TCONS_00017234 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017234
Unique NameTCONS_00017234
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1348

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017234 ID=TCONS_00017234|Name=TCONS_00017234|organism=Clytia hemisphaerica|type=transcript|length=1348bp
GCCGCTTCTGCGACTACCATTATGATTCACCACGTGGTTTGATTTTCGCG
GGCTTTTTTAGAAGCTTGGTAACGAGTTGTCATgtgattttcatcaaaac
acacCGCTTATCATGTGATAATTCTCTCAACCTAACCATTTCAGCTATTG
AAACATAATTGTACCTCAGAGGCTTGGGTTCaaatactttcactttcatt
tttgctTTCCCCACCTCAATTTTCGCATCGATAGCAGGCAATCAGTAGTC
ATCAAAGAAGCATTCTTACTTATTACATAAATTCAACTGCTGTTTAGACA
AAGACTTGTCAGGATGAATGCTCTGGCATTGTGTTGTCTATTATCAGTTG
CTTTTGCAAAACCATCACAAAATGGTTTATACAACCCTTTGTTTCAAGAT
ATCATTGATGAAGTCAATAGTAAACAAACAACATGGAAAGCCGGTCATAA
TTTTGATGCCAATGTTGACCATGCTTATTTGAAGCATTTATGTGGAACTT
TTCTTGATGACCCCATCAGAGAATCATTGCCAGAGAAACAAGATTTTGAA
ACAGTTGAGCTGCCAGATGAATTTGACTCTCGTACAAAATGGGGAGAGAT
TTGTCCAAGCACAAAAGAAGTCCGTGACCAAGGAAACTGTGGCAGCTGCT
GGGCATTTGGTGCTGTAGAAGCTTTTACTGATCGTATCTGTATTGCATCA
AACGGTGAAAAGAAACCTCACATCTCTGCTGAAGATCTTCTTTCTTGTTG
TGGTTTCTGGTGTGGAATGGGTTGCAATGGAGGTTTCCTCGGAGGTGCCt
ggaactttttcaaaagaactgGATGTGTTACCGGTGGACAATACAGTACC
AAGGAAGGCTGTAGACCATACAGCATCCCAGCCTGTGAACACCACACTAC
TGGACACTTGAAACCATGCTCTGGAGATTCTCATACaccaagctgtgaga
aagaatGCAGACAAGGCTACAATGTCAGCTACACTGAAGACAGACATTAC
GTTAAAACCAAATACACTGTTTCAAGCGACCAAACCAAAATCATGACAGA
CATTATGACCAATGGACCAGTTGAAGGAGCTTTCACTGTCTATGCTGACT
TCCCCAACTACAAATCAGGTGTTTATCAACACACCACTGGATCACAACTT
GGTGGTCATGCCATCAAAATCCTTGGATGGGGTACTGAGAGCGGAACACC
TTACTGGTTGGTTGCCAACTCATGGAATCCAGACTGGGGAAACAAAGGGT
TTTTCAAGATTAAACGTGGAGGAAATGAATGTGGCATTGAATCCTCAATC
ACTGCTGGAATCCCTGcataaatttaaaatgaaaatgatttgtttttA
Run BLAST on NCBI

transcript from alignment at sc0000261:256312..274821+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017234 ID=TCONS_00017234|Name=TCONS_00017234|organism=Clytia hemisphaerica|type=transcript|length=18510bp|location=Sequence derived from alignment at sc0000261:256312..274821+ (Clytia hemisphaerica)
GCCGCTTCTGCGACTACCATTATGATTCACCACGTGGTTTGATTTTCGCG GGCTTTTTTAGAAGCTTGGTAACGAGTTGTCATgtgattttcatcaaaac acacCGCTTATCATGTGATAATTCTCTCAACCTAACCATTTCAGCTATTG AAACATAATTGTACCTCAGAGGCTTGGGTTCaaatactttcactttcatt tttgctTTCCCCACCTCAATTTTCGCATCGATAGCAGGCAATCAGTAGTC ATCAAAGAAGCATTCTTACTTATTACATAAATTCAACTGCTGTTTAGACA AAGACTTGTCAGGTAAagcttttcattaaatttgatgttatttaagattt tttcatttccataagCCCTCCTAGGCACACAAGcttggacattttctttt ttgatgttgaTGTTTCTATACATTTTGgacatttccaaatgaattatttt tgtgtcttctcacaaatccaaaaatataATTAGAAGATTCAGGATAGGGG GGGTGCTTCAAAAAGGTACGGTCAACAGCTCTAACCTGGGACTATCTggc aaaacatgggacggcaattcggggCGGCCACCATTATTTCACCACCAACG ACcacaaacctccaaagtcaatTAATTAACACAACCGCAAATCGTAGATA GCATATAATGTGAATACACTACACTCACCAGGTTTGCTTTCATACTGTAA