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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017231 ID=TCONS_00017231|Name=TCONS_00017231|organism=Clytia hemisphaerica|type=transcript|length=1734bp
attggtcgagagcgcACAATAGAGATTAGAACCCAGCTGACtttcatttt
tctgaaatcAATAAATAGAAATTTCTCGATCAAAACAACACCATTCACTG
CAAGACCTCGGAGAAGACACAGCAACGTCACAACACTTCTAAATCTTTCA
CATTCACTTCAAAATGCTCAGCAGCAAAGTTCTGATCATTTCAGCCATAA
CTGGTACCCACGGGCCAGATCAGGCAGAACAAGTCAACATTGTCCTTAGA
CATTTAACTGCAAGAGGCAACGACGTTATTTTATATGaTTTTTCTGCTGC
TAACAACGAACAATATGACATTGAAATGTTAAAGAAACAGTTAAATACAA
GTGGTATGGTTGAAAGTGTTGATGCTATCGTATTAATCACCGACGAATAT
TGCGCTTATCTTACTCAAGTACTTCAAGGACTTTTCAAAGTTAactccaa
aaaattaaaacgaTCCAGCAACGTCTGGTTCCATAATGGAGTTTGTTGTA
CAATTTTAGGAGGATCAGTCAAAAAATCAAGAGTAGCGAAACAATTATGG
GAAGTTTTCTCAGAACAAAATGAACTTGATTTAACCGATATTTTTCCTTA
TGGATCGCCAAGATCTTACGTTTTGGACTATACCAAGGAGACCGCACAAC
CAACAGTAGTATGAACATTCATTTGATGGTGATATTCTATAACAGAGCGG
AGTTTTGGTATGGTTGAAGTACTTCAAATGGCTGTCAATTTGGGGCTCTT
TGAAATTGTTGCTGTTAATAATCTGGCTGTATATCAGCATTTTCTCGTGT
TATTCTAAAGGACgtcaaaaagaataaaaatcaaaacaaaaaacaatgtT
GATAGATTTAACATGGTATTTTAAATAATAATGGTAAATTTACAGCAGTA
GTTTAAAGCTAGGTATTAATGAGATTGATTTTTAAGCCACTTAGCCCTGA
AAAGACTCACATGATTTGATGATATTAAAACTCTTCTCCGATTatcaatt
ttaagatttttaaagtctgatttgttttttgaaaaataggctgCTTTGCA
GTAATCTTATGTatatttattgtaaataaagaCGAAAGATAGTGAAACTA
TATTTTTTATAGTAAAAattatgttcttaatttttttcgaatttcaaact
aaaaaaaagcATCCTAGGggctttttttgtttatttttagcccaaaattt
tgtttcttttgttacatatttttttgtatatatcATATTTTTACGTTGAA
ATTTCTGTTTATAGTTTTTATAAGAAGTTGAGAGAGagctgaaaataatt
ttttttaaactgaacAAATTCGTTAGCAAAGGGTCCACTCCTGGTCGAGA
TATCCTTTggcaggtttttgaaatttttttatcgcAGAGCTCTATCGTTG
AATTTTTTGTGTTACACTTTTGAGAGAAAGCTATCAAACAGAAATTCATC
TCCTCTGACTTTTTTGTccttcaaaaaaaatgtaaatagttGTATATAAG
AAGAGGAAAAGAGCTGCAAAGTTTGTACATAGCTTTTCAAAGTAAAAGGA
TTCTTTTTAACATCGTGTTTTAAACGGTTCATAGCTTCAAACCTTTCCAG
AAAGTTATTGTAAAGAAAACGAGTGtgagagaaatgaaaaatatcaaaaa
agaaaaataatgttttttaaaaagcaaataaatgaaataatcaTCACAAA
AAGATATTATTATCTTGTTGATTCTTCTCTTATC Run BLAST on NCBI protein sequence of TCONS_00017231-protein >TCONS_00017231-protein ID=TCONS_00017231-protein|Name=TCONS_00017231-protein|organism=Clytia hemisphaerica|type=polypeptide|length=166bp
MLSSKVLIISAITGTHGPDQAEQVNIVLRHLTARGNDVILYDFSAANNEQ
YDIEMLKKQLNTSGMVESVDAIVLITDEYCAYLTQVLQGLFKVNSKKLKR
SSNVWFHNGVCCTILGGSVKKSRVAKQLWEVFSEQNELDLTDIFPYGSPR
