TCONS_00017239 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017239
Unique NameTCONS_00017239
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1027

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017239 ID=TCONS_00017239|Name=TCONS_00017239|organism=Clytia hemisphaerica|type=transcript|length=1027bp
TCTGGCATTGTGTTGTCTATTATCAGTTGCTTTTGCAAAACCATCACAAA
ATGGTTTATACAACCCTTTGTTTCAAGATATCATTGATGAAGTCAATAGT
AAACAAACAACATGGAAAGCCGGTCATAATTTTGATGCCAATGTTGACCA
TGCTTATTTGAAGCATTTATGTGGAACTTTTCTTGATGACCCCATCAGAG
AATCATTGCCAGAGAAACAAGATTTTGAAACAGTTGAGCTGCCAGATGAA
TTTGACTCTCGTACAAAATGGGGAGAGATTTGTCCAAGCACAAAAGAAGT
CCGTGACCAAGGAAACTGTGGCAGCTGCTGGGCATTTGGTGCTGTAGAAG
CTTTTACTGATCGTATCTGTATTGCATCGAACGGTGAAAAGAAACCTCAC
ATCTCTGCTGAAGATCTTCTTTCTTGTTGTGGTTTCTGGTGTGGAATGGG
TTGCAATGGAGGTTTCCTCGGAGGTGCCtggaactttttcaaaagaactg
GATGTGTTACCGGTGGACAATACAGTACCAAGGAAGGCTGTAGACCATAC
AGCATCCCAGCCTGTGAACACCACACTACTGGACACTTGAAACCATGCTC
TGGAGATTCTCATACaccaagctgtgagaaagaatGCAGACAAGGCTACA
ATGTCAGCTACACTGAAGACAGACATTACGTTAAAACCAAATACACTGTT
TCAAGCGACCAAACTAAAATCATGACAGACATTATGACCAATGGACCAGT
TGAAGGAGCTTTCACTGTCTATGCTGACTTCCCCAACTACAAATCAGGTG
TTTATCAACACACCACTGGATCACAACTTGGTGGTCATGCCATCAAAATC
CTTGGATGGGGTACTGAGAGCGGAACACCTTACTGGTTGGTTGCCAACTC
ATGGAATCCAGACTGGGGAAACAAAGGGTTTTTCAAGATTAAACGTGGAG
GAAATGAATGTGGCATTGAATCCTCAATCACTGCTGGAATCCCTGcataa
atttaaaatgaaaatgatttgtttttA
Run BLAST on NCBI

transcript from alignment at sc0000261:266683..274821+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017239 ID=TCONS_00017239|Name=TCONS_00017239|organism=Clytia hemisphaerica|type=transcript|length=8139bp|location=Sequence derived from alignment at sc0000261:266683..274821+ (Clytia hemisphaerica)
TCTGGCATTGTGTTGTCTATTATCAGTTGCTTTTGCAAAACCATCACAAA
ATGGTTTATACAACCCTTTGTTTCAAGATATCATTGATGAAGTCAATAGT
AAACAAACAACATGGAAAGCCGGTCATAATTTTGATGCCAATGTTGACCA
TGCTTATTTGAAGCATTTATGTGGAACTTTTCTTGATGACCCCATCAGAG
AATCATTGCCAGGTACACATGATTATCACTTGATCAatatttatcttttc
aatatttatctTATACAagttttttctttgcttttacTTTGGAAGTTAAA
TAATATACTTTGAGTGTTGGATGACACATGTGACATTGACATGAGTTCTA
TAAGACAAGAATTGATTGAGTTGATACGGTCTGAACACTCTTATATTTCA
TTAGTGTCGTTTTTATTCTTCACTTTGGGCATTTTAAGAGAAGTCTCTAG
GAACACTCTTCAGATAAAACATCTAAATATATTTTAGAGAATAGGGGATA
ATTATTCTTTCATGATATTTTATTTTAGAGAAACAAGATTTTGAAACAGT
TGAGCTGCCAGATGAATTTGACTCTCGTACAAAATGGGGAGAGATTTGTC
CAAGCACAAAAGAAGTCCGTGACCAAGGAAACTGTGGCAGCTGCTGGGTA
TGTTGTTCaaagaatttaaaacaaaatctaaAGAGCACTGAAGGGATTAT
GCCATTGGCCGAAAAAGGCTTTCACTATTTATGCTTCGTCATATGGGAAG
TTGTGTTTGAGGGCGTTGCAGTTGTGTCTATCGCTTTTGCCTAACCTCAC
AATTTATTCTAAAGATCTTAGGATTAGGAGTGtcttgtattttttataac
AGAGATGGCTAACTAATTCATTCCTTGAGCTGATTTTTTGTACCTagcaa
aattttatatattttttcacaaCAGGCATTTGGTGCTGTAGAAGCTTTTA
CTGATCGTATCTGTATTGCATCGAACGGTGAAAAGAAACCTCACATCTCT
