TCONS_00017245 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017245
Unique NameTCONS_00017245
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length523

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017245 ID=TCONS_00017245|Name=TCONS_00017245|organism=Clytia hemisphaerica|type=transcript|length=523bp
CTTTTCGTAGGCAAAATTTCAGTCGACAAGAAGATCATCATGCTGTTTCC
ATAAAATTCAATATCTGATAACTGGAATATAATTATTGGAATGTGTTTTA
TTTTTAGCAATATATTGAAGATGCTCTCCTAAGATTCTGAAGTATTTGCA
AGGACAAGTATCAAAGGCATTAGCCTTTTGaagtcaaagaaaaaacattt
gaaattttttctgacaaaaaaaaacttgcaaAATGTCACCAAAGAATGGA
ATCTACATAGTTCAAGGTGAACTAAATCACATTGTTGCTGCACTTAGGAG
GAATACTAGATGGACTAGCGGACATTTTAATCAGGAGGAAGATGAACCTT
TGTTGCAAAGCTTCAACCAACTTAAAGATACTCTTCAAAATACATCAGGT
AATACTTTTaacgtagtggtctaaagaaacgactattcttcaaatttctt
attttaattctctttctattaaaatgaaggtcaatcaaacaagtaactaG
CATATATTACCTCCGCTCTCTGT
Run BLAST on NCBI

transcript from alignment at sc0000261:386191..390613+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017245 ID=TCONS_00017245|Name=TCONS_00017245|organism=Clytia hemisphaerica|type=transcript|length=4423bp|location=Sequence derived from alignment at sc0000261:386191..390613+ (Clytia hemisphaerica)
CTTTTCGTAGGCAAAATTTCAGTCGACAAGAAGATCATCATGCTGTTTCC
ATAAAATTCAATATCTGATAACTGGAATATAATTATTGGAATGTGTTTTA
TTTTTAGCAATATATTGAAGATGCTCTCCTAAGATTCTGAAGTATTTGCA
AGGACAAGTATCAAAGGCATTAGCCTTTTGaagtcaaagaaaaaacattt
gaaattttttctgacaaaaaaaaacttgcaaAATGTCACCAAAGAATGGA
ATCTACATAGTTCAAGGTGAACTAAATCACATTGTTGCTGCACTTAGGAG
GAATACTAGATGGACTAGCGGACATTTTAATCAGGTGAGAAATTTTCTGC
TCTGGCTTTCTCTGGAAAcacaaaacttttcatttcaacGATGACACCCT
gcttagcaactccagaagatttttcaagttttaatttttttttcaaaatc
tatcctatcttgtagagctttgaaaaagaaagaaaatgaggggtcatagg
cctccagaggattagtgattgtaaagatattcaaattttagtgtcaaaaa
tttgactaaaaatgtcaaaaaaaaggttaggaaaataacttggaaaaatt
cgaaaaatgtgtcaaaaaagaaaaaaaagaaattttccagtcatgcttct
taaattttgcatatctctttttctagtgtagctagagacctcaNNNNNNN
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GAAATGTTGGCTCATTTGTGTTGTTGTAAAGTTTATATTATCTAAAGTTT
GAGTCTAAGTTTAAGCTGCCAGGAGttattacaaaaatattatGTAAATT
CTTCAAATACATTATACACCTGATCTGCTGATTGTAGACCAATTTCTATG
AACTTCAATTTTGATCTTTATCACTTAGGCATATACCTGATCAAGGGGAC
CTCTGGGAAGCAATATGAAGGCCTTTGAAGGAAGTACTTTGTCcattaag
attttttttgtaaaaattaagggaagaaaatgaacattttgggaccctta
tgggactttttttattttaaagatgaaaaaaaagatttttttgggaTTTC
TCTTTAAATTTCACGAAACTTCTGAATTTTGAACTACTAACCACAAAATT
AAATTGCGCAAACATTTCTTCCCAAGGGTAATGTGTCATTGTTGGAGTTT
TGAATAACTAGGAGACACCACATTAGctcaagattttttgtttgaaatga
atGTTATTTTATGACATCAATTTAGgcttacttatttttataagaagaga
GCATTTTGGAACTAAGACTTGAGCTTACTTTTAAAATATCATCCACTCTG
AAAAAACAAGGTATTTAAAGCTTTATTTACTAGATGAAGACCAGAAAGAT
AATGGTCTTCTACACATAAAAGATCCTTGTATGTCCTTTATCAAAGCACA
TATCCCAGGAATATCAACTGCTTTGCAGACTATCCAATATAATTTCCTAT
CAAGTCATTGGCCAATTTTCTTCAAGAATCTCATCTCAAAAGAATCTTAA
ATAAGTTCTTTGCTAACCTTCAAAATAAAGTTAGATAGAATCCTTGCTTT
TGTTCCAAATGAACCTTCTGTTATTCTGGGTACGTCTAACTCaataaaac
atcaaatcaacaatAGACAAGCCGCCATTAGATTGTTCACATGGATATGA
TGGAATACAATTAAAAGCATTTTCAAGTATTCCAAAAACAGGTTTATCCT
TATCTCAACCTGCCATTTTATGATGCCAAAATCTTTATCTTTTGAATATT
TGAGCTTGATTGGAATTTTCTTTCATCTGAATAGGAGGAAGATGAACCTT
TGTTGCAAAGCTTCAACCAACTTAAAGATACTCTTCAAAATACATCAGGT
AATACTTTTaacgtagtggtctaaagaaacgactattcttcaaatttctt
attttaattctctttctattaaaatgaaggtcaatcaaacaagtaactaG
CATATATTACCTCCGCTCTCTGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009647XLOC_009647Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017245-exon-sc0000261-1491911889:386191..386524TCONS_00017245-exon-sc0000261-1491911889:386191..386524Clytia hemisphaericaexon
TCONS_00017245-exon-sc0000261-1510915933:386191..386524TCONS_00017245-exon-sc0000261-1510915933:386191..386524Clytia hemisphaericaexon
TCONS_00017245-exon-sc0000261-1575043694:386191..386524TCONS_00017245-exon-sc0000261-1575043694:386191..386524Clytia hemisphaericaexon
TCONS_00017245-exon-sc0000261-1491911889:390425..390613TCONS_00017245-exon-sc0000261-1491911889:390425..390613Clytia hemisphaericaexon
TCONS_00017245-exon-sc0000261-1510915933:390425..390613TCONS_00017245-exon-sc0000261-1510915933:390425..390613Clytia hemisphaericaexon
TCONS_00017245-exon-sc0000261-1575043694:390425..390613TCONS_00017245-exon-sc0000261-1575043694:390425..390613Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000261supercontigsc0000261:386191..390613 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.59788	3.8205	5.13439	3.93898	7.10331	4.14545	6.10049	7.87809	3.53353	7.47078	10.4222	8.90256	5.62127	6.56943	4.8625	6.60544	5.64978	6.12453	3.90448	7.65366	6.48282	6.69523	5.52274	7.8816	2.55817	3.17205	6.41669	5.71596	6.76706	6.33247
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017245 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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