AAGGAACAAATATTTGGGACGAGTAGAAATGCGTGAATGTGATCGCGCGC ATTCGcgcacaagtgttacgcgtaagccaaatcgcgtattacgaacaacc tctaaattgccgagtacaggagaaaaaatcaaaattcaaaatggcggcca agcccacgctgataactatcaaaaatctttgtttttcaatcagctaaatt gcagctcaataaatcaatgaaataatttgaaataaaaagtaaacaaacct tgaacctttcatgaatccaaataaataaaagtattcatctaaagtgaaga ttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNtgccaactaaaaatttctctgcggggtcactggc aaggagttacgacttcagacttaagattccaattcttgtgtaggctgcaa ctacactgccaattgatctgtattacaaatacttccaaatgggtccataa gttaagaaaatgaaattatcatctagcacgggggttttgtttttaaaaac aaacttcaaaataaaattgttaatgaacttgttacttaaaaaatatcact tacttacataatttatttatggtataacacccctttcttaaataaatggc ctcttaaagtcttttatgtttgccgcaagaagggagaaaaatttaatttg acccccggttttttctctctttttctaacTACCGTAGGTCGGGGAAACTT CGGAATGAAGGAAACTTCGGACTAAAATCTTTAACAAGTGATTACTTCGC GAGGATGTAACATTTTATcgtacttttttctttcacagtTCAGAAATGAA GCACACTCGACGATACATATCAAGCGACGGAAAGCCgaaagaaaaacgaa gaagaaattgaagaaaaccaCGATATTTTACCATCTTCCATTGTAAAGAG ATTTGTTGGATATCTAAAGCGGCAACCTCATAATTTTATTTACGTGATGA AAAGAGGAGACATTGAATGTAACGTTAAAAGTTATTTGGGCTAAAAATAT GCATTCCTTAATCTTCAATAGCTCTTCAAAGTTGCTCTATAAATTCGCCG AGAAAGTCGCTGCGAGAATAGCTTTACCGTCAGCCGAGAAAGATCTTCTT TAAACGAATCCCAAGAGAAACATAATGTGATTTCGAAGCAATATTATAAG AACTTTGTTCTGACGTCACCAGACATTGATGATAAACGTGCAGATAATTT GGTTCTTTATTAGTATAAAGTAAGGTAAagggaaaaccctttttttatta gaagtcGATGATGGTGGATTTTCTTCATTAGAACATTAGAGTATGTCAAA TAATTCTTGGAAAAAGCTTGCTTGTAAGTCGCTATCTGATCCACATAATA CGTTGGATGCAAATTCTAATGATTTAAATCTAAGATTATCATAACTAATT AAAGAGCCTCCGGTACACTTGAAGACGCATTTGTCATACCCTTTCCATGG TGGTATGACATACAGTAGTGCATGtattttaggcgtacaaactttcgcga gcagaaactttcgcgaatcgttggatataaatgaaaacttttgaatgaaa attgctttaaaatggaaaaatatacCTTAAATCCGATAAAGACTGTTGCT CTTCGACTATAAAAGGTATTAAACTATAAAATTatgccaaaaatttcaaa tttgacgATTCGTGAAAGTTTGTTGTAAACTTTGCGCTATTTCGGCCTCG CAAAACTTTGTGCTCGTTTGTACGCTTAAAGTGATCAGTGATTTGGCCAG ATCCAGGTGCCTAATTTCTCCAAAATAAATATAATCTTTTTATTGCGGCT TTGACGTGAAAACTACCCCTAAGTTATTATCATTCAGCCCCTTAACGATA GCTAAAATAGGTTAAACACTTTTATCATTTCGGTAGTCATAACAGGGGTG TTTCCACTTAAACATTTTGTATTGAATGGTTGTGATAGAACCTGTTTACC TGTTCCTTCTTTGCCTAATGGTAATGAATGTGTCCCCGGTGAAAAAAATA CTGCAAATTGATAATCGAAATATCATTAGCAAAAAGGCTGCTTTGGTGAT ATGACAGCCGATGGTTCTTACAGCTGGCTTACAAATCATTTTGACTCAAG AAACCTCTGTATCTATCACTATGTTACTGGAGGGTTATAGGTGGTTTTAG ACCATatcgaacttatcagaggaaccagatatttgtaattgtaaattcat tgtcttttaacgagcgttgcactccttcgtaTGCTTCCGacatacttgct ctattgtcttaaatgcGCAAGTGGGTGTATATAGTCGATATATTTTGGCT GTATTAACAAACTAAATTTCGTAATCGTAACATTTAAcctttaactcaaa tcaaaagaCGATAAGTTCGAAAATTTCAAACCCGTCAAATGGTATGTgct tattacacccctgtgtcacagatcctccagccccactggaaaatttggca aaaataataatggaaatttttatcccctctgttggaaaaaaatccaccgG GGCCActgtgagataggggtgtcTTATTTAAAATAAGGTAAGACATATAC AGCGGTAATGAAGCAAAATTACGTACAATATTATGTTTCTAGTCTACCAT TGAAGCTCTTACTTACTCGGTaggtattttgtatttatttcttttcatct