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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017187 ID=TCONS_00017187|Name=TCONS_00017187|organism=Clytia hemisphaerica|type=transcript|length=1031bp
gcctaaaaattgacattctcgctcgaacttcaattttcgaaaaattgtaa
attagccaaaagtgccaatatattatgaccctgattgtaGTCGGTAACAA
ACGTGTTAAAGGGTCTGTTAGCATAAACATATAGAACAAAAAAATCAGTA
AAGGTTTTATATACGTCGCACTTTCATTTCGACGAAGGTCGGTTGATTTT
TTTTACTGTTATCCCAAGTGATTTCACCATCCTTTTTAGTGAACTTGTAC
TTACCTGTTAACAGCGTCCTGTAGCAAGTGTTATACCACCAACCAACTTT
ATCATAAAAATGTGAGCATTTTCCACCATGCTTATCGTTGTCAGAATCAt
aagttgaaaatttcatacCATTGTGATATATTTTAAAGGTATCAGGGCCT
GTCACATTTCCTGTTGCACCGGCCAGGGTCAATTGATATTTGGTCCCCTC
ACTTCCAACTGCGAACGTATCGTATAGCGCATGCACAGGAACACGGGGtt
ttcctttgattttcatGTCGATCAAAAGTTGGGATTTCCTCGGAGCCATT
TCAGGTTTAGTTAGATCATGCATATTTTCATTACCAATCCAAAATTCTCC
TTCTAAACGACCGAAACCGACTTTGTAGTCATGCCAATTTCGTGCAAAAT
CGACAGAGCCATCAACGCGACGCAAAAGGACGGTCCAACCACCACCTTGT
GTCGTTTGGTCACAGCGAACGCTCAGTTGATTGAATTGTGGACTTGATAG
TTTATACAAACCATTATTAGAGTATCCAGCTTCTAAAAAGGCTTTGCAAT
CTTGCATTGGAATGACATCTCTACAATCACATAATCTGCTGTTCTTCATT
GGTTTGCACGGAACGCAAGGACTGGAAATCAGCTTTCGGATCTTTTGAAT
GAATCTATCACATGCTGTTCCGTAGACTGAATCCAAAGCCATGTATTGGA
GGAACAGAACCAGGACAAAACTTGTCTTGAAGTTCATTTCTGCTCTCCTA
TTCTGTTCAATTGTTGTTGAAGTTGCAGTCA Run BLAST on NCBI transcript from alignment at sc0000260:157024..160602- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017187 ID=TCONS_00017187|Name=TCONS_00017187|organism=Clytia hemisphaerica|type=transcript|length=3579bp|location=Sequence derived from alignment at sc0000260:157024..160602- (Clytia hemisphaerica)
GCCTAAAAATTGACATTCTCGCTCGAACTTCAATTTTCGAAAAATTGTAA
ATTAGCCAAAAGTGCCAATATATTATGACCCTGATTGTAGTCGGTAACAA
ACGTGTTAAAGGGTCTGTTAGCATAAACATATAGAACAAAAAAATCAGTA
AAGGTTTTATATACGTCGCACTTTCATTTCGACGAAGGTCGGTTGATTTT
TTTTACTGTTATCCCAAGTGATTTCACCATCCTTTTTAGTGAACTTGTAC
TTACCTGTTAACAGCGTCCTGTAGCAAGTGTTATACCACCAACCAACTTT
ATCATAAAAATGTGAGCATTTTCCACCATGCTTATCGTTGTCAGAATCAT
AAGTTGAAAATTTCATACCATTGTGATATATTTTAAAGGTATCAGGGCCT
GTCACATTTCCTGTTGCACCGGCCAGGGTCAATTGATATTTGGTCCCCTC
ACTTCCAACTGCGAACGTATCGTATAGCGCATGCACAGGAACACGGGGTT
TTCCTTTGATTTTCATGTCGATCAAAAGTTGGGATTTCCTCGGAGCCATT
TCAGGTTTAGTTAGATCATGCATATTTTCATTACCAATCCAAAATTCTCC
TTCTAAACGACCGAAACCGACTTTGTAGTCATGCCAATTTCGTGCAAAAT
CGACAGAGCCATCAACGCGACGCAAAAGGACGGTCCAACCACCACCTTGT
GTCGTTTGGTCACAGCGAACGCTCAGTTGATTGAATTGTGGACTTGATAG
TTTATACAAACCATTATTAGAGTATCCAGCTTCTAAAAAGGCTTTGCAAT
