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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017174 ID=TCONS_00017174|Name=TCONS_00017174|organism=Clytia hemisphaerica|type=transcript|length=2313bpRun BLAST on NCBI protein sequence of TCONS_00017174-protein >TCONS_00017174-protein ID=TCONS_00017174-protein|Name=TCONS_00017174-protein|organism=Clytia hemisphaerica|type=polypeptide|length=689bp MVNLRTLSNILIVLYIVGIFSATNANSHTRLQKINTEAGRRDKVFKKGATRun BLAST on NCBI transcript from alignment at sc0000260:98877..113888- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00017174 ID=TCONS_00017174|Name=TCONS_00017174|organism=Clytia hemisphaerica|type=transcript|length=15012bp|location=Sequence derived from alignment at sc0000260:98877..113888- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000260:98877..113888- >TCONS_00017174 ID=TCONS_00017174|Name=TCONS_00017174|organism=Clytia hemisphaerica|type=CDS|length=18603bp|location=Sequence derived from alignment at sc0000260:98877..113888- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00017174 vs. Swiss-Prot (Human)
Match: CRUM2 (Protein crumbs homolog 2 OS=Homo sapiens GN=CRB2 PE=1 SV=2) HSP 1 Score: 102.064 bits (253), Expect = 4.960e-22 Identity = 62/159 (38.99%), Postives = 82/159 (51.57%), Query Frame = 2
Query: 1853 TKPCLNGGLIVPLGNGEIG--CVCKNGFYGPYCE-DFDYCSLKPCKNRGKCYPIDVAPRIQCTCLKQFYGKLCE-KVNPCFEHVCKNGGTCTHNGEGKTECVCKPGYNGDRCQY-IDSCLPSPCKNGGVCHQTVVDRLLNSGNFTCECP-IQFKGPLCQ 2311
T+PC +G L VP G G C C GF GP CE D D C+ +PC + C ++A R +C C + G CE +V+ C C +GG+C +G G CVC PGY G RCQ +D C PC +GG CH V F C+C ++G C+
Sbjct: 73 TQPCHHGALCVPQGPDPTGFRCYCVPGFQGPRCELDIDECASRPCHHGATCR--NLADRYECHCPLGYAGVTCEMEVDECASAPCLHGGSCL-DGVGSFRCVCAPGYGGTRCQLDLDECQSQPCAHGGTCHDLV-------NGFRCDCAGTGYEGTHCE 221 The following BLAST results are available for this feature:
BLAST of TCONS_00017174 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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