CTTTTTAATCTAATCTATAAAGCCTGCATCGACGAACTTATGAACCGCCC GTAGTCCCACTGGTAACAAAACATTTAATTAGTATTTAATTCGTGATTTA CAGTACGCATTTCGTTGCAAGCCTTGTGTAGTATATTGGGTTACTTTTAA CCACGATCTTGATCGCGCTAACTTCCTCGCACGTCCACCTGGTCCATCGT CGAACAATTatctaaatcaaaattgtaGTCTACTGTTGAAtagaaagtca attttctatCTCTTGATAAATTGGAAACCTCATCAAAGCCTGGGATTTAT TATTCCACTGGCTGTGTAGAAAAAAGCAGTGGCCTCCTAGTATAGTCAAG TTGAATATGAAAGTCAACAGTGACTTAAGTTATTTAAAGCGATATTTTTG GCAAACATTAAATTTCACTTGACTTGTATAAAAAACACCCATTTGTCCAC AGCGATGGCTTTATGCTGCTTTGATTCCGATTTCACTGAAACTACTAAAG TGCATGTATACGTAATACGGGAATGTATACAGGAATCAAAACTAAATTCC CATATtgcgaaaaataaaacttgaaacagAACATGAACATttagctctct cgcttatatCTCTATAACACCCATGTTTCACACAGCCCCGGTGGATCTTC ACTCAAAACAACACATAAACAAGACGAcatgaagtcgaaaatttcgccta gaatttgaaccgcatgggaaaaagaagaagtagagattaaagctaatctg aaatctactttacatcgagccttgatgaaacaattttacaagaacaagga ggcttaaaatcgctaaaaaaataagaccaatttaagaacaattgctgttt aatttttaagaactcttacaaagtatatgcttataaaaaataaatatgct cacattgtgcgccgtcccttgtttactctgtaagaactaattaccgaaag atatatcaccgtctatcatgagttattgagttaattcttataaagtatat gcttacaagaaaagtaaaaatactCATACTttacgccatcccttgtttac tttgtaagaactaattaccgaacgGTAtctcaccgtctatcaagagttat tgagttgattcttataaagtatatgcttacaagaaaagtaaaaatactCA TACTttacgccatcccttgtttactttgtaagaactaattaccgaaagat atatcaccgtctatcatgagttattgagttgattcttataaagtatatgc ttataagaaaaataaatatgctcatattatttgctgtcccttgtttactt tgtaagaactaattaccgaaaggtatatcaccgtctatcatgagttattg agttgattcttataaagtatatgcttataagaaaaataaatatgctcata ttgttTGCTGTCCCTtgtttactttgtaagaactaattatcgaaaggtat atcaccgtctatcatgagttattgagttgattcttataaagtatatgctt ataagaaaaaaaataaaaaaacaatcagTTATATGCTTAAATTTGTGGAA TTAATATTCGAGCAAAAAAAACGCGACTTATGATTATCTCCATAGTATAT ACTGAACCAACTAACAAGAGAACGCCCGGGTCAAACGCCAACGCCATAAT CTTCGCCCCAAAAAAATTCTCCcccgccgccgccgcagaaaggctatcgt aatactttcgctaagcgaaattaaaaatagggttgaaatttttatcaaaa tttgttgGGGATCGTTTTGAAGtgcttttttcaatttcctaatgaggttg aaattgaaaagatgTTTCCCCACCGGGTGCGAAATCTCGGTCCAATTTTT CAAGTGGAGCGGGATTCGACACAAGGGTGTTTTAAAAAGACCGTTGttac tttatttgaaagtcgGAAAAGTTTATGGGCTTCCGAAAAAAATAATACTC AGAACTTAGCATCCAAAAGTCCcgcgaaaaataagaaaaatatctaaTGA AATATAACGATATGATAGTATCATAAGGAAACGAGACAGTCTAATtgaaa aagttcttataaaacgtGTTTGTTTCACCAATTCACTCTGAGGAAGACCC TCTCATCATGTGTTTAGCGTCCATAAAAACTAATGATTGGTTGATTAGTT TTATTATTCACACTTCCATCGCACGCCCAGAAaattaatgaccaattaag cgcAATTCGTATCTTTCTGTCGTTAATTTCTCGGCTCACACGAATTTGTC TCTtggtatttttcaacaaatggcacttcaaattcaatgtttttgttttg aaatagcGCAGTATCCAGTCATGATGGTAGATCGTTGGAGTGACGGCAAA TCATTCCGAAGTTTAACATTTTAAGAAGTTGACCTTTCTGAAATTGAGAT GGTGTTTCTTTCATAATGACCTGGCTGATTTACTTGTaacgattgttttc tgaaagacAATAACACAAATGTTATGTACAGTAAGTTTGGTTGATCTTTT TTTCATATTCCaggagaaataaagaaaaaacttgaaaatctgtCCGAAGT TTCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNttc ccgcgtgttagtgtagacacaactttaatctggggaaatgaagcgttttc