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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017232 ID=TCONS_00017232|Name=TCONS_00017232|organism=Clytia hemisphaerica|type=transcript|length=1347bp
GCCGCTTCTGCGACTACCATTATGATTCACCACGTGGTTTGATTTTCGCG
GGCTTTTTTAGAAGCTTGGTAACGAGTTGTCATgtgattttcatcaaaac
acacCGCTTATCATGTGATAATTCTCTCAACCTAACCATTTCAGCTATTG
AAACATAATTGTACCTCAGAGGCTTGGGTTCaaatactttcactttcatt
tttgctTTCCCCACCTCAATTTTCGCATCGATAGCAGGCAATCAGTAGTC
ATCAAAGAAGCATTCTTACTTATTACATAAATTCAACTGCTGTTTAGACA
AAGACTTGTCAGGATGAATGCTCTGGCATTGTGTTGTCTATTATCAGTTG
CTTTTGCAAAACCATCACAAAATGGTTTATACAACCCTTTGTTTCAAGAT
ATCATTGATGAAGTCAATAGTAAACAAACAACATGGAAAGCCGGTCATAA
TTTTGATGCCAATGTTGACCATGCTTATTTGAAGCATTTATGTGGAACTT
TTCTTGATGACCCCATCAGAGAATCATTGCCAGAGAAACAAGATTTTGAA
ACAGTTGAGCTGCCAGATGAATTTGACTCTCGTACAAAATGGGGAGAGAT
TTGTCCAAGCACAAAAGAAGTCCGTGACCAAGGAAACTGTGGCAGCTGCT
GGGCATTTGGTGCTGTAGAAGCTTTTACTGATCGTATCTGTATTGCATCA
AACGGTGAAAAGAAACCTCACATCTCTGCTGAAGATCTTCTTTCTTGTTG
TGGTTTCTGGTGTGGAATGGGTTGCAATGGAGGTTTCCTCGGAGGTGCCt
ggaactttttcaaaagaactgGATGTGTTACCGGTGGACAATACAGTACC
AAGGAAGGCTGTAGACCATACAGCATCCCAGCCTGTGAACACCACACTAC
TGGACACTTGAAACCATGCTCTGGAGATTCTCATACaccaagctgtgaga
aagaatGCAGACAAGGCTACAATGTCAGCTACACTGAAGACAGACATTAC
GTTAAAACCAAATACACTGTTTCAAGCGACCAAACCAAAATCATGACAGA
CATTATGACCAATGGACCAGTTGAAGGAGCTTTCACTGTCTATGCTGACT
TCCCCAACTACAAATCAGGTGTTTATCAACACACCACTGGATCACAACTT
GGTGGTCATGCCATCAAAATCCTTGGATGGGGTACTGAGAGCGGAACACC
TTACTGGTTGGTTGCCAACTCATGGAATCCAGACTGGGGAAACAAAGGGT
TTTTCAAGATTAAACGTGGAGGAAATGAATGTGGCATCGAATCCTCAATC
ACTGCTGGAATCCCTGcataaatttaaaatgaaaatgatttgttttt Run BLAST on NCBI transcript from alignment at sc0000261:256312..272785+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017232 ID=TCONS_00017232|Name=TCONS_00017232|organism=Clytia hemisphaerica|type=transcript|length=16474bp|location=Sequence derived from alignment at sc0000261:256312..272785+ (Clytia hemisphaerica)
GCCGCTTCTGCGACTACCATTATGATTCACCACGTGGTTTGATTTTCGCG
GGCTTTTTTAGAAGCTTGGTAACGAGTTGTCATgtgattttcatcaaaac
acacCGCTTATCATGTGATAATTCTCTCAACCTAACCATTTCAGCTATTG
AAACATAATTGTACCTCAGAGGCTTGGGTTCaaatactttcactttcatt
tttgctTTCCCCACCTCAATTTTCGCATCGATAGCAGGCAATCAGTAGTC
ATCAAAGAAGCATTCTTACTTATTACATAAATTCAACTGCTGTTTAGACA
AAGACTTGTCAGGTAAagcttttcattaaatttgatgttatttaagattt
tttcatttccataagCCCTCCTAGGCACACAAGcttggacattttctttt
ttgatgttgaTGTTTCTATACATTTTGgacatttccaaatgaattatttt
tgtgtcttctcacaaatccaaaaatataATTAGAAGATTCAGGATAGGGG
GGGTGCTTCAAAAAGGTACGGTCAACAGCTCTAACCTGGGACTATCTggc
aaaacatgggacggcaattcggggCGGCCACCATTATTTCACCACCAACG
ACcacaaacctccaaagtcaatTAATTAACACAACCGCAAATCGTAGATA
GCATATAATGTGAATACACTACACTCACCAGGTTTGCTTTCATACTGTAA
AAGGAACAAATATTTGGGACGAGTAGAAATGCGTGAATGTGATCGCGCGC