SYVLDYTKETAQPTVV Run BLAST on NCBI transcript from alignment at sc0000261:217707..219643+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017231 ID=TCONS_00017231|Name=TCONS_00017231|organism=Clytia hemisphaerica|type=transcript|length=1937bp|location=Sequence derived from alignment at sc0000261:217707..219643+ (Clytia hemisphaerica)
attggtcgagagcgcACAATAGAGATTAGAACCCAGCTGACtttcatttt
tctgaaatcAATAAATAGAAATTTCTCGATCAAAACAACACCATTCACTG
CAAGACCTCGGAGAAGACACAGCAACGTCACAACACTTCTAAATCTTTCA
CATTCACTTCAAAATGCTCAGCAGCAAAGTTCTGATCATTTCAGCCATAA
CTGGTACCCACGGGCCAGATCAGGCAGAACAAGTCAACATTGTCCTTAGA
CATTTAACTGCAAGAGGCAACGACGTTATTTTATATGGTAAGAGTTCCTA
ACTTTTTGATGTCTTTTTTCATCATTCATTTGAACTTGTTATGCAAGTCG
TTTCTAAATTATGCTGAGCTTTCTTATCTTaagttttttgatttcatttc
atACATTTCACTTATTTTTCttgcaattataatttgatTCACAATTTtcg
tagaatttttttaaattttcattcttttttttctcttcagaTTTTTCTGC
TGCTAACAACGAACAATATGACATTGAAATGTTAAAGAAACAGTTAAATA
CAAGTGGTATGGTTGAAAGTGTTGATGCTATCGTATTAATCACCGACGAA
TATTGCGCTTATCTTACTCAAGTACTTCAAGGACTTTTCAAAGTTAactc
caaaaaattaaaacgaTCCAGCAACGTCTGGTTCCATAATGGAGTTTGTT
GTACAATTTTAGGAGGATCAGTCAAAAAATCAAGAGTAGCGAAACAATTA
TGGGAAGTTTTCTCAGAACAAAATGAACTTGATTTAACCGATATTTTTCC
TTATGGATCGCCAAGATCTTACGTTTTGGACTATACCAAGGAGACCGCAC
AACCAACAGTAGTATGAACATTCATTTGATGGTGATATTCTATAACAGAG
CGGAGTTTTGGTATGGTTGAAGTACTTCAAATGGCTGTCAATTTGGGGCT
CTTTGAAATTGTTGCTGTTAATAATCTGGCTGTATATCAGCATTTTCTCG
TGTTATTCTAAAGGACgtcaaaaagaataaaaatcaaaacaaaaaacaat
gtTGATAGATTTAACATGGTATTTTAAATAATAATGGTAAATTTACAGCA
GTAGTTTAAAGCTAGGTATTAATGAGATTGATTTTTAAGCCACTTAGCCC
TGAAAAGACTCACATGATTTGATGATATTAAAACTCTTCTCCGATTatca
attttaagatttttaaagtctgatttgttttttgaaaaataggctgCTTT
GCAGTAATCTTATGTatatttattgtaaataaagaCGAAAGATAGTGAAA
CTATATTTTTTATAGTAAAAattatgttcttaatttttttcgaatttcaa
actaaaaaaaagcATCCTAGGggctttttttgtttatttttagcccaaaa
ttttgtttcttttgttacatatttttttgtatatatcATATTTTTACGTT
GAAATTTCTGTTTATAGTTTTTATAAGAAGTTGAGAGAGagctgaaaata
attttttttaaactgaacAAATTCGTTAGCAAAGGGTCCACTCCTGGTCG
AGATATCCTTTggcaggtttttgaaatttttttatcgcAGAGCTCTATCG
TTGAATTTTTTGTGTTACACTTTTGAGAGAAAGCTATCAAACAGAAATTC
ATCTCCTCTGACTTTTTTGTccttcaaaaaaaatgtaaatagttGTATAT
AAGAAGAGGAAAAGAGCTGCAAAGTTTGTACATAGCTTTTCAAAGTAAAA
GGATTCTTTTTAACATCGTGTTTTAAACGGTTCATAGCTTCAAACCTTTC
CAGAAAGTTATTGTAAAGAAAACGAGTGtgagagaaatgaaaaatatcaa
aaaagaaaaataatgttttttaaaaagcaaataaatgaaataatcaTCAC
