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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017215 ID=TCONS_00017215|Name=TCONS_00017215|organism=Clytia hemisphaerica|type=transcript|length=448bp
CAGGTGATGATTGGGAAGTAAAATGCAGTACCAAAAATTGGAATCGAAAC
GATAAAATCAGATTCAAACACGCCGATACTGGAAGATTTTTACATGCATC
GTCGGATCAGTACGGTCGACCTATCGCTGGACAACATGAGATCTGTGCAT
ATCACAATGAAGACGCTGCCAATCTCTGGGTTGCTCAGGCTGGCGTTTAC
ATCAAAGCCAAGAAGTGAGACTTGTAATGGAGAGATGATCCAAAAAATTT
ACATATAgatagaaacttttttcaaattttatgatATTTATATTGCTGGT
TAGGTCTTAGAAATGACTAGCGGACTTGAGTTGCTTCATGTACGAGGTCG
AGTATTTCCGCCTAGGAAGTTTCTTTTGCTCATGAGCAGGATTTTTGATA
CACTTTAAAAGAAATGCAAGTCGCGGGCAATTTTAAGTCGAGGTGACT Run BLAST on NCBI transcript from alignment at sc0000261:15314..18642+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017215 ID=TCONS_00017215|Name=TCONS_00017215|organism=Clytia hemisphaerica|type=transcript|length=3329bp|location=Sequence derived from alignment at sc0000261:15314..18642+ (Clytia hemisphaerica)
CAGGTGATGATTGGGAAGTAAAATGCAGTACCAAAAATTGGAATCGAAAC
GATAAAATCAGATTCAAACACGCCGATACTGGAAGGTGAGTGGAATGGAG
TCACCGTtcatttgttttggttaaagAGATAATCAGATTTGCACGAgtaa
aagggataatcagatggtttcaGACCTGTTCAAGTCTATTTTCCTCTATC
TGCCGAGAGTACTCGATGATATCAGTCTTTgtttaaattaaaagaaagag
actttgATTTATTATTATCGACGATAATCATCAGCTAAAATCAAAATGCA
GCTAAAAGGCTGATTTAGCTGATGATTTGTCGTCCATACGGGtggcatga
aacttaaagttctaaataataaatcaaagtctcttttttttaattttaag
tgtACCTGTTCTTATACATTGAAAATGTGATTCCCCAAGTAGTTTTGTCA
ACTGACGAGTCTGTGTCAGGATATTCcactttaaaatttcgaaatctgAG
CTCTTTCCAACTCGAGAGGTGGGCGAGAGTTCCCACTGgcaaccatctga
ttatccctttaaagaaaCATTCTAGAGAGTTCTAGAGACTGGATTTATAA
AGACTCCATTTATAAAGACTCCATTGTgcattcaactttttctttaCTTT
CGCACCAGAACTTTCCTTATTCGGATTTTCTTAGTTTTCTCGGAAACtct
taagggctacatacactacacaatatattgtcaggcaatacattgataat
atattgctgaatgtcgacaatatattgaaGAGGTgtcaatatattgtcag
ctagatttgcaatattccaagaatatagggggattgttaGACTGGCACgt
cagtcgggctggaacggtatcacgcgggaaaagtgagcgtaggagttagg
taagcgtaggaagaaattttgtcggcggcaagggctgaaagctaatcggc
agcctctcaccaacttttgctcgttctcctacgcagctcctattctagca
aacgcccgccgcctttatgtacccgccctctgacatgattaattaacaga
ctagtttgctagtctaggggattgtttacaaaatgaaaattcctttttat
aatagagcaccTGTTGTTTACTCCGTACATCGCGGTCCGAAAACTATATT
GTCGACTATTGctcaccaatatattgtgtagtctaagtagccctttacAA
ATACACGAATTCCACTCGAATATGAAGATAATTTGTTCTTGAAGATCAGG
GTTAAAATTCTCCCCATAAATAAAACTCTACTAGTGTAGGTATCAAGAAA
GAGTAAAAACTCAAAACTCACGTGAGTTTTTGAAGGCTTGAAGTCAACTC
GAGTCTTGTAATCAATCagccaaacaaaaaaaatgtatttgtaTCGTAAA
AAAAAATGCCAGCCTTTGACATGATAAGCATAAATGTGGTatgatattta
gaaaaattgagcTTAGAAGGCTAAGCGTCTCCAGCCCTGAGCCTTATATC
TGGTTTGCTTTCTTTAAAAATGTGATATTTTTCCTTGAAGACTTATAGtg
tgattttcaaaagtttttgcaGTTCATAAAATACAATTGAGTCTCCATAT
CTCGAACATGcacagggaacacaaatttgatCGAGTTAAGGACATTTCGA
GAtgatggagtaaggtttatagaACATTATCAATTGGAGGGGATCATAAA
ACATGtccgagttaaagagacattcgagttaaataGGTTCTATTGTTCAT
TCTTTAGATTTTTACATGCATCGTCGGATCAGTACGGTCGACCTATCGCT
GGACAACATGAGATCTGTGCATATCACAATGAAGACGCTGCCAATCTCTG
GGTTGCTCAGGTATGAACGATCAAAGCTAACTTCTCcttttttcgagagc
tttcttTTCACCCTGtagaaatatctttaaaatcttttttgtgaTATAGA