ATTCGcgcacaagtgttacgcgtaagccaaatcgcgtattacgaacaacc
tctaaattgccgagtacaggagaaaaaatcaaaattcaaaatggcggcca
agcccacgctgataactatcaaaaatctttgtttttcaatcagctaaatt
gcagctcaataaatcaatgaaataatttgaaataaaaagtaaacaaacct
tgaacctttcatgaatccaaataaataaaagtattcatctaaagtgaaga
ttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNtgccaactaaaaatttctctgcggggtcactggc
aaggagttacgacttcagacttaagattccaattcttgtgtaggctgcaa
ctacactgccaattgatctgtattacaaatacttccaaatgggtccataa
gttaagaaaatgaaattatcatctagcacgggggttttgtttttaaaaac
aaacttcaaaataaaattgttaatgaacttgttacttaaaaaatatcact
tacttacataatttatttatggtataacacccctttcttaaataaatggc
ctcttaaagtcttttatgtttgccgcaagaagggagaaaaatttaatttg
acccccggttttttctctctttttctaacTACCGTAGGTCGGGGAAACTT
CGGAATGAAGGAAACTTCGGACTAAAATCTTTAACAAGTGATTACTTCGC
GAGGATGTAACATTTTATcgtacttttttctttcacagtTCAGAAATGAA
GCACACTCGACGATACATATCAAGCGACGGAAAGCCgaaagaaaaacgaa
gaagaaattgaagaaaaccaCGATATTTTACCATCTTCCATTGTAAAGAG
ATTTGTTGGATATCTAAAGCGGCAACCTCATAATTTTATTTACGTGATGA
AAAGAGGAGACATTGAATGTAACGTTAAAAGTTATTTGGGCTAAAAATAT
GCATTCCTTAATCTTCAATAGCTCTTCAAAGTTGCTCTATAAATTCGCCG
AGAAAGTCGCTGCGAGAATAGCTTTACCGTCAGCCGAGAAAGATCTTCTT
TAAACGAATCCCAAGAGAAACATAATGTGATTTCGAAGCAATATTATAAG
AACTTTGTTCTGACGTCACCAGACATTGATGATAAACGTGCAGATAATTT
GGTTCTTTATTAGTATAAAGTAAGGTAAagggaaaaccctttttttatta
gaagtcGATGATGGTGGATTTTCTTCATTAGAACATTAGAGTATGTCAAA
TAATTCTTGGAAAAAGCTTGCTTGTAAGTCGCTATCTGATCCACATAATA
CGTTGGATGCAAATTCTAATGATTTAAATCTAAGATTATCATAACTAATT
AAAGAGCCTCCGGTACACTTGAAGACGCATTTGTCATACCCTTTCCATGG
TGGTATGACATACAGTAGTGCATGtattttaggcgtacaaactttcgcga
gcagaaactttcgcgaatcgttggatataaatgaaaacttttgaatgaaa
attgctttaaaatggaaaaatatacCTTAAATCCGATAAAGACTGTTGCT
CTTCGACTATAAAAGGTATTAAACTATAAAATTatgccaaaaatttcaaa
tttgacgATTCGTGAAAGTTTGTTGTAAACTTTGCGCTATTTCGGCCTCG
CAAAACTTTGTGCTCGTTTGTACGCTTAAAGTGATCAGTGATTTGGCCAG
ATCCAGGTGCCTAATTTCTCCAAAATAAATATAATCTTTTTATTGCGGCT
TTGACGTGAAAACTACCCCTAAGTTATTATCATTCAGCCCCTTAACGATA
GCTAAAATAGGTTAAACACTTTTATCATTTCGGTAGTCATAACAGGGGTG
TTTCCACTTAAACATTTTGTATTGAATGGTTGTGATAGAACCTGTTTACC
TGTTCCTTCTTTGCCTAATGGTAATGAATGTGTCCCCGGTGAAAAAAATA
CTGCAAATTGATAATCGAAATATCATTAGCAAAAAGGCTGCTTTGGTGAT
ATGACAGCCGATGGTTCTTACAGCTGGCTTACAAATCATTTTGACTCAAG
AAACCTCTGTATCTATCACTATGTTACTGGAGGGTTATAGGTGGTTTTAG
ACCATatcgaacttatcagaggaaccagatatttgtaattgtaaattcat
tgtcttttaacgagcgttgcactccttcgtaTGCTTCCGacatacttgct
ctattgtcttaaatgcGCAAGTGGGTGTATATAGTCGATATATTTTGGCT
GTATTAACAAACTAAATTTCGTAATCGTAACATTTAAcctttaactcaaa
tcaaaagaCGATAAGTTCGAAAATTTCAAACCCGTCAAATGGTATGTgct
tattacacccctgtgtcacagatcctccagccccactggaaaatttggca
aaaataataatggaaatttttatcccctctgttggaaaaaaatccaccgG
GGCCActgtgagataggggtgtcTTATTTAAAATAAGGTAAGACATATAC
AGCGGTAATGAAGCAAAATTACGTACAATATTATGTTTCTAGTCTACCAT