CTTGCATTGGAATGACATCTCTACAATCACATAATCTGCTGTTCTTCATT
GGTTTGCACGGAACGCAAGGACTGGAAATCAGCTTTCGGATCTTTTGAAT
GAATCTATCACATGATGTTCCGTAGACTGAATCCAAAGCAATGTATTGGA
GGAACAGAACCAGGACAAAACTTGTCTTGAAGTTCATTGCTGCTCTTCTA
TTCTGTTCAACTGTTGTTGAAGTTGTTGTCAAAATTTGAGTGATGTAAAA
TTTCTTATCCACCCTCCTTTTATACACGACAACAGAGGCGCATTTATCCT
TTGAATCTTTTTGAAGTCCCCGCGAATGTTTACATATTTACAAAGGTCTA
GTCCAAAATAGTTTCACGTGACTTAGAGAATCAGATTACTAATGCTCTTT
TGATCAGCCAACAATCAAACAAACGCGCACCGTCTAGGAGTTAAAATTCA
ATTTTGAAACGCATTTTATATTGCTTCTAAATGACTTAGTATAGTATATC
AAAGAATTAGACTTGCATACATTTCCTCCTTTTCCATGATTTTGTCTGGC
AGAAATAAAAGTAGACCTTGAAAAAAATTCCGTGTAAACTTTCTTGGTAC
CTTTGGAAGCGGAATTTTATGAGGTTTAACATACTCAGAGCCTCATGTTG
AGGTCCTTGGGGAAAAATATTGGTAAAATAATACATTAAGGACTCATCTT
CGCTATCAAATGCCTTGAAAAGTGCTATCCTTGCAATGGTAGGTGTCTTT
TAAAACGTTCGATGTATACCCCTGTCTCAAAAATCCTAGGAAGGGGGGGG
GGGTTCCCAACAATCATTTCTGAAAACCACAATCAATTAAACAGTGTCAT
CCATGATATGAAATGGGTCAAGCGCAAGGCGAAAGCACATGGTGATAGCG
CTGCCTTTCAAAGATTTTGAATAGCTTTGATAAGTTCTTAGTGTAGCTGA
CCAGTACAGTGCTCAAAAACGTATCTATTTTAGGGCAAAGAAGTACACTT
CAGGCTTGATTTTACCAAAAGTTTTCCTTTAGGAACTCATCATGAGGCTC
TGAGTACGATAATCTACATAAAATTCCGCTTCCAACGGTACCAAGAAAGT
TTATGCGGAATTTTTTTGTACGTTCACCCCTGTTTTATTGTATTTCAGCC
AGACTAATTATTTTATCTTTCAAATCCAAATTTTTAGTAACATCATCTCT
CTAATAAGAATATACCTGGAGATTAATTTTGTGTTTTGATTTACGGTAAA
CAAACAAAAAATTACATTTCCGCGTTGTCTGAAGAACCTGGCGAAGGAAC
AAAGATGTGAAAAATATTATAGTAAAAATTTTGTCATATTTTCTCCCAAA
TCAAATAAGAAATTACAAAGAGAGGTGTACATAAATCCTCTCCAAACGAA
AAAGGATGTGTACAACTTACAAATTATAAATTACAAGTGAATGAAAAAGC
AAGAAAAATTACCTTTAATATAATTAACACTCTATAAATGACCTTTTTTG
TATATTTTTTAGAAAATAGACAATTCCTAACTCCAAACAGTTATATTTCT
GGCCCTAGAAGGCTCGTTTGATTTCAAAGAACCTTTTTTATTAGAACACC
TTCGGCACTGCAGATCTTCAGTTGGTCAATAGACATTTTCGGCTATGCTT
GCATATATGCACTTAACTCGATCCTTACGCGCCCTTTTCAGAAATTGAAA
AATTGACCCAGTGGAAGTTCCATGAAAGTTTGCCTTTCAGAGGATCCTTT
GACCTGCCTGCATTTCGTTTTAAAATACTAATAAATTGTGTACAAGTGGA
CGTAGAGTTTTATAGAGATTTCGAAAAATACACTCAAAAATTAAGTCGGT
AACGAACGTGTTAAAGGGTCAGTTACCATAAACATAGAACAAAATCAGTA
AACGTTTTTATATACGTCGCACTTTCATTTCGACGAAAGTTGGTTGAGTC
GCTTTAAAGTTATACCACATGATATCACCATCCTTTTTAGTGAACTTGTA
CTGACCTGTTAACAGCGTTTTGTAGCAAGCCTTATACCACCAACCAGCTT
TATCATAAAAATGTGAGCATTGTTTACCATGTTTATCGTTGTCCTGGTCA
TAAGTTGAAAATTTCATACCATTGTGATATTTAAAGATGTCGGGGTTTGA
CACATTCCCTGTTGCACCGGCCAGGGTCAATTGATATTTGGTCGCCTCGT
TTCCAACTGCGAACGTATTGTAAAGCGCATGCACAGGAACACTGGGTTTT
CCTTTGATCTTCATGTCGATCAAAAGTTGGGATTGCCTCGGAGCCATTTC
AGGTTTAGTTAGATCATGCATATTTTCATTACCAATCCAAAATTCTCCTT