AAGGAGGcttttatgctgacaaagcagaatgaacaaaagattttctcaaa
atttgtgctcGCTTGGCGCCCGCGGGAGAGGGGATAgttttgttctttct
tttgtttaaaggttttgtttttacattagtgtttccgtttcatatcagac
acatattttatatcaggaAAGTGTCTTggtattgttatattatgcttata
taagcaaaataatgtttttcttttcctctttctgaccaatcttgcttcac
atccgtgtcaattcaatgtgaaaaagcttgtaaattaaaattgatgagta
agcaaacgttatcactgttatttaaaaacaaaacctttaagaatgTCGTG
TAAGCAAATGATAGGAGATACGTAAAATGATGCCGTTTATAAATTGATAG
GCTGTTAGCTTCTATCTGATTTGTTTTTTGATATAACAACTATTTCAGGG
ATGCCcactaggctacgtcatatcttcctccgtttcgagcgtaaaactcc
tactcaagaaggcctaaaagcctggagctgtctattgtgtagactaatgC
CCACATGCTAAAGTAGTGATCTTCATATCTATTATTTCGCGCTGAAACAG
ATAAACCGTGATAGTTAAGCTTACTTATATATAAGTTTGCTTTCTTCTTG
GCCTCGTTTGTACTTTGCCACCACAAAATGTGTTTAGATATTACGACTGG
TTACCTGATAAAGCGCCCTCCCTGCTAGTTAGAGTTCCGGAGGTTTTACA
CCCGGACCATTCTTATTccatttagaaaaatatttacacaataaattgaa
gttgagattcgaattgtttgatactcaaagtttcatgcaacttttcgtaa
cgatcttcagtcaaaaattctatATTCAAACAATTCTAATCGCAACTTCA
ATTTATTATGTAAAATGCTTCCACCAGGCCAAGAAGATATAAACAActga
aaaagtagaaaaatatttttctttaaggCTCCTTTTCAATTATTTCCACA
AAGGGCATTCTATTCCAACACCCTTCCTTGCCTAGGCTGTTAAACACACA
GCGcctaatttttataaaattgttgtttttaaacTTTAGTCATTTCTATT
TTATCAATTTCTATTTCAGGCTGGCGTTTACATCAAAGCCAAGAAGTGAG
ACTTGTAATGGAGAGATGATCCAAAAAATTTACATATAgatagaaacttt
tttcaaattttatgatATTTATATTGCTGGTTAGGTCTTAGAAATGACTA
GCGGACTTGAGTTGCTTCATGTACGAGGTCGAGTATTTCCGCCTAGGAAG
TTTCTTTTGCTCATGAGCAGGATTTTTGATACACTTTAAAAGAAATGCAA
GTCGCGGGCAATTTTAAGTCGAGGTGACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017215-exon-sc0000261-1491911889:15314..15398 | TCONS_00017215-exon-sc0000261-1491911889:15314..15398 | Clytia hemisphaerica | exon |
| TCONS_00017215-exon-sc0000261-1510915933:15314..15398 | TCONS_00017215-exon-sc0000261-1510915933:15314..15398 | Clytia hemisphaerica | exon |
| TCONS_00017215-exon-sc0000261-1575043694:15314..15398 | TCONS_00017215-exon-sc0000261-1575043694:15314..15398 | Clytia hemisphaerica | exon |
| TCONS_00017215-exon-sc0000261-1491911889:17071..17173 | TCONS_00017215-exon-sc0000261-1491911889:17071..17173 | Clytia hemisphaerica | exon |
| TCONS_00017215-exon-sc0000261-1510915933:17071..17173 | TCONS_00017215-exon-sc0000261-1510915933:17071..17173 | Clytia hemisphaerica | exon |
| TCONS_00017215-exon-sc0000261-1575043694:17071..17173 | TCONS_00017215-exon-sc0000261-1575043694:17071..17173 | Clytia hemisphaerica | exon |
| TCONS_00017215-exon-sc0000261-1491911889:18383..18642 | TCONS_00017215-exon-sc0000261-1491911889:18383..18642 | Clytia hemisphaerica | exon |
| TCONS_00017215-exon-sc0000261-1510915933:18383..18642 | TCONS_00017215-exon-sc0000261-1510915933:18383..18642 | Clytia hemisphaerica | exon |
| TCONS_00017215-exon-sc0000261-1575043694:18383..18642 | TCONS_00017215-exon-sc0000261-1575043694:18383..18642 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000261 | supercontig | sc0000261:15314..18642 + |
Blast
The following BLAST results are available for this feature:
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