TGAAGCTCTTACTTACTCGGTaggtattttgtatttatttcttttcatct
CTTTTTAATCTAATCTATAAAGCCTGCATCGACGAACTTATGAACCGCCC
GTAGTCCCACTGGTAACAAAACATTTAATTAGTATTTAATTCGTGATTTA
CAGTACGCATTTCGTTGCAAGCCTTGTGTAGTATATTGGGTTACTTTTAA
CCACGATCTTGATCGCGCTAACTTCCTCGCACGTCCACCTGGTCCATCGT
CGAACAATTatctaaatcaaaattgtaGTCTACTGTTGAAtagaaagtca
attttctatCTCTTGATAAATTGGAAACCTCATCAAAGCCTGGGATTTAT
TATTCCACTGGCTGTGTAGAAAAAAGCAGTGGCCTCCTAGTATAGTCAAG
TTGAATATGAAAGTCAACAGTGACTTAAGTTATTTAAAGCGATATTTTTG
GCAAACATTAAATTTCACTTGACTTGTATAAAAAACACCCATTTGTCCAC
AGCGATGGCTTTATGCTGCTTTGATTCCGATTTCACTGAAACTACTAAAG
TGCATGTATACGTAATACGGGAATGTATACAGGAATCAAAACTAAATTCC
CATATtgcgaaaaataaaacttgaaacagAACATGAACATttagctctct
cgcttatatCTCTATAACACCCATGTTTCACACAGCCCCGGTGGATCTTC
ACTCAAAACAACACATAAACAAGACGAcatgaagtcgaaaatttcgccta
gaatttgaaccgcatgggaaaaagaagaagtagagattaaagctaatctg
aaatctactttacatcgagccttgatgaaacaattttacaagaacaagga
ggcttaaaatcgctaaaaaaataagaccaatttaagaacaattgctgttt
aatttttaagaactcttacaaagtatatgcttataaaaaataaatatgct
cacattgtgcgccgtcccttgtttactctgtaagaactaattaccgaaag
atatatcaccgtctatcatgagttattgagttaattcttataaagtatat
gcttacaagaaaagtaaaaatactCATACTttacgccatcccttgtttac
tttgtaagaactaattaccgaacgGTAtctcaccgtctatcaagagttat
tgagttgattcttataaagtatatgcttacaagaaaagtaaaaatactCA
TACTttacgccatcccttgtttactttgtaagaactaattaccgaaagat
atatcaccgtctatcatgagttattgagttgattcttataaagtatatgc
ttataagaaaaataaatatgctcatattatttgctgtcccttgtttactt
tgtaagaactaattaccgaaaggtatatcaccgtctatcatgagttattg
agttgattcttataaagtatatgcttataagaaaaataaatatgctcata
ttgttTGCTGTCCCTtgtttactttgtaagaactaattatcgaaaggtat
atcaccgtctatcatgagttattgagttgattcttataaagtatatgctt
ataagaaaaaaaataaaaaaacaatcagTTATATGCTTAAATTTGTGGAA
TTAATATTCGAGCAAAAAAAACGCGACTTATGATTATCTCCATAGTATAT
ACTGAACCAACTAACAAGAGAACGCCCGGGTCAAACGCCAACGCCATAAT
CTTCGCCCCAAAAAAATTCTCCcccgccgccgccgcagaaaggctatcgt
aatactttcgctaagcgaaattaaaaatagggttgaaatttttatcaaaa
tttgttgGGGATCGTTTTGAAGtgcttttttcaatttcctaatgaggttg
aaattgaaaagatgTTTCCCCACCGGGTGCGAAATCTCGGTCCAATTTTT
CAAGTGGAGCGGGATTCGACACAAGGGTGTTTTAAAAAGACCGTTGttac
tttatttgaaagtcgGAAAAGTTTATGGGCTTCCGAAAAAAATAATACTC
AGAACTTAGCATCCAAAAGTCCcgcgaaaaataagaaaaatatctaaTGA
AATATAACGATATGATAGTATCATAAGGAAACGAGACAGTCTAATtgaaa
aagttcttataaaacgtGTTTGTTTCACCAATTCACTCTGAGGAAGACCC
TCTCATCATGTGTTTAGCGTCCATAAAAACTAATGATTGGTTGATTAGTT
TTATTATTCACACTTCCATCGCACGCCCAGAAaattaatgaccaattaag
cgcAATTCGTATCTTTCTGTCGTTAATTTCTCGGCTCACACGAATTTGTC
TCTtggtatttttcaacaaatggcacttcaaattcaatgtttttgttttg
aaatagcGCAGTATCCAGTCATGATGGTAGATCGTTGGAGTGACGGCAAA
TCATTCCGAAGTTTAACATTTTAAGAAGTTGACCTTTCTGAAATTGAGAT
GGTGTTTCTTTCATAATGACCTGGCTGATTTACTTGTaacgattgttttc
tgaaagacAATAACACAAATGTTATGTACAGTAAGTTTGGTTGATCTTTT
TTTCATATTCCaggagaaataaagaaaaaacttgaaaatctgtCCGAAGT
TTCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNttc
ccgcgtgttagtgtagacacaactttaatctggggaaatgaagcgttttc
attggtctaaaatcacggatgatcacgtgaccagaatttttatccaggga
aatgccgtggcggcaatgttttactttagtgagattgaccattttgttgt
tttgatttgagcgggcgaaatttctgtacaaaccaaaatatggcttcgtt
ggaataccggttaaAACACTTGTGAAGCAAGCAAGCATCCAAACACAGAC
AGTCTGTGTCACAGATATCAAAAGAAGTCTGTTCTTCCGCAGAAAATTGT
GAGATCTGCTATCGACACTCTGTCACTTTGACATGTCAATCAATCGCACA
CGCTGGAAAAAAGTctctagagaaaaacaacacaaaacaaaaaatgtttg
ataTTTGCTatttccagacggtgtcaatcgaacgaatcgaatgccgaatc
aattgaacgcaattgaaaaCAATCTAATAATTGCAATacgattgtcaaac
gcaatcaaatcgcaatcgaatattacccaggatttgccgttcgattgctt
caatTATGTTTGATTGTATTCAATTACGTTCAATATtacgttcaattgat
tcaattgtattagattttattcgctttgtcAGGCTAGCTCtgaagctcta
aaacagcatctaataacttgaaaaccagaatatgattcttcaatcaGTGA
Gggtggaacttcgatttttgaggattacgattttactagttttttagcga
tttttgcctcgctaacccaaatctcgcaacctctttaccttaaggaagat
cgaaattcgaacgcatagcagaaatttgttcatcttcacaggatcgattc
tcaacaacaaaatacatcttttggtctttgggtttgtttctgacattttt
ccttcaaagaatatcgatcactttcctttttccCTTGAGCGCGCTAGAAA
AAATGATAAGCTCGCGTTTTCGCGCGgtcgaataaagatgaggcggcaat
cttgcactgagggtgctacttagtttccgccctattttgcgcccacgata
aaatggtccaaacacggggctattccaaatgataaactatgtcgttatgt
aagtgtttattttctgagagatacaaatagtatattgaatattattaact
tatttatttatttatttatttatttaagtatttttgagcgcaaatttaaa
tataggTTGAATATTacgtttattcctcaaaccccccggaaaagtttttt
tgctgacttagctattttacaaatctcaaaaaagaactcccataggaatt
tcAATACCTTaccccgattggttaattttggaACGGCTTGAAGAAAGTAT
AATGGCAGATGATtggataattttaaaagtttctgaggaaatgtgtgtaa
tttatcgatgttgatggcttgttgattcttaaaGAAAGTAGAtgacaggt
atagctttttctaatcctggaatatcgaggttccagctacactgtcaatg
ggaatcaaaactataaagtgcacttaccaacatcaatttgtcagatctaa
caaaattaataaccgcactatcatcattgacaataaaacaaaccaatttT
CTGTCAacagccttgtaaacattccaacaacttccagcgaaatgatctat
cacagtttagtctaccatttttagtgcggtccgaggattgagctgagaac
gcctgcgcgggtgaaaaacttcaatctgtcaatcattttctcaagcaaag
agttcgcggagcgattctagctttaccaTAGTGCCgtggatcatcaatgg
atagtattcaatcatcattatccctttattttcattcctagaacttttgc
aaaaaaaaaatgaaaaaaaaaatagaaaagttgtattttttactgctcta
ttcacatactgaatttgaaaaatcttctatgtggcgtttttttgcagatg
ctaatcaaaaatagtgtgacattgtaaaaaatgctcaaaatcaacttttt
ggaaTAACTCTTCATATTTTTTGAGTCAGCCATAGAGATTTCACAGGGTA
ATAGACCTCAACGTGGagatatgattaaaaaaaaaattttgttatttgag
TCAAAATTGTGGCTGCAGATAAaaaattctagtttttttttaaagtgtaa
GCCACACGATATTGAAAAGTGATCTCTGAATGGGACCTTCTAGACTTGAA
AGAAGAAAGgctgaattttccaaaaagtgttaAATGNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNAAGCCACAAaatttcgttctttttgcaaCAGGTAGATAAATTATT
CAGCTTAACCATGGATGTATTTTGACATGTAAGCCACATGATGGCCTCAT
TCTATGAGTAAAATAGTGGATGACataaaaaatgtcacaaaacaggggtt
aatttttgattagcatctgcaaacttcaaaaaactgatttttgtcccacc
tttgcaggactttggcttaagtgcttgcgtgcagcataagGTACAAAGTC
