVANVVTLTGLNRLLNGEFIGYGNKWIEWTGLQNTIQY
DYMGMRDHPKPGNILLPPFGYCEVRASAKDIKESYANQHKFVCELSQNIL
YQYALVVLWFALIIGIVVSVIGLLLLIIHYIVGVFGIKADGPVAKRIFKT
LSFRELEYLEFIRKRDIVLYGEILDHLKNDRLHEVAPPSNRDDAPLYPSL
PNKDRYPDEQKRPDYDGGY
Run BLAST on NCBI

transcript from alignment at sc0000261:332439..336603-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017253 ID=TCONS_00017253|Name=TCONS_00017253|organism=Clytia hemisphaerica|type=transcript|length=4165bp|location=Sequence derived from alignment at sc0000261:332439..336603- (Clytia hemisphaerica)
TTTCAGAGAGCAAACAAACAAAATAAAATAATAACAAAATTAACAATACT
GGTGACGTCATCAAAACAATAAATTCAAGATGGCGATGGTAGCAACGGAT
CTCAAGGGGATGCTTAGCATCTCCATAAAATCCCGACACGATTCACATTC
GGACCAATATAACCGTATCTTTATGGTGAAATTAATGTTGGTTTGTTGCG
TTGTCATGGGAATCTCGTGGTATTCCGATTCAATCTCGTGCATTATTCCA
GGTATGAATCCCGATTTTTTATCCAAGTTTCCCCGAATTTTGAAAGTGAA
TTCCTGGATAGTAATTTATGGCTACCATATTGTGTCCTGATCAAATTTCG
TCCAATTTTGAAACCTTTAATCCCAGTTTCAGCCCTGTTTCCTTTATTGG
CTCGCAGAACAAATTTTCGCAGTATAATAATATCAATAGAAAGTAGTGTT
TTAGATTTTTCTCGAATTATTCAGTTTCGATCATTAATCTTTAGTTTCCC
GATTTACTCAAGTCGAGTTTCATCATTAAAATAGCTTTATAAATAATATT
TTTCAGGTGCTCACGGAATTGACGGGGGTTTTGTCTCCTCAACATGTTGG
ATTCAGGGGGTATACATCTATAAAGAATTGAGAGCACGTGTTGATGAAGT
GGCTTATTTTGGTATACCCAAAGATATCGATCTTGATGGTATTCTTCATG
ATACACCAAACAAAGAGTTATGCCCACTGGAACCAAGATTGTCAAAGAAA
GTTAAGGAAGGGTGTACCCCAATGGAAAAGACTTATTTCCTCCAAGTAAG
CCTCGTCACCAGTCCTCTTTCCGTCTTTTCTTGATGAACAGACTACACTT
GAAATTTTATTACGATTGAACCATCATAACTCTGATGTCTCCCTAACTCG
AGCAAGTTTGCTTGTTCTTTCAGTTTACAATGCCTTATAAACCTTACTCC
ATAACTCGAACAAATTTTTGCTCCCAGTGTGACTCCATTGCAATGTCTTC
TGACATTATATCAGGGACCCAATAGCTGATTGGTTGTAAGTGACGTAAAG
TTAGTCAAAATGTCATTTTCAACCAATCAGCTGTTGGGTCCGTTGAAGAC
ATTGCAATGATGTACATCATGAATATCCAAAACATTATGTAATCCTCTAC
TATCCTTTCTTTTCAGTACCAATACTTTCCCTTCCTGATCGCTGCTTTGG
CCATCATTTTCTATGCCCCATACCTCTTGTTCCGTGCTGTCAACAACGAT
CTCATCTCATTGAAAGATAATGTGAAAAGCGACGAAAAAGACGCTGAAAA
AATCGCCAAACATTACTTCAGTCAAAAGACTAACCCTAACAGGTATATAA
AAATGTTTTACCGGACGTAATTCTCAATTCTATAGGAGTAGCTTCCTCCC
CTACTTTCGGGCACGTAGCTAAAGAATGGGTTTCCCTTGACTGCGGTTGC
AAACTCACTCATTTACTTAATTCTAAATTTCTCACTTGGCAATCGCTGGA
GGATAGATAACGACTTTTTTTTACTTGATAGGATTTCAAGGAGATTCAAA
GTAAAGCTTCTCCTTGGTTTGTTTCTTGGAGTCGGTTTGAGTATTATAGA
TATTCCTATATTCGAAGTTCGAAATAGCGAAAGTCCACTGTAATTAAGAC
ATGTATTTGCACTTATTTGACCAGCTGTTATTTTCAATCTCCAACAGAAA
CAATGCAGGTCGCATTCTTGGAAACATCTTGGTCAAAGTTTTATATTTGG