attggtctaaaatcacggatgatcacgtgaccagaatttttatccaggga aatgccgtggcggcaatgttttactttagtgagattgaccattttgttgt tttgatttgagcgggcgaaatttctgtacaaaccaaaatatggcttcgtt ggaataccggttaaAACACTTGTGAAGCAAGCAAGCATCCAAACACAGAC AGTCTGTGTCACAGATATCAAAAGAAGTCTGTTCTTCCGCAGAAAATTGT GAGATCTGCTATCGACACTCTGTCACTTTGACATGTCAATCAATCGCACA CGCTGGAAAAAAGTctctagagaaaaacaacacaaaacaaaaaatgtttg ataTTTGCTatttccagacggtgtcaatcgaacgaatcgaatgccgaatc aattgaacgcaattgaaaaCAATCTAATAATTGCAATacgattgtcaaac gcaatcaaatcgcaatcgaatattacccaggatttgccgttcgattgctt caatTATGTTTGATTGTATTCAATTACGTTCAATATtacgttcaattgat tcaattgtattagattttattcgctttgtcAGGCTAGCTCtgaagctcta aaacagcatctaataacttgaaaaccagaatatgattcttcaatcaGTGA Gggtggaacttcgatttttgaggattacgattttactagttttttagcga tttttgcctcgctaacccaaatctcgcaacctctttaccttaaggaagat cgaaattcgaacgcatagcagaaatttgttcatcttcacaggatcgattc tcaacaacaaaatacatcttttggtctttgggtttgtttctgacattttt ccttcaaagaatatcgatcactttcctttttccCTTGAGCGCGCTAGAAA AAATGATAAGCTCGCGTTTTCGCGCGgtcgaataaagatgaggcggcaat cttgcactgagggtgctacttagtttccgccctattttgcgcccacgata aaatggtccaaacacggggctattccaaatgataaactatgtcgttatgt aagtgtttattttctgagagatacaaatagtatattgaatattattaact tatttatttatttatttatttatttaagtatttttgagcgcaaatttaaa tataggTTGAATATTacgtttattcctcaaaccccccggaaaagtttttt tgctgacttagctattttacaaatctcaaaaaagaactcccataggaatt tcAATACCTTaccccgattggttaattttggaACGGCTTGAAGAAAGTAT AATGGCAGATGATtggataattttaaaagtttctgaggaaatgtgtgtaa tttatcgatgttgatggcttgttgattcttaaaGAAAGTAGAtgacaggt atagctttttctaatcctggaatatcgaggttccagctacactgtcaatg ggaatcaaaactataaagtgcacttaccaacatcaatttgtcagatctaa caaaattaataaccgcactatcatcattgacaataaaacaaaccaatttT CTGTCAacagccttgtaaacattccaacaacttccagcgaaatgatctat cacagtttagtctaccatttttagtgcggtccgaggattgagctgagaac gcctgcgcgggtgaaaaacttcaatctgtcaatcattttctcaagcaaag agttcgcggagcgattctagctttaccaTAGTGCCgtggatcatcaatgg atagtattcaatcatcattatccctttattttcattcctagaacttttgc aaaaaaaaaatgaaaaaaaaaatagaaaagttgtattttttactgctcta ttcacatactgaatttgaaaaatcttctatgtggcgtttttttgcagatg ctaatcaaaaatagtgtgacattgtaaaaaatgctcaaaatcaacttttt ggaaTAACTCTTCATATTTTTTGAGTCAGCCATAGAGATTTCACAGGGTA ATAGACCTCAACGTGGagatatgattaaaaaaaaaattttgttatttgag TCAAAATTGTGGCTGCAGATAAaaaattctagtttttttttaaagtgtaa GCCACACGATATTGAAAAGTGATCTCTGAATGGGACCTTCTAGACTTGAA AGAAGAAAGgctgaattttccaaaaagtgttaAATGNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNAAGCCACAAaatttcgttctttttgcaaCAGGTAGATAAATTATT CAGCTTAACCATGGATGTATTTTGACATGTAAGCCACATGATGGCCTCAT TCTATGAGTAAAATAGTGGATGACataaaaaatgtcacaaaacaggggtt aatttttgattagcatctgcaaacttcaaaaaactgatttttgtcccacc tttgcaggactttggcttaagtgcttgcgtgcagcataagGTACAAAGTC CAAGCATgcatttcccgtaatttttgtatgaagagttaggtctatactgt ttgTACGGTACTTAGGCACTCAGCCGCCCATACTCTagaaagctctaaca gagtgaaaaactcatcaaacataatcgtaatcgatcgaaatcgaagatta atcgaatgtaattgacaatcaatcgaacatagtcaactatcaatgaACCA