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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017235 ID=TCONS_00017235|Name=TCONS_00017235|organism=Clytia hemisphaerica|type=transcript|length=1229bp
CGCTTATCATGTGATAATTCTCTCAACCTAACCATTTCAGCTATTGAAAC
ATAATTGTACCTCAGAGGCTTGGGTTCaaatactttcactttcatttttg
ctTTCCCCACCTCAATTTTCGCATCGATAGCAGGCAATCAGTAGTCATCA
AAGAAGCATTCTTACTTATTACATAAATTCAACTGCTGTTTAGACAAAGA
CTTGTCAGGATGAATGCTCTGGCATTGTGTTGTCTATTATCAGTTGCTTT
TGCAAAACCATCACAAAATGGTTTATACAACCCTTTGTTTCAAGATATCA
TTGATGAAGTCAATAGTAAACAAACAACATGGAAAGCCGGTCATAATTTT
GATGCCAATGTTGACCATGCTTATTTGAAGCATTTATGTGGAACTTTTCT
TGATGACCCCATCAGAGAATCATTGCCAGAGAAACAAGATTTTGAAACAG
TTGAGCTGCCAGATGAATTTGACTCTCGTACAAAATGGGGAGAGATTTGT
CCAAGCACAAAAGAAGTCCGTGACCAAGGAAACTGTGGCAGCTGCTGGGC
ATTTGGTGCTGTAGAAGCTTTTACTGATCGTATCTGTATTGCATCGAACG
GTGAAAAGAAACCTCACATCTCTGCTGAAGATCTTCTTTCTTGTTGTGGT
TTCTGGTGTGGAATGGGTTGCAATGGAGGTTTCCTCGGAGGTGCCtggaa
ctttttcaaaagaactgGATGTGTTACCGGTGGACAATACAGTACCAAGG
AAGGCTGTAGACCATACAGCATCCCAGCCTGTGAACACCACACTACTGGA
CACTTGAAACCATGCTCTGGAGATTCTCATACaccaagctgtgagaaaga
atGCAGACAAGGCTACAATGTCAGCTACACTGAAGACAGACATTACGTTA
AAACCAAATACACTGTTTCAAGCGACCAAACTAAAATCATGACAGACATT
ATGACCAATGGACCAGTTGAAGGAGCTTTCACTGTCTATGCTGACTTCCC
CAACTACAAATCAGGTGTTTATCAACACACCACTGGATCACAACTTGGTG
GTCATGCCATCAAAATCCTTGGATGGGGTACTGAGAGCGGAACACCTTAC
TGGTTGGTTGCCAACTCATGGAATCCAGACTGGGGAAACAAAGGGTTTTT
CAAGATTAAACGTGGAGGAAATGAATGTGGCATCGAATCCTCAATCACTG
CTGGAATCCCTGcataaatttaaaatgaa Run BLAST on NCBI transcript from alignment at sc0000261:256416..271035+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017235 ID=TCONS_00017235|Name=TCONS_00017235|organism=Clytia hemisphaerica|type=transcript|length=14620bp|location=Sequence derived from alignment at sc0000261:256416..271035+ (Clytia hemisphaerica)
CGCTTATCATGTGATAATTCTCTCAACCTAACCATTTCAGCTATTGAAAC
ATAATTGTACCTCAGAGGCTTGGGTTCaaatactttcactttcatttttg
ctTTCCCCACCTCAATTTTCGCATCGATAGCAGGCAATCAGTAGTCATCA
AAGAAGCATTCTTACTTATTACATAAATTCAACTGCTGTTTAGACAAAGA
CTTGTCAGGTAAagcttttcattaaatttgatgttatttaagattttttc
atttccataagCCCTCCTAGGCACACAAGcttggacattttcttttttga
tgttgaTGTTTCTATACATTTTGgacatttccaaatgaattatttttgtg
tcttctcacaaatccaaaaatataATTAGAAGATTCAGGATAGGGGGGGT
GCTTCAAAAAGGTACGGTCAACAGCTCTAACCTGGGACTATCTggcaaaa
catgggacggcaattcggggCGGCCACCATTATTTCACCACCAACGACca
caaacctccaaagtcaatTAATTAACACAACCGCAAATCGTAGATAGCAT
ATAATGTGAATACACTACACTCACCAGGTTTGCTTTCATACTGTAAAAGG