TTGCTAACGTGGTCACACTTACCGGATTAAATCGATTGTTGAATGGAGAA
TTCATCGGATACGGAAACAAATGGATCGAATGGACCGGCCTTCAAAACAC
CATCCAATATGATTATATGGGAATGAGAGATCACCCTAAACCAGGTTTGT
TCACTTAATCCGAATCGGTTTCATATTTCCCGATAATTATTCCCCGGCTT
TCCTTACTCTTCAAAACATATGAGGTTAGAAATCACCCTAATAGTTTTGT
TTACATATCCCAAATCGGTTTCATGTTTCCCAAAAGTTCTCCCGTATATA
ACCAGGATATAACCCACCTTTGACTCGCCTCAGAGAATCCTTTTTCATAC
ACAACAACCTACATTAAAGATAAAGACACTTAACCACAAATCTCTCTTTT
CCAAATAGGAAACATCCTTCTCCCACCATTCGGTTACTGCGAGGTCCGCG
CGTCCGCTAAAGACATCAAAGAATCGTATGCCAATCAGCATAAATTCGTT
TGTGAATTATCTCAAAACATTTTGTACCAATACGCTTTGGTTGTCTTGTG
GTTCGCCCTTATCATTGGAATCGTTGTTTCCGTCATCGGACTTTTGTTGT
TGATCATTCACTACATTGTCGGTGTCTTTGGTATCAAGTAAGTTTTTTTT
CGGACAGAAGAACAAATTTTCGTACACTCTTGTCTATTCAAATTCATAGA
TGAAATTATTTGACTTTAGTTTGATAATCTTAAGTAAGTTGATGAATTTT
TTTTTCAGACAGAGTCAACTTAATTTCATAATTTCGAGCACGATTAACTT
ACTTCGTTACCTATTGATGAGGCGCTAACATAATTTTAAAACATAATTTT
CAACATGATTTGTCCTACTCTCAAAATTCACTAGAAATTGTACAAATTTT
ACTGTGTCGTATTATCGTGCAATATTTTGGTAATACAGTCGTATTATCGT
GCAATCTTTTGGTAATACGGTCGTATTATCGTGCAATATTTTGGTAATAC
GGTCGTATTATCGTGCAATCTTTTGGTAATACGGTCGTATTATCGTGTAA
TCTTTTGGTAATACGGTCGTATTATCGTGCAATCTTTTGGTAATACAGTC
GTATTATCGTGCAATCTTTTGGTAATACAGTCGTATTATCGTGCAATCTT
TTGGTAATACGGTTAGTGCTCTTTAATTCAATGTAACTAAGATCCGCTTC
ATCATTTAATAATATCGAGAGTTGCCATCAATAAGAAACAAGAAACTCGA
CGCTCTATCATACGATACGCTCCCTTCGATGAAAATTAATTCCCCTTGGA
AATCAAATTAGTAAGAGAGCGTCAACTGTATTCACGAGCCTTTTTATCAA
AAATTTCGTTTTTCATTATTTAGAGCTGATGGACCAGTTGCCAAGAGAAT
CTTCAAAACACTGTCGTTCCGTGAGTTGGAATACTTAGAGTTCATCCGAA
AACGCGATATCGTCCTTTACGGAGAGATCTTGGACCACCTGAAAAACGAC
CGCCTTCACGAAGTCGCCCCGCCCAGCAACCGCGATGACGCCCCACTTTA
CCCGTCTTTACCAAACAAAGACAGGTACCCTGATGAACAAAAACGACCTG
ATTATGACGGTGGATATTAAGTATGTTTCAAAACCAGTATACCTCAAAAG
TGGAAAGGATACTTCAAAACCATACCAAGGGATGTGTCAAAACCAGGGCA
TGTAGAATGCTTAGACGATTAGAAAATTAAGATTCGCCTAAATTCATAGA
ATTGAGTCTTATTCGAAATTTTCCTCAACGAAACCTTTAGAGTGGGTAGA
TAAACCTCGTAGATGTGTTTTTGGTTAAGTATGCACCATCCGTTTTCTAT
TTTTGTAAATCTATCAGACAACCTTGAGAACCTTGAGGGTTTTCTCTTCG
TGGCTCGATTTGTAGATATTCTATCAAGCTTGAAAGGAAATCCCGCCTTC
GTTTTCATTTTTCATTAGAATCCTTCTATAGTAATTACGCCATTTTTCGC
TAGTATTTTTTCGTAATTACATATTTTTCGATACTTCCACATTCTTGTAA
AACGTTTTTTTAAGCAATTTCATTTATTTTTTTGTTTTCATTTTAGAAAA
TTGTTCGCAAGCATTTTTCTGTTTTATGTTTTAAAAAGTACCTTCAAGCT
CCATTTTAGTTTTTATTTCTGACGTTGATTTTGTCATTATTTTGGTGGTC
AATGCTAGTTCTAGCTCAGTTCTGCTGAAATTTTCCTGAACTTTTTAATG