GCTGAAGATCTTCTTTCTTGTTGTGGTTTCTGGTGTGGAATGGGTTGCAA
TGGAGGTTTCCTCGGAGGTGCCtggaactttttcaaaagaactgGATGTG
TTACCGGTGGACAATACAGTACCAAGGAAGGCTGTAGACCATACAGCATC
CCAGCCTGTGAACACCACACTACTGGACACTTGAAACCATGCTCTGGAGA
TTCTCATACaccaagctgtgagaaagaatGCAGACAAGGTTTGATCTATT
TTCATCATGTGGAAAGATTATTTATCTNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNATATTATTTAATAATCCAAATTATAT
TCTAGGCTACAATGTCAGCTACACTGAAGACAGACATTACGTTAAAACCA
AATACACTGTTTCAAGCGACCAAACTAAAATCATGACAGACATTATGACC
AATGGACCAGTTGAAGGAGCTTTCACTGTCTATGCTGACTTCCCCAACTA
CAAATCAGGTTTGAATTTCATGGAAGATTTGAAATATGTAGAGCTGGCTC
ACTTATACTGGATATACTCTTAAAGCGGTAAAAGATGTAAATTACCcata
ttttaaaagttctccTGTTTGATTTGGACAGTATTTCAAGTAGAGTTGTC
tgatgaaaaattaataaataaataatgtaTCTTTAACTTTGTGTGATCAG
TGTTAGTGATGCCaacaaaataacatttttcttttttgttataGGTGTTT
ATCAACACACCACTGGATCACAACTTGGTGGTCATGCCATCAAAATCCTT
GGATGGGGTACTGAGAGCGGAACACCTTACTGGTAAGGAAAATCTATATC
GAAATTGTGACCttaataataaatttttttttgctgcaAATAGTTTCAGA
CAGTTTCAATAAAACTTACATTAGAAAAGAACCCAACATTTATCTCCTAA
AATCCATGTAAGTATCCGGATTTCAATTTTGCAAGCAGGTATTTGCAACT
AACTCATTTTTTCCTGCCTTTCATCAGTATTACAAGACTTAGATAGCCGA
AAGTAATATTTTAATCTATCATTTATGTAGGTTGGTTGCCAACTCATGGA
ATCCAGACTGGGGAAACAAAGGTTCGTTTTCTGCtcagaaagaatttttt
tttctatctgaGGAAACTGGGTTCGAGATTACAGGTTAATGTCTGACAtt
cttaaagattttaaaaatcttgatgttatttccttgtaaattcattcCCA
GGCCCTTCGGAAGCCAACTGCACATTCaagggttgataggtgtattaCTT
TGATAGCGTATGAAAAGTGAGAAGGTTGGAAAtagtttatatattatatt
ggcTTCTTTTTTTAAAGGGTTTTTCAAGATTAAACGTGGAGGAAATGAAT
GTGGCATCGAATCCTCAATCACTGCTGGAATCCCTGcataaatttaaaat
gaaaatgatttgtttttAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNCACAACAGGCATTTGGTGCTGTAGAAGCTTTTACTGATCGTATCTG
TATTGCATCAAACGGTGAAAAGAAACCTCACATCTCTGCTGAAGATCTTC
TTTCTTGTTGTGGTTTCTGGTGTGGAATGGGTTGCAATGGAGGTTTCCTC
GGAGGTGCCtggaactttttcaaaagaactgGATGTGTTACCGGTGGACA
ATACAGTACCAAGGAAGGCTGTAGACCATACAGCATCCCAGCCTGTGAAC
ACCACACTACTGGACACTTGAAACCATGCTCTGGAGATTCTCATACacca
agctgtgagaaagaatGCAGACAAGGTTTGATCTATTTTCATCATGTGGA
AAGGTTATTTATCTAAATTTGGTGTAcaataaacatgaaatttctaAAAC
CTAATAACaaatatgaaaagaaaaagttattgAAGTTAATATCAATAATC
ATAATGATTTATATTATTTAATAATCCAAATTATGTTCTAGGCTACAATG
TCAGCTACACTGAAGACAGACATTACGTTAAAACCAAATACACTGTTTCA
AGCGACCAAACCAAAATCATGACAGACATTATGACCAATGGACCAGTTGA
AGGAGCTTTCACTGTCTATGCTGACTTCCCCAACTACAAATCAGGTTTGA
ATTTCATGGAAGATTTGAAATATGTAGAGCTGGCTCACTTATACTGGATA
TACTCTTAAAGCGGTAAAAGATGTAAATTACCcatattttaaaagttctc
cTGTTTGATTTGGACAGTATTTCAAGTAGAGTTGTCtgatgaaaaattaa
taaataaataatgtaTCTTTAACTTTGTGTGATCAGTGTTAGTGATGCCa
acaaaataacatttttcttttttgttataGGTGTTTATCAACACACCACT
GGATCACAACTTGGTGGTCATGCCATCAAAATCCTTGGATGGGGTACTGA
GAGCGGAACACCTTACTGGTAAGGAAAATCTATATCGAAATTGTGACCtt
aataataaatttttttttgctgcaAATAGTTTCAGACAGTTTCAATAAAA
CTTACATTAGAAAAGAACCCAACATTTATCTCCTAAAATCCATGTAAGTA
