TCONS_00017244 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017244
Unique NameTCONS_00017244
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length918

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017244 ID=TCONS_00017244|Name=TCONS_00017244|organism=Clytia hemisphaerica|type=transcript|length=918bp
NNTTTAAAACTTAAGAAAAATACATACTGTGACAGGACTTTCAACATTCT
TTTACTCTACCGCAGTCATCAAGAAACACTGACCTCTTTTTTTTATAGTC
TACACACAGTGCTATCTGAGTTACCAGATATTGATATTATTTTTGGCGAT
TTTAATATTGACCTGCtgaaagaaagtgaagaaaaacgcAATCTCTTATA
CTGCCTTCAAGATTTCAATCCACTCGTAGATTTTCCAACACATGTAGATG
GAGGTGCCATTGATCATATTTTCGTCAATAGCTCCCTTGATGATGCCTTG
GTGGATGGTCTTAAATTTTGCACATGCCTTTCAGATCacgatgttttgaa
aattgaaattttctgatagttttatgttttattaaTAGAAAACAGGGATT
CAGATTTCCAATTTATGATACAATAGGGATGGGTGGGGGATGGGAGTCAA
GGGACTCCTTTTAGCGcagtaggcttttaaatggCACAAGTTTGGGGATC
TTCAAGAGTTTCAAGCTAGGACTTAAAAATACAGTCACTAACAACTTAGA
TATTTCAGTAGCTGCAAACTTATGCCATATAGAATCCTATCTAAACTTTC
ATCGTTAGGCACAAACCTCAAAGATTAAGGCAGTTTATTTTTGTATAATG
AATGAAAGTGACATATAATGGTCATTTTGATCATTCATATAAAAATAAAG
AGTTTTTTTATTACCATACAGTGAAATCTATGTTTAAATATTCTCAACTA
AAATCTTGTCGCTTGTCTTATTTAGCTGCttaaattttgagatattttcc
aaaaatataagggGCTTTGAGATAGGTCATACATGAATTAAAAAGATATG
TTTTATTTGAATGAATTTATAAGATGCTAAAATTAGTATttagttaatat
ttttgtagaGTTTGTCTT
Run BLAST on NCBI

protein sequence of TCONS_00017244-protein

>TCONS_00017244-protein ID=TCONS_00017244-protein|Name=TCONS_00017244-protein|organism=Clytia hemisphaerica|type=polypeptide|length=121bp
XLKLKKNTYCDRTFNILLLYRSHQETLTSFFYSLHTVLSELPDIDIIFGD
FNIDLLKESEEKRNLLYCLQDFNPLVDFPTHVDGGAIDHIFVNSSLDDAL
VDGLKFCTCLSDHDVLKIEIF
Run BLAST on NCBI