Atttaaccttactcgaacgcaatcaaatattacccagtgttaaaagttct tccgtctcagacggatttccgtctcagagAAGTATATAGAGAgacttttc cgtctcaaaatcctgcataattcaccaaaagttcaagaatatgtgctaat ttgctgtgtaaaatccattttccgtctcagacgaaaatcttgctttgacc actgattACCCAGGAATCTGCCGtgcgattgagattcgattacaaTCTAC AATCCAATCGCAATTATTCTATCGCGTTCGATTAtgttcaattggttcga ttgcaatttttgtttgaagttgttcaattgacaccgtctggatattTGAT GTGATTAAATTGTGTATTTAGATTGTTAAAATTACTtcttcaaattatgt acttttaaaatgctttaaaaatacatttggttGTGATTATGGGATGGTAA AAGTTTAATTGATAAACTTGattgaagtatcaaaacaaatttgttaacAC CCAGATGGGAGTTAATTTTTTAcaacaaaacatcaaatcaaactttgaaa aagctTAAACCAAAGGTGCTACACTCCCGAGGGTAAACTAGTCAATTTCA TAGAGGTAATGAGAAATGTACAGACAtcgaaaaaatataattcacAATGG CGTCtgaaattaaaactgaaaaaagatgAGTATGATTACCATTGTACAGA AATACCTCCTTAGCCCCTGTTCCGATTTTTCAGGTTATAATTTTTGGATT TGTGAGAAGACATATATTATTTTAAACCCCATCTGGGTGTTCctaaaggg ctacttagactacacaatatattgacaaaCAATATTTCACAATATAGTTT TCAGATCGTAATGTACGGAGTAAAGAACAGGTGctttattataaaaagaa atttatattgttggaatattgcaaattgaGATAACTTGCAGATACCTTAT CAATATATTTCTAacactcagcaatatatcatcaatatattgcctgacaa tatattgtgtagtgtatgtagcccttaaaaGGTAGGGTACCCCAATGGGG CCCTTAATTGAGCTACTTATTGGGGTACCCCTTTTGCCCTAAATTTTACA AACTGCTGATGCTCGAGTTCATGATAAAATGATACTAAAACCCCTGTTTA TTAAaacaattggcaaaaatcaaGTAATTTTTTGAACTGTCATCTctgtt tcaaaaagattcactactcaaaaaagcaaaataaaataaaaaattcaaaa ttatgtCTGAAAGTATTTTAATTCCATACTGCTATACTATAACTGTAATT GATATTTATTAGAAGCTAAATTCTAATTATTAGCTGTTAAAAAGTGCTGT AATTTTTTGCAGGATGAATGCTCTGGCATTGTGTTGTCTATTATCAGTTG CTTTTGCAAAACCATCACAAAATGGTTTATACAACCCTTTGTTTCAAGAT ATCATTGATGAAGTCAATAGTAAACAAACAACATGGAAAGCCGGTCATAA TTTTGATGCCAATGTTGACCATGCTTATTTGAAGCATTTATGTGGAACTT TTCTTGATGACCCCATCAGAGAATCATTGCCAGGTACACATGATTATCAC TTGATCAatatttatcttttcaatatttatctTATACAagttttttcttt gcttttacTTTGGAAGTTAAATAATATACTTTGAGTGTTGGATGACACAT GTGACATTGACATGAGTTCTATAAGACAAGAATTGATTGAGTTGATACGG TCTGAACACTCTTATATTTCATTAGTGTCGTTTTTATTCTTCACTTTGGG CATTTTAAGAGAAGTCTCTAGGAACACTCTTCAGATAAAACATCTAAATA TATTTTAGAGAATAGGGGATAATTATTCTTTCATGATATTTTATTTTAGA GAAACAAGATTTTGAAACAGTTGAGCTGCCAGATGAATTTGACTCTCGTA CAAAATGGGGAGAGATTTGTCCAAGCACAAAAGAAGTCCGTGACCAAGGA AACTGTGGCAGCTGCTGGGTATGTTGTTCaaagaatttaaaacaaaatct aaAGAGCACTGAAGGGATTATGCCATTGGCCGAAAAAGGCTTTCACTATT TATGCTTCGTCATATGGGAAGTTGTGTTTGAGGGCGTTGCAGTTGTGTCT ATCGCTTTTGCCTAACCTCACAATTTATTCTAAAGATCTTAGGATTAGGA GTGtcttgtattttttataacAGAGATGGCTAACTAATTCATTCCTTGAG CTGATTTTTTGTACCTagcaaaattttatatattttttcacaaCAGGCAT TTGGTGCTGTAGAAGCTTTTACTGATCGTATCTGTATTGCATCGAACGGT GAAAAGAAACCTCACATCTCTGCTGAAGATCTTCTTTCTTGTTGTGGTTT CTGGTGTGGAATGGGTTGCAATGGAGGTTTCCTCGGAGGTGCCtggaact ttttcaaaagaactgGATGTGTTACCGGTGGACAATACAGTACCAAGGAA GGCTGTAGACCATACAGCATCCCAGCCTGTGAACACCACACTACTGGACA CTTGAAACCATGCTCTGGAGATTCTCATACaccaagctgtgagaaagaat