TCCGGATTTCAATTTTGCAAGCAGGTATTTGCAACTAACTCATTTTTTCC
TGCCTTTCATCAGTATTACAAGACTTAGATAGCCGAAAGTAATATTTTAA
TCTATCATTTATGTAGGTTGGTTGCCAACTCATGGAATCCAGACTGGGGA
AACAAAGGTTCGTTTTCTGCtcagaaagaatttttttttctatctgaGGA
AACTGGGTTCGAGATTACAGGTTAATGTCTGACAttcttaaagattttaa
aaatcttgatgttatttccttgtaaattcattcCCAGGCCCTTCGGAAGC
CAACTGCACATTCaagggttgataggtgtattaCTTTGATAGCGTATGAA
AAGTGAGAAGGTTGGAAAtagtttatatattatattggcTTCTTTTTTTA
AAGGGTTTTTCAAGATTAAACGTGGAGGAAATGAATGTGGCATCGAATCC
TCAATCACTGCTGGAATCCCTGcataaatttaaaatgaaaatgatttgtt
tttAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNATTACTTTGATAGCGTATGAAAAGTGAGAAGGTTGG
AAAtagtttatatattatattggcTTCTTTTTTTAAAGGGTTTTTCAAGA
TTAAACGTGGAGGAAATGAATGTGGCATTGAATCCTCAATCACTGCTGGA
ATCCCTGcataaatttaaaatgaaaatgatttgtttttA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009642XLOC_009642Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017239-exon-sc0000261-1491911889:266683..266894TCONS_00017239-exon-sc0000261-1491911889:266683..266894Clytia hemisphaericaexon
TCONS_00017239-exon-sc0000261-1510915933:266683..266894TCONS_00017239-exon-sc0000261-1510915933:266683..266894Clytia hemisphaericaexon
TCONS_00017239-exon-sc0000261-1575043694:266683..266894TCONS_00017239-exon-sc0000261-1575043694:266683..266894Clytia hemisphaericaexon
TCONS_00017239-exon-sc0000261-1491911889:267211..267329TCONS_00017239-exon-sc0000261-1491911889:267211..267329Clytia hemisphaericaexon
TCONS_00017239-exon-sc0000261-1510915933:267211..267329TCONS_00017239-exon-sc0000261-1510915933:267211..267329Clytia hemisphaericaexon
TCONS_00017239-exon-sc0000261-1575043694:267211..267329TCONS_00017239-exon-sc0000261-1575043694:267211..267329Clytia hemisphaericaexon
TCONS_00017239-exon-sc0000261-1491911889:267608..267920TCONS_00017239-exon-sc0000261-1491911889:267608..267920Clytia hemisphaericaexon
TCONS_00017239-exon-sc0000261-1510915933:267608..267920TCONS_00017239-exon-sc0000261-1510915933:267608..267920Clytia hemisphaericaexon
TCONS_00017239-exon-sc0000261-1575043694:267608..267920TCONS_00017239-exon-sc0000261-1575043694:267608..267920Clytia hemisphaericaexon
TCONS_00017239-exon-sc0000261-1491911889:269938..270090TCONS_00017239-exon-sc0000261-1491911889:269938..270090Clytia hemisphaericaexon
TCONS_00017239-exon-sc0000261-1510915933:269938..270090TCONS_00017239-exon-sc0000261-1510915933:269938..270090Clytia hemisphaericaexon
TCONS_00017239-exon-sc0000261-1575043694:269938..270090TCONS_00017239-exon-sc0000261-1575043694:269938..270090Clytia hemisphaericaexon
TCONS_00017239-exon-sc0000261-1491911889:270327..270414TCONS_00017239-exon-sc0000261-1491911889:270327..270414Clytia hemisphaericaexon