GTAGAATTGTAGCATTAACCACAAGATTTTAATGGCACTTGGCTGGTAGC
ATCCAATTTTACAAATTTCGATTTTAAGTCATTTTAATGTTTTTAAAACT
TTTATGTTTTTTGCATATTCTAGTTTTTATGGGATAACATTTTTGATATG
AAGTGAAATAAGGTC

Coding sequence (CDS) from alignment at sc0000261:332439..336603-

>TCONS_00017253 ID=TCONS_00017253|Name=TCONS_00017253|organism=Clytia hemisphaerica|type=CDS|length=7560bp|location=Sequence derived from alignment at sc0000261:332439..336603- (Clytia hemisphaerica)
AGCTGATGGACCAGTTGCCAAGAGAATCTTCAAAACACTGTCGTTCCGTG
AGTTGGAATACTTAGAGTTCATCCGAAAACGCGATATCGTCCTTTACGGA
GAGATCTTGGACCACCTGAAAAACGACCGCCTTCACGAAGTCGCCCCGCC
CAGCAACCGCGATGACGCCCCACTTTACCCGTCTTTACCAAACAAAGACA
GGTACCCTGATGAACAAAAACGACCTGATTATGACGGTGGATATTAAGAA
ACATCCTTCTCCCACCATTCGGTTACTGCGAGGTCCGCGCGTCCGCTAAA
GACATCAAAGAATCGTATGCCAATCAGCATAAATTCGTTTGTGAATTATC
TCAAAACATTTTGTACCAATACGCTTTGGTTGTCTTGTGGTTCGCCCTTA
TCATTGGAATCGTTGTTTCCGTCATCGGACTTTTGTTGTTGATCATTCAC
TACATTGTCGGTGTCTTTGGTATCAAAAACAATGCAGGTCGCATTCTTGG
AAACATCTTGGTCAAAGTTTTATATTTGGTTGCTAACGTGGTCACACTTA
CCGGATTAAATCGATTGTTGAATGGAGAATTCATCGGATACGGAAACAAA
TGGATCGAATGGACCGGCCTTCAAAACACCATCCAATATGATTATATGGG
AATGAGAGATCACCCTAAACCAGTACCAATACTTTCCCTTCCTGATCGCT
GCTTTGGCCATCATTTTCTATGCCCCATACCTCTTGTTCCGTGCTGTCAA
CAACGATCTCATCTCATTGAAAGATAATGTGAAAAGCGACGAAAAAGACG
CTGAAAAAATCGCCAAACATTACTTCAGTCAAAAGACTAACCCTAACAGG
TGCTCACGGAATTGACGGGGGTTTTGTCTCCTCAACATGTTGGATTCAGG
GGGTATACATCTATAAAGAATTGAGAGCACGTGTTGATGAAGTGGCTTAT
TTTGGTATACCCAAAGATATCGATCTTGATGGTATTCTTCATGATACACC
AAACAAAGAGTTATGCCCACTGGAACCAAGATTGTCAAAGAAAGTTAAGG
AAGGGTGTACCCCAATGGAAAAGACTTATTTCCTCCAAATGGCGATGGTA
GCAACGGATCTCAAGGGGATGCTTAGCATCTCCATAAAATCCCGACACGA
TTCACATTCGGACCAATATAACCGTATCTTTATGGTGAAATTAATGTTGG
TTTGTTGCGTTGTCATGGGAATCTCGTGGTATTCCGATTCAATCTCGTGC
ATTATTCCAGAGCTGATGGACCAGTTGCCAAGAGAATCTTCAAAACACTG
TCGTTCCGTGAGTTGGAATACTTAGAGTTCATCCGAAAACGCGATATCGT
CCTTTACGGAGAGATCTTGGACCACCTGAAAAACGACCGCCTTCACGAAG
TCGCCCCGCCCAGCAACCGCGATGACGCCCCACTTTACCCGTCTTTACCA
AACAAAGACAGGTACCCTGATGAACAAAAACGACCTGATTATGACGGTGG
ATATTAAGAAACATCCTTCTCCCACCATTCGGTTACTGCGAGGTCCGCGC
GTCCGCTAAAGACATCAAAGAATCGTATGCCAATCAGCATAAATTCGTTT
GTGAATTATCTCAAAACATTTTGTACCAATACGCTTTGGTTGTCTTGTGG
TTCGCCCTTATCATTGGAATCGTTGTTTCCGTCATCGGACTTTTGTTGTT
GATCATTCACTACATTGTCGGTGTCTTTGGTATCAAAAACAATGCAGGTC
GCATTCTTGGAAACATCTTGGTCAAAGTTTTATATTTGGTTGCTAACGTG