GCAGACAAGGTTTGATCTATTTTCATCATGTGGAAAGATTATTTATCTNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATATT ATTTAATAATCCAAATTATATTCTAGGCTACAATGTCAGCTACACTGAAG ACAGACATTACGTTAAAACCAAATACACTGTTTCAAGCGACCAAACTAAA ATCATGACAGACATTATGACCAATGGACCAGTTGAAGGAGCTTTCACTGT CTATGCTGACTTCCCCAACTACAAATCAGGTTTGAATTTCATGGAAGATT TGAAATATGTAGAGCTGGCTCACTTATACTGGATATACTCTTAAAGCGGT AAAAGATGTAAATTACCcatattttaaaagttctccTGTTTGATTTGGAC AGTATTTCAAGTAGAGTTGTCtgatgaaaaattaataaataaataatgta TCTTTAACTTTGTGTGATCAGTGTTAGTGATGCCaacaaaataacatttt tcttttttgttataGGTGTTTATCAACACACCACTGGATCACAACTTGGT GGTCATGCCATCAAAATCCTTGGATGGGGTACTGAGAGCGGAACACCTTA CTGGTAAGGAAAATCTATATCGAAATTGTGACCttaataataaatttttt tttgctgcaAATAGTTTCAGACAGTTTCAATAAAACTTACATTAGAAAAG AACCCAACATTTATCTCCTAAAATCCATGTAAGTATCCGGATTTCAATTT TGCAAGCAGGTATTTGCAACTAACTCATTTTTTCCTGCCTTTCATCAGTA TTACAAGACTTAGATAGCCGAAAGTAATATTTTAATCTATCATTTATGTA GGTTGGTTGCCAACTCATGGAATCCAGACTGGGGAAACAAAGGTTCGTTT TCTGCtcagaaagaatttttttttctatctgaGGAAACTGGGTTCGAGAT TACAGGTTAATGTCTGACAttcttaaagattttaaaaatcttgatgttat ttccttgtaaattcattcCCAGGCCCTTCGGAAGCCAACTGCACATTCaa gggttgataggtgtattaCTTTGATAGCGTATGAAAAGTGAGAAGGTTGG AAAtagtttatatattatattggcTTCTTTTTTTAAAGGGTTTTTCAAGA TTAAACGTGGAGGAAATGAATGTGGCATCGAATCCTCAATCACTGCTGGA ATCCCTGcataaatttaaaatgaaaatgatttgtttttAANNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNCACAACAGGCATTTGGTGCTGTAGA AGCTTTTACTGATCGTATCTGTATTGCATCAAACGGTGAAAAGAAACCTC ACATCTCTGCTGAAGATCTTCTTTCTTGTTGTGGTTTCTGGTGTGGAATG GGTTGCAATGGAGGTTTCCTCGGAGGTGCCtggaactttttcaaaagaac tgGATGTGTTACCGGTGGACAATACAGTACCAAGGAAGGCTGTAGACCAT ACAGCATCCCAGCCTGTGAACACCACACTACTGGACACTTGAAACCATGC TCTGGAGATTCTCATACaccaagctgtgagaaagaatGCAGACAAGGTTT GATCTATTTTCATCATGTGGAAAGGTTATTTATCTAAATTTGGTGTAcaa taaacatgaaatttctaAAACCTAATAACaaatatgaaaagaaaaagtta ttgAAGTTAATATCAATAATCATAATGATTTATATTATTTAATAATCCAA ATTATGTTCTAGGCTACAATGTCAGCTACACTGAAGACAGACATTACGTT AAAACCAAATACACTGTTTCAAGCGACCAAACCAAAATCATGACAGACAT TATGACCAATGGACCAGTTGAAGGAGCTTTCACTGTCTATGCTGACTTCC CCAACTACAAATCAGGTTTGAATTTCATGGAAGATTTGAAATATGTAGAG CTGGCTCACTTATACTGGATATACTCTTAAAGCGGTAAAAGATGTAAATT ACCcatattttaaaagttctccTGTTTGATTTGGACAGTATTTCAAGTAG AGTTGTCtgatgaaaaattaataaataaataatgtaTCTTTAACTTTGTG TGATCAGTGTTAGTGATGCCaacaaaataacatttttcttttttgttata GGTGTTTATCAACACACCACTGGATCACAACTTGGTGGTCATGCCATCAA AATCCTTGGATGGGGTACTGAGAGCGGAACACCTTACTGGTAAGGAAAAT CTATATCGAAATTGTGACCttaataataaatttttttttgctgcaAATAG TTTCAGACAGTTTCAATAAAACTTACATTAGAAAAGAACCCAACATTTAT CTCCTAAAATCCATGTAAGTATCCGGATTTCAATTTTGCAAGCAGGTATT TGCAACTAACTCATTTTTTCCTGCCTTTCATCAGTATTACAAGACTTAGA TAGCCGAAAGTAATATTTTAATCTATCATTTATGTAGGTTGGTTGCCAAC TCATGGAATCCAGACTGGGGAAACAAAGGTTCGTTTTCTGCtcagaaaga atttttttttctatctgaGGAAACTGGGTTCGAGATTACAGGTTAATGTC TGACAttcttaaagattttaaaaatcttgatgttatttccttgtaaattc attcCCAGGCCCTTCGGAAGCCAACTGCACATTCaagggttgataggtgt