CTAAATGACCGAAACCGACTTTGTAGTCATGCCAATTTCGTGCGAAATCG
ACGGAGCCATCAACTCGACGCAAAAGGACGGTCCAACCACCACCTTGAGT
CTTTTGGTCACAGCGAACGCTCAGTTGATTGAATTGTGGACTTGATAGTT
TATACAAACCATTCTTAGAGTATCCGGCTTGCAAAAAGGCTTTGCAATCT
TGCATTGGAGTGACATCTCTACAATCACATAATCTGCTGTTCTTCATTGG
TTTGCACGGAACGCAAGGACCGGAAATCATCTCCCGGATCTTTTGAATGA
ATCTATCACATGCTGTTCCGTAGACTGAATCCAAAGCCATGTATTGGAGG
AACAGAACCAGGACAAAACTTGTCTTGAAGTTCATTTCTGCTCTCCTATT
CTGTTCAATTGTTGTTGAAGTTGCAGTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017187-exon-sc0000260-1575043694:159692..160602 | TCONS_00017187-exon-sc0000260-1575043694:159692..160602 | Clytia hemisphaerica | exon |
| TCONS_00017187-exon-sc0000260-1575043694:157024..157143 | TCONS_00017187-exon-sc0000260-1575043694:157024..157143 | Clytia hemisphaerica | exon |
| TCONS_00017187-exon-sc0000260-1510915933:159692..160602 | TCONS_00017187-exon-sc0000260-1510915933:159692..160602 | Clytia hemisphaerica | exon |
| TCONS_00017187-exon-sc0000260-1510915933:157024..157143 | TCONS_00017187-exon-sc0000260-1510915933:157024..157143 | Clytia hemisphaerica | exon |
| TCONS_00017187-exon-sc0000260-1491911889:159692..160602 | TCONS_00017187-exon-sc0000260-1491911889:159692..160602 | Clytia hemisphaerica | exon |
| TCONS_00017187-exon-sc0000260-1491911889:157024..157143 | TCONS_00017187-exon-sc0000260-1491911889:157024..157143 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000260 | supercontig | sc0000260:157024..160602 - |
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00017187 vs. Swiss-Prot (Human)
Match: FCN3 (Ficolin-3 OS=Homo sapiens GN=FCN3 PE=1 SV=2) HSP 1 Score: 133.65 bits (335), Expect = 8.763e-36 Identity = 74/190 (38.95%), Postives = 103/190 (54.21%), Query Frame = -3
Query: 235 QDCKAFLEAGYSNNGLYKLSSPQFNQLSVRCDQTTQGGGWTVLLRRVDGSVDFARNWHDYKVGFGRLEGEFWIGNENMHDLTKPEMAPRKSQLLIDMKIKGKPRVPVHALYDTFAVGSEGTKYQLTLAGATGNVTGPDTFKIYHNGMKFSTYDSDNDKHGGKCSHFYDKVGWWYNTCYRTLLTGKYKFTK 804
++C+ L G + +G Y L P+ L V CD T+GGGW V RR DGSVDF R+W Y+ GFG E EFW+GNEN+H LT +L ++++ R H Y TF + E YQL L G T D+ + H+G F+TYD+D+D C+ WWY +CYR+ L G+Y ++
Sbjct: 91 RNCRELLSQGATLSGWYHLCLPEGRALPVFCDMDTEGGGWLVFQRRQDGSVDFFRSWSSYRAGFGNQESEFWLGNENLHQLT----LQGNWELRVELEDFNGNRTFAH--YATFRLLGEVDHYQLAL-GKFSEGTAGDSLSL-HSGRPFTTYDADHDSSNSNCAVIVHGA-WWYASCYRSNLNGRYAVSE 271
The following BLAST results are available for this feature:
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