GTCACACTTACCGGATTAAATCGATTGTTGAATGGAGAATTCATCGGATA
CGGAAACAAATGGATCGAATGGACCGGCCTTCAAAACACCATCCAATATG
ATTATATGGGAATGAGAGATCACCCTAAACCAGTACCAATACTTTCCCTT
CCTGATCGCTGCTTTGGCCATCATTTTCTATGCCCCATACCTCTTGTTCC
GTGCTGTCAACAACGATCTCATCTCATTGAAAGATAATGTGAAAAGCGAC
GAAAAAGACGCTGAAAAAATCGCCAAACATTACTTCAGTCAAAAGACTAA
CCCTAACAGGTGCTCACGGAATTGACGGGGGTTTTGTCTCCTCAACATGT
TGGATTCAGGGGGTATACATCTATAAAGAATTGAGAGCACGTGTTGATGA
AGTGGCTTATTTTGGTATACCCAAAGATATCGATCTTGATGGTATTCTTC
ATGATACACCAAACAAAGAGTTATGCCCACTGGAACCAAGATTGTCAAAG
AAAGTTAAGGAAGGGTGTACCCCAATGGAAAAGACTTATTTCCTCCAAAT
GGCGATGGTAGCAACGGATCTCAAGGGGATGCTTAGCATCTCCATAAAAT
CCCGACACGATTCACATTCGGACCAATATAACCGTATCTTTATGGTGAAA
TTAATGTTGGTTTGTTGCGTTGTCATGGGAATCTCGTGGTATTCCGATTC
AATCTCGTGCATTATTCCAGAGCTGATGGACCAGTTGCCAAGAGAATCTT
CAAAACACTGTCGTTCCGTGAGTTGGAATACTTAGAGTTCATCCGAAAAC
GCGATATCGTCCTTTACGGAGAGATCTTGGACCACCTGAAAAACGACCGC
CTTCACGAAGTCGCCCCGCCCAGCAACCGCGATGACGCCCCACTTTACCC
GTCTTTACCAAACAAAGACAGGTACCCTGATGAACAAAAACGACCTGATT
ATGACGGTGGATATTAAGAAACATCCTTCTCCCACCATTCGGTTACTGCG
AGGTCCGCGCGTCCGCTAAAGACATCAAAGAATCGTATGCCAATCAGCAT
AAATTCGTTTGTGAATTATCTCAAAACATTTTGTACCAATACGCTTTGGT
TGTCTTGTGGTTCGCCCTTATCATTGGAATCGTTGTTTCCGTCATCGGAC
TTTTGTTGTTGATCATTCACTACATTGTCGGTGTCTTTGGTATCAAAAAC
AATGCAGGTCGCATTCTTGGAAACATCTTGGTCAAAGTTTTATATTTGGT
TGCTAACGTGGTCACACTTACCGGATTAAATCGATTGTTGAATGGAGAAT
TCATCGGATACGGAAACAAATGGATCGAATGGACCGGCCTTCAAAACACC
ATCCAATATGATTATATGGGAATGAGAGATCACCCTAAACCAGTACCAAT
ACTTTCCCTTCCTGATCGCTGCTTTGGCCATCATTTTCTATGCCCCATAC
CTCTTGTTCCGTGCTGTCAACAACGATCTCATCTCATTGAAAGATAATGT
GAAAAGCGACGAAAAAGACGCTGAAAAAATCGCCAAACATTACTTCAGTC
AAAAGACTAACCCTAACAGGTGCTCACGGAATTGACGGGGGTTTTGTCTC
CTCAACATGTTGGATTCAGGGGGTATACATCTATAAAGAATTGAGAGCAC
GTGTTGATGAAGTGGCTTATTTTGGTATACCCAAAGATATCGATCTTGAT
GGTATTCTTCATGATACACCAAACAAAGAGTTATGCCCACTGGAACCAAG
ATTGTCAAAGAAAGTTAAGGAAGGGTGTACCCCAATGGAAAAGACTTATT
TCCTCCAAATGGCGATGGTAGCAACGGATCTCAAGGGGATGCTTAGCATC
TCCATAAAATCCCGACACGATTCACATTCGGACCAATATAACCGTATCTT
TATGGTGAAATTAATGTTGGTTTGTTGCGTTGTCATGGGAATCTCGTGGT
ATTCCGATTCAATCTCGTGCATTATTCCAGAGCTGATGGACCAGTTGCCA
AGAGAATCTTCAAAACACTGTCGTTCCGTGAGTTGGAATACTTAGAGTTC
ATCCGAAAACGCGATATCGTCCTTTACGGAGAGATCTTGGACCACCTGAA
AAACGACCGCCTTCACGAAGTCGCCCCGCCCAGCAACCGCGATGACGCCC
CACTTTACCCGTCTTTACCAAACAAAGACAGGTACCCTGATGAACAAAAA
CGACCTGATTATGACGGTGGATATTAAGAAACATCCTTCTCCCACCATTC
GGTTACTGCGAGGTCCGCGCGTCCGCTAAAGACATCAAAGAATCGTATGC