CAAGCATgcatttcccgtaatttttgtatgaagagttaggtctatactgt
ttgTACGGTACTTAGGCACTCAGCCGCCCATACTCTagaaagctctaaca
gagtgaaaaactcatcaaacataatcgtaatcgatcgaaatcgaagatta
atcgaatgtaattgacaatcaatcgaacatagtcaactatcaatgaACCA
Atttaaccttactcgaacgcaatcaaatattacccagtgttaaaagttct
tccgtctcagacggatttccgtctcagagAAGTATATAGAGAgacttttc
cgtctcaaaatcctgcataattcaccaaaagttcaagaatatgtgctaat
ttgctgtgtaaaatccattttccgtctcagacgaaaatcttgctttgacc
actgattACCCAGGAATCTGCCGtgcgattgagattcgattacaaTCTAC
AATCCAATCGCAATTATTCTATCGCGTTCGATTAtgttcaattggttcga
ttgcaatttttgtttgaagttgttcaattgacaccgtctggatattTGAT
GTGATTAAATTGTGTATTTAGATTGTTAAAATTACTtcttcaaattatgt
acttttaaaatgctttaaaaatacatttggttGTGATTATGGGATGGTAA
AAGTTTAATTGATAAACTTGattgaagtatcaaaacaaatttgttaacAC
CCAGATGGGAGTTAATTTTTTAcaacaaaacatcaaatcaaactttgaaa
aagctTAAACCAAAGGTGCTACACTCCCGAGGGTAAACTAGTCAATTTCA
TAGAGGTAATGAGAAATGTACAGACAtcgaaaaaatataattcacAATGG
CGTCtgaaattaaaactgaaaaaagatgAGTATGATTACCATTGTACAGA
AATACCTCCTTAGCCCCTGTTCCGATTTTTCAGGTTATAATTTTTGGATT
TGTGAGAAGACATATATTATTTTAAACCCCATCTGGGTGTTCctaaaggg
ctacttagactacacaatatattgacaaaCAATATTTCACAATATAGTTT
TCAGATCGTAATGTACGGAGTAAAGAACAGGTGctttattataaaaagaa
atttatattgttggaatattgcaaattgaGATAACTTGCAGATACCTTAT
CAATATATTTCTAacactcagcaatatatcatcaatatattgcctgacaa
tatattgtgtagtgtatgtagcccttaaaaGGTAGGGTACCCCAATGGGG
CCCTTAATTGAGCTACTTATTGGGGTACCCCTTTTGCCCTAAATTTTACA
AACTGCTGATGCTCGAGTTCATGATAAAATGATACTAAAACCCCTGTTTA
TTAAaacaattggcaaaaatcaaGTAATTTTTTGAACTGTCATCTctgtt
tcaaaaagattcactactcaaaaaagcaaaataaaataaaaaattcaaaa
ttatgtCTGAAAGTATTTTAATTCCATACTGCTATACTATAACTGTAATT
GATATTTATTAGAAGCTAAATTCTAATTATTAGCTGTTAAAAAGTGCTGT
AATTTTTTGCAGGATGAATGCTCTGGCATTGTGTTGTCTATTATCAGTTG
CTTTTGCAAAACCATCACAAAATGGTTTATACAACCCTTTGTTTCAAGAT
ATCATTGATGAAGTCAATAGTAAACAAACAACATGGAAAGCCGGTCATAA
TTTTGATGCCAATGTTGACCATGCTTATTTGAAGCATTTATGTGGAACTT
TTCTTGATGACCCCATCAGAGAATCATTGCCAGGTACACATGATTATCAC
TTGATCAatatttatcttttcaatatttatctTATACAagttttttcttt
gcttttacTTTGGAAGTTAAATAATATACTTTGAGTGTTGGATGACACAT
GTGACATTGACATGAGTTCTATAAGACAAGAATTGATTGAGTTGATACGG
TCTGAACACTCTTATATTTCATTAGTGTCGTTTTTATTCTTCACTTTGGG
CATTTTAAGAGAAGTCTCTAGGAACACTCTTCAGATAAAACATCTAAATA
TATTTTAGAGAATAGGGGATAATTATTCTTTCATGATATTTTATTTTAGA
GAAACAAGATTTTGAAACAGTTGAGCTGCCAGATGAATTTGACTCTCGTA
CAAAATGGGGAGAGATTTGTCCAAGCACAAAAGAAGTCCGTGACCAAGGA
AACTGTGGCAGCTGCTGGGTATGTTGTTCaaagaatttaaaacaaaatct
aaAGAGCACTGAAGGGATTATGCCATTGGCCGAAAAAGGCTTTCACTATT
TATGCTTCGTCATATGGGAAGTTGTGTTTGAGGGCGTTGCAGTTGTGTCT
ATCGCTTTTGCCTAACCTCACAATTTATTCTAAAGATCTTAGGATTAGGA
GTGtcttgtattttttataacAGAGATGGCTAACTAATTCATTCCTTGAG
CTGATTTTTTGTACCTagcaaaattttatatattttttcacaaCAGGCAT
TTGGTGCTGTAGAAGCTTTTACTGATCGTATCTGTATTGCATCGAACGGT
GAAAAGAAACCTCACATCTCTGCTGAAGATCTTCTTTCTTGTTGTGGTTT