AAAAAGATATTATTATCTTGTTGATTCTTCTCTTATC Coding sequence (CDS) from alignment at sc0000261:217707..219643+ >TCONS_00017231 ID=TCONS_00017231|Name=TCONS_00017231|organism=Clytia hemisphaerica|type=CDS|length=1002bp|location=Sequence derived from alignment at sc0000261:217707..219643+ (Clytia hemisphaerica)
ATGCTCAGCAGCAAAGTTCTGATCATTTCAGCCATAACTGGTACCCACGG
GCCAGATCAGGCAGAACAAGTCAACATTGTCCTTAGACATTTAACTGCAA
GAGGCAACGACGTTATTTTATATGaTTTTTCTGCTGCTAACAACGAACAA
TATGACATTGAAATGTTAAAGAAACAGTTAAATACAAGTGGTATGGTTGA
AAGTGTTGATGCTATCGTATTAATCACCGACGAATATTGCGCTTATCTTA
CTCAAGTACTTCAAGGACTTTTCAAAGTTAactccaaaaaattaaaacga
TCCAGCAACGTCTGGTTCCATAATGGAGTTTGTTGTACAATTTTAGGAGG
ATCAGTCAAAAAATCAAGAGTAGCGAAACAATTATGGGAAGTTTTCTCAG
AACAAAATGAACTTGATTTAACCGATATTTTTCCTTATGGATCGCCAAGA
TCTTACGTTTTGGACTATACCAAGGAGACCGCACAACCAACAGTAGTATG
AATGCTCAGCAGCAAAGTTCTGATCATTTCAGCCATAACTGGTACCCACG
GGCCAGATCAGGCAGAACAAGTCAACATTGTCCTTAGACATTTAACTGCA
AGAGGCAACGACGTTATTTTATATGaTTTTTCTGCTGCTAACAACGAACA
ATATGACATTGAAATGTTAAAGAAACAGTTAAATACAAGTGGTATGGTTG
AAAGTGTTGATGCTATCGTATTAATCACCGACGAATATTGCGCTTATCTT
ACTCAAGTACTTCAAGGACTTTTCAAAGTTAactccaaaaaattaaaacg
aTCCAGCAACGTCTGGTTCCATAATGGAGTTTGTTGTACAATTTTAGGAG
GATCAGTCAAAAAATCAAGAGTAGCGAAACAATTATGGGAAGTTTTCTCA
GAACAAAATGAACTTGATTTAACCGATATTTTTCCTTATGGATCGCCAAG
ATCTTACGTTTTGGACTATACCAAGGAGACCGCACAACCAACAGTAGTAT
GA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017231-exon-sc0000261-1491911889:217707..217993 | TCONS_00017231-exon-sc0000261-1491911889:217707..217993 | Clytia hemisphaerica | exon |
| TCONS_00017231-exon-sc0000261-1510915933:217707..217993 | TCONS_00017231-exon-sc0000261-1510915933:217707..217993 | Clytia hemisphaerica | exon |
| TCONS_00017231-exon-sc0000261-1575043694:217707..217993 | TCONS_00017231-exon-sc0000261-1575043694:217707..217993 | Clytia hemisphaerica | exon |
| TCONS_00017231-exon-sc0000261-1491911889:218197..219643 | TCONS_00017231-exon-sc0000261-1491911889:218197..219643 | Clytia hemisphaerica | exon |
| TCONS_00017231-exon-sc0000261-1510915933:218197..219643 | TCONS_00017231-exon-sc0000261-1510915933:218197..219643 | Clytia hemisphaerica | exon |
| TCONS_00017231-exon-sc0000261-1575043694:218197..219643 | TCONS_00017231-exon-sc0000261-1575043694:218197..219643 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000261 | supercontig | sc0000261:217707..219643 + |
Blast
The following BLAST results are available for this feature:
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