AACAAATATTTGGGACGAGTAGAAATGCGTGAATGTGATCGCGCGCATTC
Gcgcacaagtgttacgcgtaagccaaatcgcgtattacgaacaacctcta
aattgccgagtacaggagaaaaaatcaaaattcaaaatggcggccaagcc
cacgctgataactatcaaaaatctttgtttttcaatcagctaaattgcag
ctcaataaatcaatgaaataatttgaaataaaaagtaaacaaaccttgaa
cctttcatgaatccaaataaataaaagtattcatctaaagtgaagattNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNtgccaactaaaaatttctctgcggggtcactggcaagg
agttacgacttcagacttaagattccaattcttgtgtaggctgcaactac
actgccaattgatctgtattacaaatacttccaaatgggtccataagtta
agaaaatgaaattatcatctagcacgggggttttgtttttaaaaacaaac
ttcaaaataaaattgttaatgaacttgttacttaaaaaatatcacttact
tacataatttatttatggtataacacccctttcttaaataaatggcctct
taaagtcttttatgtttgccgcaagaagggagaaaaatttaatttgaccc
ccggttttttctctctttttctaacTACCGTAGGTCGGGGAAACTTCGGA
ATGAAGGAAACTTCGGACTAAAATCTTTAACAAGTGATTACTTCGCGAGG
ATGTAACATTTTATcgtacttttttctttcacagtTCAGAAATGAAGCAC
ACTCGACGATACATATCAAGCGACGGAAAGCCgaaagaaaaacgaagaag
aaattgaagaaaaccaCGATATTTTACCATCTTCCATTGTAAAGAGATTT
GTTGGATATCTAAAGCGGCAACCTCATAATTTTATTTACGTGATGAAAAG
AGGAGACATTGAATGTAACGTTAAAAGTTATTTGGGCTAAAAATATGCAT
TCCTTAATCTTCAATAGCTCTTCAAAGTTGCTCTATAAATTCGCCGAGAA
AGTCGCTGCGAGAATAGCTTTACCGTCAGCCGAGAAAGATCTTCTTTAAA
CGAATCCCAAGAGAAACATAATGTGATTTCGAAGCAATATTATAAGAACT
TTGTTCTGACGTCACCAGACATTGATGATAAACGTGCAGATAATTTGGTT
CTTTATTAGTATAAAGTAAGGTAAagggaaaaccctttttttattagaag
tcGATGATGGTGGATTTTCTTCATTAGAACATTAGAGTATGTCAAATAAT
TCTTGGAAAAAGCTTGCTTGTAAGTCGCTATCTGATCCACATAATACGTT
GGATGCAAATTCTAATGATTTAAATCTAAGATTATCATAACTAATTAAAG
AGCCTCCGGTACACTTGAAGACGCATTTGTCATACCCTTTCCATGGTGGT
ATGACATACAGTAGTGCATGtattttaggcgtacaaactttcgcgagcag
aaactttcgcgaatcgttggatataaatgaaaacttttgaatgaaaattg
ctttaaaatggaaaaatatacCTTAAATCCGATAAAGACTGTTGCTCTTC
GACTATAAAAGGTATTAAACTATAAAATTatgccaaaaatttcaaatttg
acgATTCGTGAAAGTTTGTTGTAAACTTTGCGCTATTTCGGCCTCGCAAA
ACTTTGTGCTCGTTTGTACGCTTAAAGTGATCAGTGATTTGGCCAGATCC
AGGTGCCTAATTTCTCCAAAATAAATATAATCTTTTTATTGCGGCTTTGA
CGTGAAAACTACCCCTAAGTTATTATCATTCAGCCCCTTAACGATAGCTA
AAATAGGTTAAACACTTTTATCATTTCGGTAGTCATAACAGGGGTGTTTC
CACTTAAACATTTTGTATTGAATGGTTGTGATAGAACCTGTTTACCTGTT
CCTTCTTTGCCTAATGGTAATGAATGTGTCCCCGGTGAAAAAAATACTGC
AAATTGATAATCGAAATATCATTAGCAAAAAGGCTGCTTTGGTGATATGA
CAGCCGATGGTTCTTACAGCTGGCTTACAAATCATTTTGACTCAAGAAAC
CTCTGTATCTATCACTATGTTACTGGAGGGTTATAGGTGGTTTTAGACCA
Tatcgaacttatcagaggaaccagatatttgtaattgtaaattcattgtc
ttttaacgagcgttgcactccttcgtaTGCTTCCGacatacttgctctat
tgtcttaaatgcGCAAGTGGGTGTATATAGTCGATATATTTTGGCTGTAT
TAACAAACTAAATTTCGTAATCGTAACATTTAAcctttaactcaaatcaa
