TCONS_00017160 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00017160
Unique Name	TCONS_00017160
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1859

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000260:340410..345403+

transcript sequence

>TCONS_00017160 ID=TCONS_00017160|Name=TCONS_00017160|organism=Clytia hemisphaerica|type=transcript|length=1859bp
AATAGTGAATGGTTAACAAATAAGCAAAAACATACAACTTAAaagcaaaa
tatattttatctGGGAAAATGGGAGATCTATTTACAGAGTATGAGAAAGA
CTTTGGTGTTTTATCAGCAGATATTGTTTCAAAAACTAACAAGATACCCA
ATCTTCATGGAGTTCCAAAAAGAACATTGATCGATGATGTTGAGCAGAAG
TTTGATGAGCTTCAAGAACTTCTTGAACAAATGGACCTAGAAGTTCGTGG
ATTACCAGGTGACCGCAAAAACGCGTCTTCCAGCCGGTTGAAGTCGTACA
AGGATGAATCTAAAACTTTGGAACAAAACTTTAAAAAGTCGAAGATATCA
ATGACAGATCTTGAGCACGCAAGAACAGAGCTGTTGGCTGGTGAAGACGG
AGGCCAATCTGAGGACCAGAGATCACGCCTTTTAGAAAACACTGAACGTG
TAGAAAGATCAAATCGAAGACTGGAAGAAGGCTACAGAGTTTGTATTGAA
ACAGaggAGCTTGGTgaagaaattttaacaaatttaagTCGTGATCGAGA
AAATATGACCAGGACTCGAGATAGGCTGCGGAATACCAATAACGATTTGT
CGAGTAGCTCAAGAATTCTCACTGGCATGATGAGGAGGGTAATCCAGAAC
CGGATGTTGATGTGTTTGGCAATTTTGATGGTTCTGGTTGTTATATGTGT
GGTGATCTATTATGCTTCACAAAAGTAGTGAACCCAAAAAATAACCCNTT
CTGGTTGTTATATGTGTGGTGATCTATTATGCTTCACAAAAGTAGCGAAC
CCAAAAAATAACCCACAATGGCTTCCTCAACAAGGTGCTGACTGGAGAGA
ATGGTGTCATGGCAACACAACGTGGTTTCTTTCAATCTCATTTTCTTTAC
CAAGTGAAATATAGAGCTGAAATGGAATTATTTTTCTGCTAGAGTTATGG
TTGATAATACTGACGAATCTATGTAGACCTAATAAATCTCATGCAAAGAT
TTAAATGTGCCTATTGGTAAAGACTGGTTGACATTAAACCTGGTGAAGGA
ACTATTCAATAGTTGTGGAAAACTACAACAAAACACTCTCCAAGTGAACT
tatttaaaaggaaaataaataaacttCAAATGGAATTTACttgaaaagct
gaagaaaatgaagaagatcaAAATCAGTAAGtctcattttatttttgatt
cttACTTATTTCTTCTATGATTTGAACAGGCCTTGTTTTGCTTGGCAAAC
TTCAAATCAATGACCCAAATCAAATTTTCGACCTACAAAAATTTGTACGC
CTGACGTATTTGAATATATTTCTCTTTGGGctctaggctacgtcatatct
tccttcgtttcgagcgtaaaactcctactcatGATCTCTCCAAAGTTTGT
TGACCTTTACATTTTCAAATTGATGCATTCATTTTTGCATTATTATGTTC
TGCCAGTCGTTTGATTTGGTTCTcgctaaaaaatataaattaacaGGGGG
TAAAAGTCCTTTTTAATTTTACACTAGTTgttcaggccatattttagaaa
ggcaaaaAAGTCACGTTTTCTAGTGTTTTACCAcgaaaaaggctgttttt
accaaaatattGGTACCttcaggaggggcagcgtcTGATGACTGGACGCC
AATAGGTTATGAAAAACGGCCggttgtttcaatttttttgaaatgaaatt
acccatttttttataattatgtAGTTTATAGAGAATTTTGTTCTTTAAAT
GataataattttaatatttattgctttttgatattatatatatttagtTA
TGTTACAAGAATTGTATATTAGGGTAattataaataataataattaatgT
TTCTTCGgt