CAATCAGCATAAATTCGTTTGTGAATTATCTCAAAACATTTTGTACCAAT
ACGCTTTGGTTGTCTTGTGGTTCGCCCTTATCATTGGAATCGTTGTTTCC
GTCATCGGACTTTTGTTGTTGATCATTCACTACATTGTCGGTGTCTTTGG
TATCAAAAACAATGCAGGTCGCATTCTTGGAAACATCTTGGTCAAAGTTT
TATATTTGGTTGCTAACGTGGTCACACTTACCGGATTAAATCGATTGTTG
AATGGAGAATTCATCGGATACGGAAACAAATGGATCGAATGGACCGGCCT
TCAAAACACCATCCAATATGATTATATGGGAATGAGAGATCACCCTAAAC
CAGTACCAATACTTTCCCTTCCTGATCGCTGCTTTGGCCATCATTTTCTA
TGCCCCATACCTCTTGTTCCGTGCTGTCAACAACGATCTCATCTCATTGA
AAGATAATGTGAAAAGCGACGAAAAAGACGCTGAAAAAATCGCCAAACAT
TACTTCAGTCAAAAGACTAACCCTAACAGGTGCTCACGGAATTGACGGGG
GTTTTGTCTCCTCAACATGTTGGATTCAGGGGGTATACATCTATAAAGAA
TTGAGAGCACGTGTTGATGAAGTGGCTTATTTTGGTATACCCAAAGATAT
CGATCTTGATGGTATTCTTCATGATACACCAAACAAAGAGTTATGCCCAC
TGGAACCAAGATTGTCAAAGAAAGTTAAGGAAGGGTGTACCCCAATGGAA
AAGACTTATTTCCTCCAAATGGCGATGGTAGCAACGGATCTCAAGGGGAT
GCTTAGCATCTCCATAAAATCCCGACACGATTCACATTCGGACCAATATA
ACCGTATCTTTATGGTGAAATTAATGTTGGTTTGTTGCGTTGTCATGGGA
ATCTCGTGGTATTCCGATTCAATCTCGTGCATTATTCCAGAGCTGATGGA
CCAGTTGCCAAGAGAATCTTCAAAACACTGTCGTTCCGTGAGTTGGAATA
CTTAGAGTTCATCCGAAAACGCGATATCGTCCTTTACGGAGAGATCTTGG
ACCACCTGAAAAACGACCGCCTTCACGAAGTCGCCCCGCCCAGCAACCGC
GATGACGCCCCACTTTACCCGTCTTTACCAAACAAAGACAGGTACCCTGA
TGAACAAAAACGACCTGATTATGACGGTGGATATTAAGAAACATCCTTCT
CCCACCATTCGGTTACTGCGAGGTCCGCGCGTCCGCTAAAGACATCAAAG
AATCGTATGCCAATCAGCATAAATTCGTTTGTGAATTATCTCAAAACATT
TTGTACCAATACGCTTTGGTTGTCTTGTGGTTCGCCCTTATCATTGGAAT
CGTTGTTTCCGTCATCGGACTTTTGTTGTTGATCATTCACTACATTGTCG
GTGTCTTTGGTATCAAAAACAATGCAGGTCGCATTCTTGGAAACATCTTG
GTCAAAGTTTTATATTTGGTTGCTAACGTGGTCACACTTACCGGATTAAA
TCGATTGTTGAATGGAGAATTCATCGGATACGGAAACAAATGGATCGAAT
GGACCGGCCTTCAAAACACCATCCAATATGATTATATGGGAATGAGAGAT
CACCCTAAACCAGTACCAATACTTTCCCTTCCTGATCGCTGCTTTGGCCA
TCATTTTCTATGCCCCATACCTCTTGTTCCGTGCTGTCAACAACGATCTC
ATCTCATTGAAAGATAATGTGAAAAGCGACGAAAAAGACGCTGAAAAAAT
CGCCAAACATTACTTCAGTCAAAAGACTAACCCTAACAGGTGCTCACGGA
ATTGACGGGGGTTTTGTCTCCTCAACATGTTGGATTCAGGGGGTATACAT
CTATAAAGAATTGAGAGCACGTGTTGATGAAGTGGCTTATTTTGGTATAC
CCAAAGATATCGATCTTGATGGTATTCTTCATGATACACCAAACAAAGAG
TTATGCCCACTGGAACCAAGATTGTCAAAGAAAGTTAAGGAAGGGTGTAC
CCCAATGGAAAAGACTTATTTCCTCCAAATGGCGATGGTAGCAACGGATC
TCAAGGGGATGCTTAGCATCTCCATAAAATCCCGACACGATTCACATTCG
GACCAATATAACCGTATCTTTATGGTGAAATTAATGTTGGTTTGTTGCGT
TGTCATGGGAATCTCGTGGTATTCCGATTCAATCTCGTGCATTATTCCAG
AGCTGATGGACCAGTTGCCAAGAGAATCTTCAAAACACTGTCGTTCCGTG