aagaCGATAAGTTCGAAAATTTCAAACCCGTCAAATGGTATGTgcttatt
acacccctgtgtcacagatcctccagccccactggaaaatttggcaaaaa
taataatggaaatttttatcccctctgttggaaaaaaatccaccgGGGCC
ActgtgagataggggtgtcTTATTTAAAATAAGGTAAGACATATACAGCG
GTAATGAAGCAAAATTACGTACAATATTATGTTTCTAGTCTACCATTGAA
GCTCTTACTTACTCGGTaggtattttgtatttatttcttttcatctCTTT
TTAATCTAATCTATAAAGCCTGCATCGACGAACTTATGAACCGCCCGTAG
TCCCACTGGTAACAAAACATTTAATTAGTATTTAATTCGTGATTTACAGT
ACGCATTTCGTTGCAAGCCTTGTGTAGTATATTGGGTTACTTTTAACCAC
GATCTTGATCGCGCTAACTTCCTCGCACGTCCACCTGGTCCATCGTCGAA
CAATTatctaaatcaaaattgtaGTCTACTGTTGAAtagaaagtcaattt
tctatCTCTTGATAAATTGGAAACCTCATCAAAGCCTGGGATTTATTATT
CCACTGGCTGTGTAGAAAAAAGCAGTGGCCTCCTAGTATAGTCAAGTTGA
ATATGAAAGTCAACAGTGACTTAAGTTATTTAAAGCGATATTTTTGGCAA
ACATTAAATTTCACTTGACTTGTATAAAAAACACCCATTTGTCCACAGCG
ATGGCTTTATGCTGCTTTGATTCCGATTTCACTGAAACTACTAAAGTGCA
TGTATACGTAATACGGGAATGTATACAGGAATCAAAACTAAATTCCCATA
TtgcgaaaaataaaacttgaaacagAACATGAACATttagctctctcgct
tatatCTCTATAACACCCATGTTTCACACAGCCCCGGTGGATCTTCACTC
AAAACAACACATAAACAAGACGAcatgaagtcgaaaatttcgcctagaat
ttgaaccgcatgggaaaaagaagaagtagagattaaagctaatctgaaat
ctactttacatcgagccttgatgaaacaattttacaagaacaaggaggct
taaaatcgctaaaaaaataagaccaatttaagaacaattgctgtttaatt
tttaagaactcttacaaagtatatgcttataaaaaataaatatgctcaca
ttgtgcgccgtcccttgtttactctgtaagaactaattaccgaaagatat
atcaccgtctatcatgagttattgagttaattcttataaagtatatgctt
acaagaaaagtaaaaatactCATACTttacgccatcccttgtttactttg
taagaactaattaccgaacgGTAtctcaccgtctatcaagagttattgag
ttgattcttataaagtatatgcttacaagaaaagtaaaaatactCATACT
ttacgccatcccttgtttactttgtaagaactaattaccgaaagatatat
caccgtctatcatgagttattgagttgattcttataaagtatatgcttat
aagaaaaataaatatgctcatattatttgctgtcccttgtttactttgta
agaactaattaccgaaaggtatatcaccgtctatcatgagttattgagtt
gattcttataaagtatatgcttataagaaaaataaatatgctcatattgt
tTGCTGTCCCTtgtttactttgtaagaactaattatcgaaaggtatatca
ccgtctatcatgagttattgagttgattcttataaagtatatgcttataa
gaaaaaaaataaaaaaacaatcagTTATATGCTTAAATTTGTGGAATTAA
TATTCGAGCAAAAAAAACGCGACTTATGATTATCTCCATAGTATATACTG
AACCAACTAACAAGAGAACGCCCGGGTCAAACGCCAACGCCATAATCTTC
GCCCCAAAAAAATTCTCCcccgccgccgccgcagaaaggctatcgtaata
ctttcgctaagcgaaattaaaaatagggttgaaatttttatcaaaatttg
ttgGGGATCGTTTTGAAGtgcttttttcaatttcctaatgaggttgaaat
tgaaaagatgTTTCCCCACCGGGTGCGAAATCTCGGTCCAATTTTTCAAG
TGGAGCGGGATTCGACACAAGGGTGTTTTAAAAAGACCGTTGttacttta
tttgaaagtcgGAAAAGTTTATGGGCTTCCGAAAAAAATAATACTCAGAA
CTTAGCATCCAAAAGTCCcgcgaaaaataagaaaaatatctaaTGAAATA
TAACGATATGATAGTATCATAAGGAAACGAGACAGTCTAATtgaaaaagt
