TCONS_00017191 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017191
Unique NameTCONS_00017191
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length505

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017191 ID=TCONS_00017191|Name=TCONS_00017191|organism=Clytia hemisphaerica|type=transcript|length=505bp
TCGTTGTGATTTGTATGAATGTCGGgcaaaaaaacaatctttttcGAAAG
CACTCTCCCACCATCAATCAGTGTGAAgtggaaatttttgacttttacaa
gctttttcatcaaaatatcgaCAATATCTATTGGCAATCTTTTAAATACA
GATTCACATCCAAATATAAAGGATTCTCATTCTGTGGTGTCAACAACAGA
AAATGGTTATATCCACGACTAACATTTATTCATTGAACGGGATTTGTATG
AGGAGCAGATGAGAGATGCTGATGTCAAGAAAGATGAATTACATGTATTT
ACGATAAATCATACATTATGATGTTTGACGTTACTCCCCAGCTGGATTGA
TCTAAATCAATGTCGTTAATCAACTGGTCAAATTCTAGTAAAAAGCAAAG
CTTTTAAGTTTGTTATTAAATCTCTCACACACGCAGAAAAAAATCGATAT
CCATTTCTTTAAATTGACATTATAATGACAGGACTTATTTGGAAATGAAT
TTCTA
Run BLAST on NCBI

transcript from alignment at sc0000260:264104..264919-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017191 ID=TCONS_00017191|Name=TCONS_00017191|organism=Clytia hemisphaerica|type=transcript|length=816bp|location=Sequence derived from alignment at sc0000260:264104..264919- (Clytia hemisphaerica)
TCGTTGTGATTTGTATGAATGTCGGGCAAAAAAACAATCTTTTTCGAAAG
CACTCTCCCACCATCAATCAGTGTGAAGTGGAAATTTTTGACTTTTACAA
GCTTTTTCATCAAAATATCGACAATATCTATTGGCAATCTTTTAAATACA
GATTCACATCCAAATATAAAGGTAGGAGTTGAATATTTATTTCTTTTTTC
TATGAAAAGAGAGGGAAAAGTATGTTGTTGGAATGAGAATGCTGACAAGC
TGATGAGGTTTCTTCGACTCTCTAACTAAAATCATTAATTTTTTTTTGAT
TTTCACAAATCTTCCCTACATATACATTACTGATAGTACAGGAAACAATT
TACCAAATGTGCTTTCGAAGAACTACTACCCTACTACCTTCACTGTCCTT
CACTCAAATGTATAGAAAATTAAATAATATATACCTTGTCAAAATTGCTT
TTTTTAAAGAGTACATTTTTTTACATTTTTAGGATTCTCATTCTGTGGTG
TCAACAACAGAAAATGGTTATATCCACGACTAACATTTATTCATTGAACG
GGATTTGTATGAGGAGCAGATGAGAGATGCTGATGTCAAGAAAGATGAAT
TACATGTATTTACGATAAATCATACATTATGATGTTTGACGTTACTCCCC
AGCTGGATTGATCTAAATCAATGTCGTTAATCAACTGGTCAAATTCTAGT
AAAAAGCAAAGCTTTTAAGTTTGTTATTAAATCTCTCACACACGCAGAAA
AAAATCGATATCCATTTCTTTAAATTGACATTATAATGACAGGACTTATT
TGGAAATGAATTTCTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009612XLOC_009612Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017191-exon-sc0000260-1575043694:264749..264919TCONS_00017191-exon-sc0000260-1575043694:264749..264919Clytia hemisphaericaexon
TCONS_00017191-exon-sc0000260-1575043694:264104..264437TCONS_00017191-exon-sc0000260-1575043694:264104..264437Clytia hemisphaericaexon
TCONS_00017191-exon-sc0000260-1510915933:264749..264919TCONS_00017191-exon-sc0000260-1510915933:264749..264919Clytia hemisphaericaexon
TCONS_00017191-exon-sc0000260-1510915933:264104..264437TCONS_00017191-exon-sc0000260-1510915933:264104..264437Clytia hemisphaericaexon
TCONS_00017191-exon-sc0000260-1491911889:264749..264919TCONS_00017191-exon-sc0000260-1491911889:264749..264919Clytia hemisphaericaexon
TCONS_00017191-exon-sc0000260-1491911889:264104..264437TCONS_00017191-exon-sc0000260-1491911889:264104..264437Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000260supercontigsc0000260:264104..264919 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.35027	0.467252	0	1.58198	35.229	23.9781	29.4755	40.5708	14.582	24.3883	11.3794	12.4817	6.05112	3.73985	3.05478	3.5886	3.79144	5.69103	6.62701	10.8567	14.0414	9.11457	6.32775	11.1802	2.55816	7.70567	40.577	21.6959	19.9934	17.6931
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017191 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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