AGTTGGAATACTTAGAGTTCATCCGAAAACGCGATATCGTCCTTTACGGA
GAGATCTTGGACCACCTGAAAAACGACCGCCTTCACGAAGTCGCCCCGCC
CAGCAACCGCGATGACGCCCCACTTTACCCGTCTTTACCAAACAAAGACA
GGTACCCTGATGAACAAAAACGACCTGATTATGACGGTGGATATTAAGAA
ACATCCTTCTCCCACCATTCGGTTACTGCGAGGTCCGCGCGTCCGCTAAA
GACATCAAAGAATCGTATGCCAATCAGCATAAATTCGTTTGTGAATTATC
TCAAAACATTTTGTACCAATACGCTTTGGTTGTCTTGTGGTTCGCCCTTA
TCATTGGAATCGTTGTTTCCGTCATCGGACTTTTGTTGTTGATCATTCAC
TACATTGTCGGTGTCTTTGGTATCAAAAACAATGCAGGTCGCATTCTTGG
AAACATCTTGGTCAAAGTTTTATATTTGGTTGCTAACGTGGTCACACTTA
CCGGATTAAATCGATTGTTGAATGGAGAATTCATCGGATACGGAAACAAA
TGGATCGAATGGACCGGCCTTCAAAACACCATCCAATATGATTATATGGG
AATGAGAGATCACCCTAAACCAGTACCAATACTTTCCCTTCCTGATCGCT
GCTTTGGCCATCATTTTCTATGCCCCATACCTCTTGTTCCGTGCTGTCAA
CAACGATCTCATCTCATTGAAAGATAATGTGAAAAGCGACGAAAAAGACG
CTGAAAAAATCGCCAAACATTACTTCAGTCAAAAGACTAACCCTAACAGG
TGCTCACGGAATTGACGGGGGTTTTGTCTCCTCAACATGTTGGATTCAGG
GGGTATACATCTATAAAGAATTGAGAGCACGTGTTGATGAAGTGGCTTAT
TTTGGTATACCCAAAGATATCGATCTTGATGGTATTCTTCATGATACACC
AAACAAAGAGTTATGCCCACTGGAACCAAGATTGTCAAAGAAAGTTAAGG
AAGGGTGTACCCCAATGGAAAAGACTTATTTCCTCCAAATGGCGATGGTA
GCAACGGATCTCAAGGGGATGCTTAGCATCTCCATAAAATCCCGACACGA
TTCACATTCGGACCAATATAACCGTATCTTTATGGTGAAATTAATGTTGG
TTTGTTGCGTTGTCATGGGAATCTCGTGGTATTCCGATTCAATCTCGTGC
ATTATTCCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009654XLOC_009654Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017253-proteinTCONS_00017253-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017253-exon-sc0000261-1575043694:336353..336603TCONS_00017253-exon-sc0000261-1575043694:336353..336603Clytia hemisphaericaexon
TCONS_00017253-exon-sc0000261-1575043694:335809..336047TCONS_00017253-exon-sc0000261-1575043694:335809..336047Clytia hemisphaericaexon
TCONS_00017253-exon-sc0000261-1575043694:335262..335437TCONS_00017253-exon-sc0000261-1575043694:335262..335437Clytia hemisphaericaexon
TCONS_00017253-exon-sc0000261-1575043694:334710..334906TCONS_00017253-exon-sc0000261-1575043694:334710..334906Clytia hemisphaericaexon
TCONS_00017253-exon-sc0000261-1575043694:334217..334445TCONS_00017253-exon-sc0000261-1575043694:334217..334445Clytia hemisphaericaexon
TCONS_00017253-exon-sc0000261-1575043694:332439..333480TCONS_00017253-exon-sc0000261-1575043694:332439..333480Clytia hemisphaericaexon