tcttataaaacgtGTTTGTTTCACCAATTCACTCTGAGGAAGACCCTCTC
ATCATGTGTTTAGCGTCCATAAAAACTAATGATTGGTTGATTAGTTTTAT
TATTCACACTTCCATCGCACGCCCAGAAaattaatgaccaattaagcgcA
ATTCGTATCTTTCTGTCGTTAATTTCTCGGCTCACACGAATTTGTCTCTt
ggtatttttcaacaaatggcacttcaaattcaatgtttttgttttgaaat
agcGCAGTATCCAGTCATGATGGTAGATCGTTGGAGTGACGGCAAATCAT
TCCGAAGTTTAACATTTTAAGAAGTTGACCTTTCTGAAATTGAGATGGTG
TTTCTTTCATAATGACCTGGCTGATTTACTTGTaacgattgttttctgaa
agacAATAACACAAATGTTATGTACAGTAAGTTTGGTTGATCTTTTTTTC
ATATTCCaggagaaataaagaaaaaacttgaaaatctgtCCGAAGTTTCC
CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNttcccgc
gtgttagtgtagacacaactttaatctggggaaatgaagcgttttcattg
gtctaaaatcacggatgatcacgtgaccagaatttttatccagggaaatg
ccgtggcggcaatgttttactttagtgagattgaccattttgttgttttg
atttgagcgggcgaaatttctgtacaaaccaaaatatggcttcgttggaa
taccggttaaAACACTTGTGAAGCAAGCAAGCATCCAAACACAGACAGTC
TGTGTCACAGATATCAAAAGAAGTCTGTTCTTCCGCAGAAAATTGTGAGA
TCTGCTATCGACACTCTGTCACTTTGACATGTCAATCAATCGCACACGCT
GGAAAAAAGTctctagagaaaaacaacacaaaacaaaaaatgtttgataT
TTGCTatttccagacggtgtcaatcgaacgaatcgaatgccgaatcaatt
gaacgcaattgaaaaCAATCTAATAATTGCAATacgattgtcaaacgcaa
tcaaatcgcaatcgaatattacccaggatttgccgttcgattgcttcaat
TATGTTTGATTGTATTCAATTACGTTCAATATtacgttcaattgattcaa
ttgtattagattttattcgctttgtcAGGCTAGCTCtgaagctctaaaac
agcatctaataacttgaaaaccagaatatgattcttcaatcaGTGAGggt
ggaacttcgatttttgaggattacgattttactagttttttagcgatttt
tgcctcgctaacccaaatctcgcaacctctttaccttaaggaagatcgaa
attcgaacgcatagcagaaatttgttcatcttcacaggatcgattctcaa
caacaaaatacatcttttggtctttgggtttgtttctgacatttttcctt
caaagaatatcgatcactttcctttttccCTTGAGCGCGCTAGAAAAAAT
GATAAGCTCGCGTTTTCGCGCGgtcgaataaagatgaggcggcaatcttg
cactgagggtgctacttagtttccgccctattttgcgcccacgataaaat
ggtccaaacacggggctattccaaatgataaactatgtcgttatgtaagt
gtttattttctgagagatacaaatagtatattgaatattattaacttatt
tatttatttatttatttatttaagtatttttgagcgcaaatttaaatata
ggTTGAATATTacgtttattcctcaaaccccccggaaaagtttttttgct
gacttagctattttacaaatctcaaaaaagaactcccataggaatttcAA
TACCTTaccccgattggttaattttggaACGGCTTGAAGAAAGTATAATG
GCAGATGATtggataattttaaaagtttctgaggaaatgtgtgtaattta
tcgatgttgatggcttgttgattcttaaaGAAAGTAGAtgacaggtatag
ctttttctaatcctggaatatcgaggttccagctacactgtcaatgggaa
tcaaaactataaagtgcacttaccaacatcaatttgtcagatctaacaaa
attaataaccgcactatcatcattgacaataaaacaaaccaatttTCTGT
CAacagccttgtaaacattccaacaacttccagcgaaatgatctatcaca
gtttagtctaccatttttagtgcggtccgaggattgagctgagaacgcct
gcgcgggtgaaaaacttcaatctgtcaatcattttctcaagcaaagagtt
cgcggagcgattctagctttaccaTAGTGCCgtggatcatcaatggatag