attaCTTTGATAGCGTATGAAAAGTGAGAAGGTTGGAAAtagtttatata ttatattggcTTCTTTTTTTAAAGGGTTTTTCAAGATTAAACGTGGAGGA AATGAATGTGGCATCGAATCCTCAATCACTGCTGGAATCCCTGcataaat ttaaaatgaaaatgatttgtttttAANNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTACTTTGATAGCG TATGAAAAGTGAGAAGGTTGGAAAtagtttatatattatattggcTTCTT TTTTTAAAGGGTTTTTCAAGATTAAACGTGGAGGAAATGAATGTGGCATT GAATCCTCAATCACTGCTGGAATCCCTGcataaatttaaaatgaaaatga tttgtttttA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009642XLOC_009642Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017234-exon-sc0000261-1491911889:256312..256623TCONS_00017234-exon-sc0000261-1491911889:256312..256623Clytia hemisphaericaexon
TCONS_00017234-exon-sc0000261-1510915933:256312..256623TCONS_00017234-exon-sc0000261-1510915933:256312..256623Clytia hemisphaericaexon
TCONS_00017234-exon-sc0000261-1575043694:256312..256623TCONS_00017234-exon-sc0000261-1575043694:256312..256623Clytia hemisphaericaexon
TCONS_00017234-exon-sc0000261-1491911889:266674..266894TCONS_00017234-exon-sc0000261-1491911889:266674..266894Clytia hemisphaericaexon
TCONS_00017234-exon-sc0000261-1510915933:266674..266894TCONS_00017234-exon-sc0000261-1510915933:266674..266894Clytia hemisphaericaexon
TCONS_00017234-exon-sc0000261-1575043694:266674..266894TCONS_00017234-exon-sc0000261-1575043694:266674..266894Clytia hemisphaericaexon
TCONS_00017234-exon-sc0000261-1491911889:267211..267329TCONS_00017234-exon-sc0000261-1491911889:267211..267329Clytia hemisphaericaexon
TCONS_00017234-exon-sc0000261-1510915933:267211..267329TCONS_00017234-exon-sc0000261-1510915933:267211..267329Clytia hemisphaericaexon
TCONS_00017234-exon-sc0000261-1575043694:267211..267329TCONS_00017234-exon-sc0000261-1575043694:267211..267329Clytia hemisphaericaexon
TCONS_00017234-exon-sc0000261-1491911889:271195..271507TCONS_00017234-exon-sc0000261-1491911889:271195..271507Clytia hemisphaericaexon
TCONS_00017234-exon-sc0000261-1510915933:271195..271507TCONS_00017234-exon-sc0000261-1510915933:271195..271507Clytia hemisphaericaexon
TCONS_00017234-exon-sc0000261-1575043694:271195..271507TCONS_00017234-exon-sc0000261-1575043694:271195..271507Clytia hemisphaericaexon
TCONS_00017234-exon-sc0000261-1491911889:271674..271826TCONS_00017234-exon-sc0000261-1491911889:271674..271826Clytia hemisphaericaexon
TCONS_00017234-exon-sc0000261-1510915933:271674..271826TCONS_00017234-exon-sc0000261-1510915933:271674..271826Clytia hemisphaericaexon
TCONS_00017234-exon-sc0000261-1575043694:271674..271826TCONS_00017234-exon-sc0000261-1575043694:271674..271826Clytia hemisphaericaexon
TCONS_00017234-exon-sc0000261-1491911889:272063..272150TCONS_00017234-exon-sc0000261-1491911889:272063..272150Clytia hemisphaericaexon