TCONS_00017253-exon-sc0000261-1510915933:336353..336603TCONS_00017253-exon-sc0000261-1510915933:336353..336603Clytia hemisphaericaexon
TCONS_00017253-exon-sc0000261-1510915933:335809..336047TCONS_00017253-exon-sc0000261-1510915933:335809..336047Clytia hemisphaericaexon
TCONS_00017253-exon-sc0000261-1510915933:335262..335437TCONS_00017253-exon-sc0000261-1510915933:335262..335437Clytia hemisphaericaexon
TCONS_00017253-exon-sc0000261-1510915933:334710..334906TCONS_00017253-exon-sc0000261-1510915933:334710..334906Clytia hemisphaericaexon
TCONS_00017253-exon-sc0000261-1510915933:334217..334445TCONS_00017253-exon-sc0000261-1510915933:334217..334445Clytia hemisphaericaexon
TCONS_00017253-exon-sc0000261-1510915933:332439..333480TCONS_00017253-exon-sc0000261-1510915933:332439..333480Clytia hemisphaericaexon
TCONS_00017253-exon-sc0000261-1491911889:336353..336603TCONS_00017253-exon-sc0000261-1491911889:336353..336603Clytia hemisphaericaexon
TCONS_00017253-exon-sc0000261-1491911889:335809..336047TCONS_00017253-exon-sc0000261-1491911889:335809..336047Clytia hemisphaericaexon
TCONS_00017253-exon-sc0000261-1491911889:335262..335437TCONS_00017253-exon-sc0000261-1491911889:335262..335437Clytia hemisphaericaexon
TCONS_00017253-exon-sc0000261-1491911889:334710..334906TCONS_00017253-exon-sc0000261-1491911889:334710..334906Clytia hemisphaericaexon
TCONS_00017253-exon-sc0000261-1491911889:334217..334445TCONS_00017253-exon-sc0000261-1491911889:334217..334445Clytia hemisphaericaexon
TCONS_00017253-exon-sc0000261-1491911889:332439..333480TCONS_00017253-exon-sc0000261-1491911889:332439..333480Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000261supercontigsc0000261:332439..336603 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.34061	2.1926	3.88133	5.1447	273.815	216.765	171.905	178.216	115.386	122.214	157.181	117.698	419.258	429.828	587.546	618.798	394.289	435.208	312.21	336.013	230.901	248.883	214.146	278.587	348.22	350.866	946.557	834.751	465.678	462.697
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000990Innexin
Vocabulary: Cellular Component
TermDefinition
GO:0005921gap junction
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005921 gap junction
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017253 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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