tattcaatcatcattatccctttattttcattcctagaacttttgcaaaa
aaaaaatgaaaaaaaaaatagaaaagttgtattttttactgctctattca
catactgaatttgaaaaatcttctatgtggcgtttttttgcagatgctaa
tcaaaaatagtgtgacattgtaaaaaatgctcaaaatcaactttttggaa
TAACTCTTCATATTTTTTGAGTCAGCCATAGAGATTTCACAGGGTAATAG
ACCTCAACGTGGagatatgattaaaaaaaaaattttgttatttgagTCAA
AATTGTGGCTGCAGATAAaaaattctagtttttttttaaagtgtaaGCCA
CACGATATTGAAAAGTGATCTCTGAATGGGACCTTCTAGACTTGAAAGAA
GAAAGgctgaattttccaaaaagtgttaAATGNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NAAGCCACAAaatttcgttctttttgcaaCAGGTAGATAAATTATTCAGC
TTAACCATGGATGTATTTTGACATGTAAGCCACATGATGGCCTCATTCTA
TGAGTAAAATAGTGGATGACataaaaaatgtcacaaaacaggggttaatt
tttgattagcatctgcaaacttcaaaaaactgatttttgtcccacctttg
caggactttggcttaagtgcttgcgtgcagcataagGTACAAAGTCCAAG
CATgcatttcccgtaatttttgtatgaagagttaggtctatactgtttgT
ACGGTACTTAGGCACTCAGCCGCCCATACTCTagaaagctctaacagagt
gaaaaactcatcaaacataatcgtaatcgatcgaaatcgaagattaatcg
aatgtaattgacaatcaatcgaacatagtcaactatcaatgaACCAAttt
aaccttactcgaacgcaatcaaatattacccagtgttaaaagttcttccg
tctcagacggatttccgtctcagagAAGTATATAGAGAgacttttccgtc
tcaaaatcctgcataattcaccaaaagttcaagaatatgtgctaatttgc
tgtgtaaaatccattttccgtctcagacgaaaatcttgctttgaccactg
attACCCAGGAATCTGCCGtgcgattgagattcgattacaaTCTACAATC
CAATCGCAATTATTCTATCGCGTTCGATTAtgttcaattggttcgattgc
aatttttgtttgaagttgttcaattgacaccgtctggatattTGATGTGA
TTAAATTGTGTATTTAGATTGTTAAAATTACTtcttcaaattatgtactt
ttaaaatgctttaaaaatacatttggttGTGATTATGGGATGGTAAAAGT
TTAATTGATAAACTTGattgaagtatcaaaacaaatttgttaacACCCAG
ATGGGAGTTAATTTTTTAcaacaaaacatcaaatcaaactttgaaaaagc
tTAAACCAAAGGTGCTACACTCCCGAGGGTAAACTAGTCAATTTCATAGA
GGTAATGAGAAATGTACAGACAtcgaaaaaatataattcacAATGGCGTC
tgaaattaaaactgaaaaaagatgAGTATGATTACCATTGTACAGAAATA
CCTCCTTAGCCCCTGTTCCGATTTTTCAGGTTATAATTTTTGGATTTGTG
AGAAGACATATATTATTTTAAACCCCATCTGGGTGTTCctaaagggctac
ttagactacacaatatattgacaaaCAATATTTCACAATATAGTTTTCAG
ATCGTAATGTACGGAGTAAAGAACAGGTGctttattataaaaagaaattt
atattgttggaatattgcaaattgaGATAACTTGCAGATACCTTATCAAT
ATATTTCTAacactcagcaatatatcatcaatatattgcctgacaatata
ttgtgtagtgtatgtagcccttaaaaGGTAGGGTACCCCAATGGGGCCCT
TAATTGAGCTACTTATTGGGGTACCCCTTTTGCCCTAAATTTTACAAACT
GCTGATGCTCGAGTTCATGATAAAATGATACTAAAACCCCTGTTTATTAA
aacaattggcaaaaatcaaGTAATTTTTTGAACTGTCATCTctgtttcaa
aaagattcactactcaaaaaagcaaaataaaataaaaaattcaaaattat
gtCTGAAAGTATTTTAATTCCATACTGCTATACTATAACTGTAATTGATA
TTTATTAGAAGCTAAATTCTAATTATTAGCTGTTAAAAAGTGCTGTAATT
TTTTGCAGGATGAATGCTCTGGCATTGTGTTGTCTATTATCAGTTGCTTT