CTGGTGTGGAATGGGTTGCAATGGAGGTTTCCTCGGAGGTGCCtggaact
ttttcaaaagaactgGATGTGTTACCGGTGGACAATACAGTACCAAGGAA
GGCTGTAGACCATACAGCATCCCAGCCTGTGAACACCACACTACTGGACA
CTTGAAACCATGCTCTGGAGATTCTCATACaccaagctgtgagaaagaat
GCAGACAAGGTTTGATCTATTTTCATCATGTGGAAAGATTATTTATCTNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATATT
ATTTAATAATCCAAATTATATTCTAGGCTACAATGTCAGCTACACTGAAG
ACAGACATTACGTTAAAACCAAATACACTGTTTCAAGCGACCAAACTAAA
ATCATGACAGACATTATGACCAATGGACCAGTTGAAGGAGCTTTCACTGT
CTATGCTGACTTCCCCAACTACAAATCAGGTTTGAATTTCATGGAAGATT
TGAAATATGTAGAGCTGGCTCACTTATACTGGATATACTCTTAAAGCGGT
AAAAGATGTAAATTACCcatattttaaaagttctccTGTTTGATTTGGAC
AGTATTTCAAGTAGAGTTGTCtgatgaaaaattaataaataaataatgta
TCTTTAACTTTGTGTGATCAGTGTTAGTGATGCCaacaaaataacatttt
tcttttttgttataGGTGTTTATCAACACACCACTGGATCACAACTTGGT
GGTCATGCCATCAAAATCCTTGGATGGGGTACTGAGAGCGGAACACCTTA
CTGGTAAGGAAAATCTATATCGAAATTGTGACCttaataataaatttttt
tttgctgcaAATAGTTTCAGACAGTTTCAATAAAACTTACATTAGAAAAG
AACCCAACATTTATCTCCTAAAATCCATGTAAGTATCCGGATTTCAATTT
TGCAAGCAGGTATTTGCAACTAACTCATTTTTTCCTGCCTTTCATCAGTA
TTACAAGACTTAGATAGCCGAAAGTAATATTTTAATCTATCATTTATGTA
GGTTGGTTGCCAACTCATGGAATCCAGACTGGGGAAACAAAGGTTCGTTT
TCTGCtcagaaagaatttttttttctatctgaGGAAACTGGGTTCGAGAT
TACAGGTTAATGTCTGACAttcttaaagattttaaaaatcttgatgttat
ttccttgtaaattcattcCCAGGCCCTTCGGAAGCCAACTGCACATTCaa
gggttgataggtgtattaCTTTGATAGCGTATGAAAAGTGAGAAGGTTGG
AAAtagtttatatattatattggcTTCTTTTTTTAAAGGGTTTTTCAAGA
TTAAACGTGGAGGAAATGAATGTGGCATCGAATCCTCAATCACTGCTGGA
ATCCCTGcataaatttaaaatgaaaatgatttgtttttAANNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNCACAACAGGCATTTGGTGCTGTAGA
AGCTTTTACTGATCGTATCTGTATTGCATCAAACGGTGAAAAGAAACCTC
ACATCTCTGCTGAAGATCTTCTTTCTTGTTGTGGTTTCTGGTGTGGAATG
GGTTGCAATGGAGGTTTCCTCGGAGGTGCCtggaactttttcaaaagaac
tgGATGTGTTACCGGTGGACAATACAGTACCAAGGAAGGCTGTAGACCAT
ACAGCATCCCAGCCTGTGAACACCACACTACTGGACACTTGAAACCATGC
TCTGGAGATTCTCATACaccaagctgtgagaaagaatGCAGACAAGGTTT
GATCTATTTTCATCATGTGGAAAGGTTATTTATCTAAATTTGGTGTAcaa
taaacatgaaatttctaAAACCTAATAACaaatatgaaaagaaaaagtta
ttgAAGTTAATATCAATAATCATAATGATTTATATTATTTAATAATCCAA
ATTATGTTCTAGGCTACAATGTCAGCTACACTGAAGACAGACATTACGTT
AAAACCAAATACACTGTTTCAAGCGACCAAACCAAAATCATGACAGACAT
TATGACCAATGGACCAGTTGAAGGAGCTTTCACTGTCTATGCTGACTTCC
CCAACTACAAATCAGGTTTGAATTTCATGGAAGATTTGAAATATGTAGAG
CTGGCTCACTTATACTGGATATACTCTTAAAGCGGTAAAAGATGTAAATT
ACCcatattttaaaagttctccTGTTTGATTTGGACAGTATTTCAAGTAG
AGTTGTCtgatgaaaaattaataaataaataatgtaTCTTTAACTTTGTG
TGATCAGTGTTAGTGATGCCaacaaaataacatttttcttttttgttata
GGTGTTTATCAACACACCACTGGATCACAACTTGGTGGTCATGCCATCAA
AATCCTTGGATGGGGTACTGAGAGCGGAACACCTTACTGGTAAGGAAAAT
CTATATCGAAATTGTGACCttaataataaatttttttttgctgcaAATAG
TTTCAGACAGTTTCAATAAAACTTACATTAGAAAAGAACCCAACATTTAT
