TCONS_00017205 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017205
Unique NameTCONS_00017205
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length317

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017205 ID=TCONS_00017205|Name=TCONS_00017205|organism=Clytia hemisphaerica|type=transcript|length=317bp
AAATAAACGAAAAACCGTTCCGGTTTTTAGAAAGAGTGATTCGAAATAGA
CAAACATCGAGCTAGAATTTAGATGAATAATTTTACAATTTACAAGcttg
aagtttttcaaatttttaactaaaattttaagggcaaaaaattatcgaaa
caaaaacataatgACGTTAATAATATTGTctaacataaaaataaaacatt
tgctATATTGTGTATAAAAAAATGTCACTAGTTACAAAATGCATTATTAT
CAAATTCCGTTCTTTCAAACTATAATAAATCCAGCTAGTCTTTTCCGAGT
TCGGGTTAAGAGTTCAt
Run BLAST on NCBI

transcript from alignment at sc0000260:208040..208356

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017205 ID=TCONS_00017205|Name=TCONS_00017205|organism=Clytia hemisphaerica|type=transcript|length=317bp|location=Sequence derived from alignment at sc0000260:208040..208356 (Clytia hemisphaerica)
aTGAACTCTTAACCCGAACTCGGAAAAGACTAGCTGGATTTATTATAGTT
TGAAAGAACGGAATTTGATAATAATGCATTTTGTAACTAGTGACATTTTT
TTATACACAATATagcaaatgttttatttttatgttagACAATATTATTA
ACGTcattatgtttttgtttcgataattttttgcccttaaaattttagtt
aaaaatttgaaaaacttcaagCTTGTAAATTGTAAAATTATTCATCTAAA
TTCTAGCTCGATGTTTGTCTATTTCGAATCACTCTTTCTAAAAACCGGAA
CGGTTTTTCGTTTATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009625XLOC_009625Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017205-exon-sc0000260-1491911889:208040..208356TCONS_00017205-exon-sc0000260-1491911889:208040..208356Clytia hemisphaericaexon
TCONS_00017205-exon-sc0000260-1510915933:208040..208356TCONS_00017205-exon-sc0000260-1510915933:208040..208356Clytia hemisphaericaexon
TCONS_00017205-exon-sc0000260-1575043694:208040..208356TCONS_00017205-exon-sc0000260-1575043694:208040..208356Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000260supercontigsc0000260:208040..208356 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.24033	6.0853	8.18124	10.187	0	0	1.26678	0.395314	4.4283	1.71411	1.99651	3.71855	2.83964	3.17584	3.54346	2.60183	0.739672	2.52713	1.04741	2.55743	4.44574	4.18206	6.0253	4.1084	0	0.314714	7.65602	6.24819	7.65536	6.31396
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017205 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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