TGCAAAACCATCACAAAATGGTTTATACAACCCTTTGTTTCAAGATATCA
TTGATGAAGTCAATAGTAAACAAACAACATGGAAAGCCGGTCATAATTTT
GATGCCAATGTTGACCATGCTTATTTGAAGCATTTATGTGGAACTTTTCT
TGATGACCCCATCAGAGAATCATTGCCAGGTACACATGATTATCACTTGA
TCAatatttatcttttcaatatttatctTATACAagttttttctttgctt
ttacTTTGGAAGTTAAATAATATACTTTGAGTGTTGGATGACACATGTGA
CATTGACATGAGTTCTATAAGACAAGAATTGATTGAGTTGATACGGTCTG
AACACTCTTATATTTCATTAGTGTCGTTTTTATTCTTCACTTTGGGCATT
TTAAGAGAAGTCTCTAGGAACACTCTTCAGATAAAACATCTAAATATATT
TTAGAGAATAGGGGATAATTATTCTTTCATGATATTTTATTTTAGAGAAA
CAAGATTTTGAAACAGTTGAGCTGCCAGATGAATTTGACTCTCGTACAAA
ATGGGGAGAGATTTGTCCAAGCACAAAAGAAGTCCGTGACCAAGGAAACT
GTGGCAGCTGCTGGGTATGTTGTTCaaagaatttaaaacaaaatctaaAG
AGCACTGAAGGGATTATGCCATTGGCCGAAAAAGGCTTTCACTATTTATG
CTTCGTCATATGGGAAGTTGTGTTTGAGGGCGTTGCAGTTGTGTCTATCG
CTTTTGCCTAACCTCACAATTTATTCTAAAGATCTTAGGATTAGGAGTGt
cttgtattttttataacAGAGATGGCTAACTAATTCATTCCTTGAGCTGA
TTTTTTGTACCTagcaaaattttatatattttttcacaaCAGGCATTTGG
TGCTGTAGAAGCTTTTACTGATCGTATCTGTATTGCATCGAACGGTGAAA
AGAAACCTCACATCTCTGCTGAAGATCTTCTTTCTTGTTGTGGTTTCTGG
TGTGGAATGGGTTGCAATGGAGGTTTCCTCGGAGGTGCCtggaacttttt
caaaagaactgGATGTGTTACCGGTGGACAATACAGTACCAAGGAAGGCT
GTAGACCATACAGCATCCCAGCCTGTGAACACCACACTACTGGACACTTG
AAACCATGCTCTGGAGATTCTCATACaccaagctgtgagaaagaatGCAG
ACAAGGTTTGATCTATTTTCATCATGTGGAAAGATTATTTATCTNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATATTATTT
AATAATCCAAATTATATTCTAGGCTACAATGTCAGCTACACTGAAGACAG
ACATTACGTTAAAACCAAATACACTGTTTCAAGCGACCAAACTAAAATCA
TGACAGACATTATGACCAATGGACCAGTTGAAGGAGCTTTCACTGTCTAT
GCTGACTTCCCCAACTACAAATCAGGTTTGAATTTCATGGAAGATTTGAA
ATATGTAGAGCTGGCTCACTTATACTGGATATACTCTTAAAGCGGTAAAA
GATGTAAATTACCcatattttaaaagttctccTGTTTGATTTGGACAGTA
TTTCAAGTAGAGTTGTCtgatgaaaaattaataaataaataatgtaTCTT
TAACTTTGTGTGATCAGTGTTAGTGATGCCaacaaaataacatttttctt
ttttgttataGGTGTTTATCAACACACCACTGGATCACAACTTGGTGGTC
ATGCCATCAAAATCCTTGGATGGGGTACTGAGAGCGGAACACCTTACTGG
TAAGGAAAATCTATATCGAAATTGTGACCttaataataaatttttttttg
ctgcaAATAGTTTCAGACAGTTTCAATAAAACTTACATTAGAAAAGAACC
CAACATTTATCTCCTAAAATCCATGTAAGTATCCGGATTTCAATTTTGCA
AGCAGGTATTTGCAACTAACTCATTTTTTCCTGCCTTTCATCAGTATTAC
AAGACTTAGATAGCCGAAAGTAATATTTTAATCTATCATTTATGTAGGTT
GGTTGCCAACTCATGGAATCCAGACTGGGGAAACAAAGGTTCGTTTTCTG
CtcagaaagaatttttttttctatctgaGGAAACTGGGTTCGAGATTACA
GGTTAATGTCTGACAttcttaaagattttaaaaatcttgatgttatttcc
ttgtaaattcattcCCAGGCCCTTCGGAAGCCAACTGCACATTCaagggt
tgataggtgtattaCTTTGATAGCGTATGAAAAGTGAGAAGGTTGGAAAt
agtttatatattatattggcTTCTTTTTTTAAAGGGTTTTTCAAGATTAA
ACGTGGAGGAAATGAATGTGGCATCGAATCCTCAATCACTGCTGGAATCC
CTGcataaatttaaaatgaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017235-exon-sc0000261-1491911889:256416..256623 | TCONS_00017235-exon-sc0000261-1491911889:256416..256623 | Clytia hemisphaerica | exon |
| TCONS_00017235-exon-sc0000261-1510915933:256416..256623 | TCONS_00017235-exon-sc0000261-1510915933:256416..256623 | Clytia hemisphaerica | exon |
| TCONS_00017235-exon-sc0000261-1575043694:256416..256623 | TCONS_00017235-exon-sc0000261-1575043694:256416..256623 | Clytia hemisphaerica | exon |
| TCONS_00017235-exon-sc0000261-1491911889:266674..266894 | TCONS_00017235-exon-sc0000261-1491911889:266674..266894 | Clytia hemisphaerica | exon |
| TCONS_00017235-exon-sc0000261-1510915933:266674..266894 | TCONS_00017235-exon-sc0000261-1510915933:266674..266894 | Clytia hemisphaerica | exon |
| TCONS_00017235-exon-sc0000261-1575043694:266674..266894 | TCONS_00017235-exon-sc0000261-1575043694:266674..266894 | Clytia hemisphaerica | exon |
| TCONS_00017235-exon-sc0000261-1491911889:267211..267329 | TCONS_00017235-exon-sc0000261-1491911889:267211..267329 | Clytia hemisphaerica | exon |
| TCONS_00017235-exon-sc0000261-1510915933:267211..267329 | TCONS_00017235-exon-sc0000261-1510915933:267211..267329 | Clytia hemisphaerica | exon |
| TCONS_00017235-exon-sc0000261-1575043694:267211..267329 | TCONS_00017235-exon-sc0000261-1575043694:267211..267329 | Clytia hemisphaerica | exon |
| TCONS_00017235-exon-sc0000261-1491911889:267608..267920 | TCONS_00017235-exon-sc0000261-1491911889:267608..267920 | Clytia hemisphaerica | exon |
| TCONS_00017235-exon-sc0000261-1510915933:267608..267920 | TCONS_00017235-exon-sc0000261-1510915933:267608..267920 | Clytia hemisphaerica | exon |
| TCONS_00017235-exon-sc0000261-1575043694:267608..267920 | TCONS_00017235-exon-sc0000261-1575043694:267608..267920 | Clytia hemisphaerica | exon |
| TCONS_00017235-exon-sc0000261-1491911889:269938..270090 | TCONS_00017235-exon-sc0000261-1491911889:269938..270090 | Clytia hemisphaerica | exon |
| TCONS_00017235-exon-sc0000261-1510915933:269938..270090 | TCONS_00017235-exon-sc0000261-1510915933:269938..270090 | Clytia hemisphaerica | exon |
| TCONS_00017235-exon-sc0000261-1575043694:269938..270090 | TCONS_00017235-exon-sc0000261-1575043694:269938..270090 | Clytia hemisphaerica | exon |
| TCONS_00017235-exon-sc0000261-1491911889:270327..270414 | TCONS_00017235-exon-sc0000261-1491911889:270327..270414 | Clytia hemisphaerica | exon |