CTCCTAAAATCCATGTAAGTATCCGGATTTCAATTTTGCAAGCAGGTATT
TGCAACTAACTCATTTTTTCCTGCCTTTCATCAGTATTACAAGACTTAGA
TAGCCGAAAGTAATATTTTAATCTATCATTTATGTAGGTTGGTTGCCAAC
TCATGGAATCCAGACTGGGGAAACAAAGGTTCGTTTTCTGCtcagaaaga
atttttttttctatctgaGGAAACTGGGTTCGAGATTACAGGTTAATGTC
TGACAttcttaaagattttaaaaatcttgatgttatttccttgtaaattc
attcCCAGGCCCTTCGGAAGCCAACTGCACATTCaagggttgataggtgt
attaCTTTGATAGCGTATGAAAAGTGAGAAGGTTGGAAAtagtttatata
ttatattggcTTCTTTTTTTAAAGGGTTTTTCAAGATTAAACGTGGAGGA
AATGAATGTGGCATCGAATCCTCAATCACTGCTGGAATCCCTGcataaat
ttaaaatgaaaatgatttgttttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017232-exon-sc0000261-1491911889:256312..256623 | TCONS_00017232-exon-sc0000261-1491911889:256312..256623 | Clytia hemisphaerica | exon |
| TCONS_00017232-exon-sc0000261-1510915933:256312..256623 | TCONS_00017232-exon-sc0000261-1510915933:256312..256623 | Clytia hemisphaerica | exon |
| TCONS_00017232-exon-sc0000261-1575043694:256312..256623 | TCONS_00017232-exon-sc0000261-1575043694:256312..256623 | Clytia hemisphaerica | exon |
| TCONS_00017232-exon-sc0000261-1491911889:266674..266894 | TCONS_00017232-exon-sc0000261-1491911889:266674..266894 | Clytia hemisphaerica | exon |
| TCONS_00017232-exon-sc0000261-1510915933:266674..266894 | TCONS_00017232-exon-sc0000261-1510915933:266674..266894 | Clytia hemisphaerica | exon |
| TCONS_00017232-exon-sc0000261-1575043694:266674..266894 | TCONS_00017232-exon-sc0000261-1575043694:266674..266894 | Clytia hemisphaerica | exon |
| TCONS_00017232-exon-sc0000261-1491911889:267211..267329 | TCONS_00017232-exon-sc0000261-1491911889:267211..267329 | Clytia hemisphaerica | exon |
| TCONS_00017232-exon-sc0000261-1510915933:267211..267329 | TCONS_00017232-exon-sc0000261-1510915933:267211..267329 | Clytia hemisphaerica | exon |
| TCONS_00017232-exon-sc0000261-1575043694:267211..267329 | TCONS_00017232-exon-sc0000261-1575043694:267211..267329 | Clytia hemisphaerica | exon |
| TCONS_00017232-exon-sc0000261-1491911889:271195..271507 | TCONS_00017232-exon-sc0000261-1491911889:271195..271507 | Clytia hemisphaerica | exon |
| TCONS_00017232-exon-sc0000261-1510915933:271195..271507 | TCONS_00017232-exon-sc0000261-1510915933:271195..271507 | Clytia hemisphaerica | exon |
| TCONS_00017232-exon-sc0000261-1575043694:271195..271507 | TCONS_00017232-exon-sc0000261-1575043694:271195..271507 | Clytia hemisphaerica | exon |
| TCONS_00017232-exon-sc0000261-1491911889:271674..271826 | TCONS_00017232-exon-sc0000261-1491911889:271674..271826 | Clytia hemisphaerica | exon |
| TCONS_00017232-exon-sc0000261-1510915933:271674..271826 | TCONS_00017232-exon-sc0000261-1510915933:271674..271826 | Clytia hemisphaerica | exon |