transcript from alignment at sc0000261:328929..329992+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017244 ID=TCONS_00017244|Name=TCONS_00017244|organism=Clytia hemisphaerica|type=transcript|length=1064bp|location=Sequence derived from alignment at sc0000261:328929..329992+ (Clytia hemisphaerica)
NNTTTAAAACTTAAGAAAAATACATACTGTGACAGGACTTTCAACATTCT
TTTACTCTACCGCAGTCATCAAGAAACACTGACCTCTTTTTTTTATAGTC
TACACACAGTGCTATCTGAGTTACCAGATATTGATATTATTTTTGGCGAT
TTTAATATTGACCTGCtgaaagaaagtgaagaaaaacgcAATCTCTTATA
CTGCCTTCAAGATTTCAATCCACTCGTAGATTTTCCAACACATGTAGATG
GAGGTGCCATTGATCATATTTTCGTCAATAGCTCCCTTGATGATGCCTTG
GTGGATGGTCTTAAATTTTGCACATGCCTTTCAGATCacgatgttttgaa
aattgaaattttctgatagttttatgttttattaaTAGAAAACAGGGATT
CAGATTTCCAATTTATGATACAATAGGGATGGGTGGGGGATGGGAGTCAA
GGGACTCCTTTTAGCGcagtaggcttttaaatggCACAAGTTTGGGGATC
TTCAAGAGTTTCAAGCTAGGACTTAAAAATACAGTCACTAACAACTTAGA
TATTTCAGTAGCTGCAAACTTATGCCATATAGAATCCTATCTAAACTTTC
ATCGTTAGGCACAAACCTCAAAGATTAAGGCAGTTTATTTNGGGATCTTC
AAGAGTTTCAAGCTAGGACTTAAAAATACAGTCACTAACAACTTAGATAT
TTCAGTAGCTGCAAACTTATGCCATATAGAATCCTATCTAAACTTCATCG
TTAGGCACAAACCTCAAAGATAAAGGCAGTTTATTTTTGTATAATGAATG
AAAGTGACATATAATGGTCATTTTGATCATTCATATAAAAATAAAGAGTT
TTTTTATTACCATACAGTGAAATCTATGTTTAAATATTCTCAACTAAAAT
CTTGTCGCTTGTCTTATTTAGCTGCttaaattttgagatattttccaaaa
atataagggGCTTTGAGATAGGTCATACATGAATTAAAAAGATATGTTTT
ATTTGAATGAATTTATAAGATGCTAAAATTAGTATttagttaatattttt
gtagaGTTTGTCTT

Coding sequence (CDS) from alignment at sc0000261:328929..329992+

>TCONS_00017244 ID=TCONS_00017244|Name=TCONS_00017244|organism=Clytia hemisphaerica|type=CDS|length=366bp|location=Sequence derived from alignment at sc0000261:328929..329992+ (Clytia hemisphaerica)
NNTTTAAAACTTAAGAAAAATACATACTGTGACAGGACTTTCAACATTCT
TTTACTCTACCGCAGTCATCAAGAAACACTGACCTCTTTTTTTTATAGTC
TACACACAGTGCTATCTGAGTTACCAGATATTGATATTATTTTTGGCGAT
TTTAATATTGACCTGCtgaaagaaagtgaagaaaaacgcAATCTCTTATA
CTGCCTTCAAGATTTCAATCCACTCGTAGATTTTCCAACACATGTAGATG
GAGGTGCCATTGATCATATTTTCGTCAATAGCTCCCTTGATGATGCCTTG
GTGGATGGTCTTAAATTTTGCACATGCCTTTCAGATCacgatgttttgaa
aattgaaattttctga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009646XLOC_009646Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017244-proteinTCONS_00017244-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017244-exon-sc0000261-1491911889:328929..329557TCONS_00017244-exon-sc0000261-1491911889:328929..329557Clytia hemisphaericaexon
TCONS_00017244-exon-sc0000261-1510915933:328929..329557TCONS_00017244-exon-sc0000261-1510915933:328929..329557Clytia hemisphaericaexon
TCONS_00017244-exon-sc0000261-1575043694:328929..329557TCONS_00017244-exon-sc0000261-1575043694:328929..329557Clytia hemisphaericaexon
TCONS_00017244-exon-sc0000261-1491911889:329704..329992TCONS_00017244-exon-sc0000261-1491911889:329704..329992Clytia hemisphaericaexon
TCONS_00017244-exon-sc0000261-1510915933:329704..329992TCONS_00017244-exon-sc0000261-1510915933:329704..329992Clytia hemisphaericaexon
TCONS_00017244-exon-sc0000261-1575043694:329704..329992TCONS_00017244-exon-sc0000261-1575043694:329704..329992Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000261supercontigsc0000261:328929..329992 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.7902	3.61295	1.88856	1.08161	0.619909	0.549218	0.884304	0.393389	0.614524	0.699995	1.07926	1.90934	0.633733	0.839687	0.849965	0.221489	0.363039	0.104998	1.41582	0.620984	2.69947	4.36926	0.990044	1.36351	0.268624	0.149746	4.11744	4.4165	3.69359	3.65316
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005135Endo/exonuclease/phosphatase
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017244 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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