| TCONS_00017235-exon-sc0000261-1510915933:270327..270414 | TCONS_00017235-exon-sc0000261-1510915933:270327..270414 | Clytia hemisphaerica | exon |
| TCONS_00017235-exon-sc0000261-1575043694:270327..270414 | TCONS_00017235-exon-sc0000261-1575043694:270327..270414 | Clytia hemisphaerica | exon |
| TCONS_00017235-exon-sc0000261-1491911889:270663..270703 | TCONS_00017235-exon-sc0000261-1491911889:270663..270703 | Clytia hemisphaerica | exon |
| TCONS_00017235-exon-sc0000261-1510915933:270663..270703 | TCONS_00017235-exon-sc0000261-1510915933:270663..270703 | Clytia hemisphaerica | exon |
| TCONS_00017235-exon-sc0000261-1575043694:270663..270703 | TCONS_00017235-exon-sc0000261-1575043694:270663..270703 | Clytia hemisphaerica | exon |
| TCONS_00017235-exon-sc0000261-1491911889:270950..271035 | TCONS_00017235-exon-sc0000261-1491911889:270950..271035 | Clytia hemisphaerica | exon |
| TCONS_00017235-exon-sc0000261-1510915933:270950..271035 | TCONS_00017235-exon-sc0000261-1510915933:270950..271035 | Clytia hemisphaerica | exon |
| TCONS_00017235-exon-sc0000261-1575043694:270950..271035 | TCONS_00017235-exon-sc0000261-1575043694:270950..271035 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000261 | supercontig | sc0000261:256416..271035 + |
Blast
BLAST of TCONS_00017235 vs. Swiss-Prot (Human)
Match: CATB (Cathepsin B OS=Homo sapiens GN=CTSB PE=1 SV=3) HSP 1 Score: 379.022 bits (972), Expect = 6.145e-129 Identity = 190/331 (57.40%), Postives = 239/331 (72.21%), Query Frame = 3
Query: 222 ALCCLLSVAFAKPSQNGLYNPLFQDIIDEVNSKQTTWKAGHNFDANVDHAYLKHLCGTFLDDPIRESLPEKQDF-ETVELPDEFDSRTKWGEICPSTKEVRDQGNCGSCWAFGAVEAFTDRICIASNGEKKPHISAEDLLSCCGFWCXXXXXXXXXXXAWNFFKRTGCVTGGQYSTKEGCRPYSIPACEHHTTGHLKPCSGDSHTPSCEKECRQGYNVSYTEDRHYVKTKYTVSSDQTKIMTDIMTNGPVEGAFTVYADFPNYKSGVYQHTTGSQLGGHAIKILGWGTESGTPYWLVANSWNPDWGNKGFFKIKRGGNECGIESSITAGIP 1211
+LCCLL +A A+ + ++PL ++++ VN + TTW+AGHNF NVD +YLK LCGTFL P P++ F E ++LP FD+R +W + CP+ KE+RDQG+CGSCWAFGAVEA +DRICI +N +SAEDLL+CCG CG GCNGG+ AWNF+ R G V+GG Y + GCRPYSIP CEHH G PC+G+ TP C K C GY+ +Y +D+HY Y+VS+ + IM +I NGPVEGAF+VY+DF YKSGVYQH TG +GGHAI+ILGWG E+GTPYWLVANSWN DWG+ GFFKI RG + CGIES + AGIP
Sbjct: 7 SLCCLLVLANARSRPS--FHPLSDELVNYVNKRNTTWQAGHNF-YNVDMSYLKRLCGTFLGGP---KPPQRVMFTEDLKLPASFDAREQWPQ-CPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIP 330
The following BLAST results are available for this feature:
|