| TCONS_00017232-exon-sc0000261-1575043694:271674..271826 | TCONS_00017232-exon-sc0000261-1575043694:271674..271826 | Clytia hemisphaerica | exon |
| TCONS_00017232-exon-sc0000261-1491911889:272063..272150 | TCONS_00017232-exon-sc0000261-1491911889:272063..272150 | Clytia hemisphaerica | exon |
| TCONS_00017232-exon-sc0000261-1510915933:272063..272150 | TCONS_00017232-exon-sc0000261-1510915933:272063..272150 | Clytia hemisphaerica | exon |
| TCONS_00017232-exon-sc0000261-1575043694:272063..272150 | TCONS_00017232-exon-sc0000261-1575043694:272063..272150 | Clytia hemisphaerica | exon |
| TCONS_00017232-exon-sc0000261-1491911889:272399..272439 | TCONS_00017232-exon-sc0000261-1491911889:272399..272439 | Clytia hemisphaerica | exon |
| TCONS_00017232-exon-sc0000261-1510915933:272399..272439 | TCONS_00017232-exon-sc0000261-1510915933:272399..272439 | Clytia hemisphaerica | exon |
| TCONS_00017232-exon-sc0000261-1575043694:272399..272439 | TCONS_00017232-exon-sc0000261-1575043694:272399..272439 | Clytia hemisphaerica | exon |
| TCONS_00017232-exon-sc0000261-1491911889:272686..272785 | TCONS_00017232-exon-sc0000261-1491911889:272686..272785 | Clytia hemisphaerica | exon |
| TCONS_00017232-exon-sc0000261-1510915933:272686..272785 | TCONS_00017232-exon-sc0000261-1510915933:272686..272785 | Clytia hemisphaerica | exon |
| TCONS_00017232-exon-sc0000261-1575043694:272686..272785 | TCONS_00017232-exon-sc0000261-1575043694:272686..272785 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000261 | supercontig | sc0000261:256312..272785 + |
Blast
BLAST of TCONS_00017232 vs. Swiss-Prot (Human)
Match: CATB (Cathepsin B OS=Homo sapiens GN=CTSB PE=1 SV=3) HSP 1 Score: 379.022 bits (972), Expect = 2.347e-128 Identity = 190/331 (57.40%), Postives = 239/331 (72.21%), Query Frame = 2
Query: 326 ALCCLLSVAFAKPSQNGLYNPLFQDIIDEVNSKQTTWKAGHNFDANVDHAYLKHLCGTFLDDPIRESLPEKQDF-ETVELPDEFDSRTKWGEICPSTKEVRDQGNCGSCWAFGAVEAFTDRICIASNGEKKPHISAEDLLSCCGFWCXXXXXXXXXXXAWNFFKRTGCVTGGQYSTKEGCRPYSIPACEHHTTGHLKPCSGDSHTPSCEKECRQGYNVSYTEDRHYVKTKYTVSSDQTKIMTDIMTNGPVEGAFTVYADFPNYKSGVYQHTTGSQLGGHAIKILGWGTESGTPYWLVANSWNPDWGNKGFFKIKRGGNECGIESSITAGIP 1315
+LCCLL +A A+ + ++PL ++++ VN + TTW+AGHNF NVD +YLK LCGTFL P P++ F E ++LP FD+R +W + CP+ KE+RDQG+CGSCWAFGAVEA +DRICI +N +SAEDLL+CCG CG GCNGG+ AWNF+ R G V+GG Y + GCRPYSIP CEHH G PC+G+ TP C K C GY+ +Y +D+HY Y+VS+ + IM +I NGPVEGAF+VY+DF YKSGVYQH TG +GGHAI+ILGWG E+GTPYWLVANSWN DWG+ GFFKI RG + CGIES + AGIP
Sbjct: 7 SLCCLLVLANARSRPS--FHPLSDELVNYVNKRNTTWQAGHNF-YNVDMSYLKRLCGTFLGGP---KPPQRVMFTEDLKLPASFDAREQWPQ-CPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIP 330
The following BLAST results are available for this feature:
|