TCONS_00017239-exon-sc0000261-1510915933:270327..270414TCONS_00017239-exon-sc0000261-1510915933:270327..270414Clytia hemisphaericaexon
TCONS_00017239-exon-sc0000261-1575043694:270327..270414TCONS_00017239-exon-sc0000261-1575043694:270327..270414Clytia hemisphaericaexon
TCONS_00017239-exon-sc0000261-1491911889:272399..272439TCONS_00017239-exon-sc0000261-1491911889:272399..272439Clytia hemisphaericaexon
TCONS_00017239-exon-sc0000261-1510915933:272399..272439TCONS_00017239-exon-sc0000261-1510915933:272399..272439Clytia hemisphaericaexon
TCONS_00017239-exon-sc0000261-1575043694:272399..272439TCONS_00017239-exon-sc0000261-1575043694:272399..272439Clytia hemisphaericaexon
TCONS_00017239-exon-sc0000261-1491911889:274721..274821TCONS_00017239-exon-sc0000261-1491911889:274721..274821Clytia hemisphaericaexon
TCONS_00017239-exon-sc0000261-1510915933:274721..274821TCONS_00017239-exon-sc0000261-1510915933:274721..274821Clytia hemisphaericaexon
TCONS_00017239-exon-sc0000261-1575043694:274721..274821TCONS_00017239-exon-sc0000261-1575043694:274721..274821Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000261supercontigsc0000261:266683..274821 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0322434	1.00683	0	0	0	0	10.1099	5.32293	0	6.07281	1.83302	5.14182	1.6586e-05	0	3.62657	0	0	7.71736e-07	0	0.345325	0	2.29235	0.449095	2.52772	1.51027	0	1.40343	1.39365
Blast
[Close]
BLAST of TCONS_00017239 vs. Swiss-Prot (Human)
Match: CATB (Cathepsin B OS=Homo sapiens GN=CTSB PE=1 SV=3)

HSP 1 Score: 379.022 bits (972), Expect = 6.417e-130
Identity = 190/331 (57.40%), Postives = 239/331 (72.21%), Query Frame = 2 
Query:    5 ALCCLLSVAFAKPSQNGLYNPLFQDIIDEVNSKQTTWKAGHNFDANVDHAYLKHLCGTFLDDPIRESLPEKQDF-ETVELPDEFDSRTKWGEICPSTKEVRDQGNCGSCWAFGAVEAFTDRICIASNGEKKPHISAEDLLSCCGFWCXXXXXXXXXXXAWNFFKRTGCVTGGQYSTKEGCRPYSIPACEHHTTGHLKPCSGDSHTPSCEKECRQGYNVSYTEDRHYVKTKYTVSSDQTKIMTDIMTNGPVEGAFTVYADFPNYKSGVYQHTTGSQLGGHAIKILGWGTESGTPYWLVANSWNPDWGNKGFFKIKRGGNECGIESSITAGIP 994
            +LCCLL +A A+   +  ++PL  ++++ VN + TTW+AGHNF  NVD +YLK LCGTFL  P     P++  F E ++LP  FD+R +W + CP+ KE+RDQG+CGSCWAFGAVEA +DRICI +N      +SAEDLL+CCG  CG GCNGG+   AWNF+ R G V+GG Y +  GCRPYSIP CEHH  G   PC+G+  TP C K C  GY+ +Y +D+HY    Y+VS+ +  IM +I  NGPVEGAF+VY+DF  YKSGVYQH TG  +GGHAI+ILGWG E+GTPYWLVANSWN DWG+ GFFKI RG + CGIES + AGIP
Sbjct:    7 SLCCLLVLANARSRPS--FHPLSDELVNYVNKRNTTWQAGHNF-YNVDMSYLKRLCGTFLGGP---KPPQRVMFTEDLKLPASFDAREQWPQ-CPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIP 330
The following BLAST results are available for this feature:
BLAST of TCONS_00017239 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CATB6.417e-13057.40Cathepsin B OS=Homo sapiens GN=CTSB PE=1 SV=3[more]
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