TCONS_00017234-exon-sc0000261-1510915933:272063..272150TCONS_00017234-exon-sc0000261-1510915933:272063..272150Clytia hemisphaericaexon
TCONS_00017234-exon-sc0000261-1575043694:272063..272150TCONS_00017234-exon-sc0000261-1575043694:272063..272150Clytia hemisphaericaexon
TCONS_00017234-exon-sc0000261-1491911889:272399..272439TCONS_00017234-exon-sc0000261-1491911889:272399..272439Clytia hemisphaericaexon
TCONS_00017234-exon-sc0000261-1510915933:272399..272439TCONS_00017234-exon-sc0000261-1510915933:272399..272439Clytia hemisphaericaexon
TCONS_00017234-exon-sc0000261-1575043694:272399..272439TCONS_00017234-exon-sc0000261-1575043694:272399..272439Clytia hemisphaericaexon
TCONS_00017234-exon-sc0000261-1491911889:274721..274821TCONS_00017234-exon-sc0000261-1491911889:274721..274821Clytia hemisphaericaexon
TCONS_00017234-exon-sc0000261-1510915933:274721..274821TCONS_00017234-exon-sc0000261-1510915933:274721..274821Clytia hemisphaericaexon
TCONS_00017234-exon-sc0000261-1575043694:274721..274821TCONS_00017234-exon-sc0000261-1575043694:274721..274821Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000261supercontigsc0000261:256312..274821 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.60953e-08 0 2.07593e-05 1.31002e-08 0 0 0 0 3.78076e-07 2.16043e-09 0 2.40342e-09 5.10268e-07 0 0.604462 0 1.04282e-09 0 0 2.00622 0 0 0 2.80235e-08 0 0.00344145 2.33218e-09 0 0 5.57139e-10
Blast
BLAST of TCONS_00017234 vs. Swiss-Prot (Human)
Match: CATB (Cathepsin B OS=Homo sapiens GN=CTSB PE=1 SV=3)

HSP 1 Score: 379.022 bits (972), Expect = 2.428e-128
Identity = 190/331 (57.40%), Postives = 239/331 (72.21%), Query Frame = 2
Query:  326 ALCCLLSVAFAKPSQNGLYNPLFQDIIDEVNSKQTTWKAGHNFDANVDHAYLKHLCGTFLDDPIRESLPEKQDF-ETVELPDEFDSRTKWGEICPSTKEVRDQGNCGSCWAFGAVEAFTDRICIASNGEKKPHISAEDLLSCCGFWCXXXXXXXXXXXAWNFFKRTGCVTGGQYSTKEGCRPYSIPACEHHTTGHLKPCSGDSHTPSCEKECRQGYNVSYTEDRHYVKTKYTVSSDQTKIMTDIMTNGPVEGAFTVYADFPNYKSGVYQHTTGSQLGGHAIKILGWGTESGTPYWLVANSWNPDWGNKGFFKIKRGGNECGIESSITAGIP 1315
            +LCCLL +A A+   +  ++PL  ++++ VN + TTW+AGHNF  NVD +YLK LCGTFL  P     P++  F E ++LP  FD+R +W + CP+ KE+RDQG+CGSCWAFGAVEA +DRICI +N      +SAEDLL+CCG  CG GCNGG+   AWNF+ R G V+GG Y +  GCRPYSIP CEHH  G   PC+G+  TP C K C  GY+ +Y +D+HY    Y+VS+ +  IM +I  NGPVEGAF+VY+DF  YKSGVYQH TG  +GGHAI+ILGWG E+GTPYWLVANSWN DWG+ GFFKI RG + CGIES + AGIP
Sbjct:    7 SLCCLLVLANARSRPS--FHPLSDELVNYVNKRNTTWQAGHNF-YNVDMSYLKRLCGTFLGGP---KPPQRVMFTEDLKLPASFDAREQWPQ-CPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIP 330          
The following BLAST results are available for this feature:
BLAST of TCONS_00017234 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CATB2.428e-12857.40Cathepsin B OS=Homo sapiens GN=CTSB PE=1 SV=3[more]
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