Run BLAST on NCBI

transcript from alignment at sc0000260:340410..345403+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00017160 ID=TCONS_00017160|Name=TCONS_00017160|organism=Clytia hemisphaerica|type=transcript|length=4994bp|location=Sequence derived from alignment at sc0000260:340410..345403+ (Clytia hemisphaerica)
AATAGTGAATGGTTAACAAATAAGCAAAAACATACAACTTAAaagcaaaa
tatattttatctGGGAAAATGGGAGATCTATTTACAGAGTATGAGAAAGA
CTTTGGTGTTTTATCAGCAGATATTGTTTCAAAAACTAACAAGATACCCA
ATCTTCATGGAGGtatgttttttctaaaattaatgCTACATGTAAATTTC
TATAATATGATAAGGGTCGAcaaagaatttttcttcaaatcagaAAAGTG
TGCAAAATAATTATAGGATTTGCTTTTTGATGTTTAAACATCATGATCAT
TTGCGCTGGACTAATAGAGGACTTCTTAAAGGCAAAAGAATTTAATGTCt
actttcaatgatttttttaagattttcaagTACCAGTTCTAACATGAGAT
TTTTACAATTCCAATTATTAACAGATTTANatgatttttttaagattttc
aagTACCAGTTCTAACATGAGATTTTTACAATTCCAATTTTTAACAGATT
TAGAATTTATTAGttgcagcaaaacagaaatccAGTCCCTTCATGCATTA
ATAGTTTTTCCTTGGTcatttattcttataaataaatctaATCGCACTCA
AAGTCTTTTGTGGCACTTGTTTCTTTTCAGTTCCAAAAAGAACATTGATC
GATGATGTTGAGCAGAAGTTTGATGAGCTTCAAGAACTTGTAAGGAATGT
cttgtaaacaaaagaaaactattatttacttttttgccaattttcaatTT
GCTTCAAGTTGGTCTTGACTCAAACACTTTTAGACATCTAGCACATTGCA
AATATATTTGACTTTTCTTTAGAAACTGAATCCAGCAGATATctatttta
agtatttttacatgtaaaggACTTTAAACTTATTTAATGATTTATAATGC
TACTGTCTTACGATGAGTAGCTCTGACCAATTGAACATGATTGAGGTTGG
TTCATTCTGGTTATAGTTTAATAAATTCACAATCTTTACTGATTTCAATC
ATCACATCTCTTGTGTATTTTTTGTATGAGAACATCAATCACTCTTTAAA
TTATGCAGGACTAATACCTTGCTTAAAAGGTGTCATTATCATTTGAAAAA
CGTGCTCCTGTATAGAAAAGTGATAATATAGAAGTATATTCATAACATTA
TTTTCCACTTTCCATTTTTAGCTTGAACAAATGGACCTAGAAGTTCGTGG
ATTACCAGGTGACCGCAAAAACGCGTCTTCCAGCCGGTTGAAGTCGTACA
AGGATGAATCTAAAACTTTGGAACAAAACTTTGTAAGTATTGTTctaaaa
aagaattcaaaattcaaaattgtacAATCTCAGACTGAGTTTTTCTGTCT
CAGAAAAGTATAAGATAAAGCTTCTTTCgtcaaaatttggacaatatggg
ctaatttgttgtttaaatccaatttttgcgTGAGAGGAAGGCTTGGTTTA
AACTCCTGACAATAATCTGTTGGGCTAAAAGAGCTTATGTTTACACCAAG
GTGATTATTAAGATATTACACCAGCCTTTCTAAAAAAACTAACCGTAAAC
TAATACACATCATTTTTTGAGACACcctgtatatttatttttatatgatt
tttaaCTGATAGAAAAAGTCGAAGATATCAATGACAGATCTTGAGCACGC
AAGAACAGAGCTGTTGGCTGGTGAAGACGGAGGCCAATCTGAGGACCAGG
TACAATAactaaaaacataattttataataagaatgaaaatatatttctt
gTTTGGTTAAGatctgaaaatctttttctttataattccAAACTCGCACT
GAATGGTTTCAAAGTTTTGCAAGTTTTGCGACGTGTGATGTATATTGTGT
GATTTGGATAATGCATAAACCAGacagtaaaattttcttaaatatcTCTT
TTCAGAGATCACGCCTTTTAGAAAACACTGAACGTGTAGAAAGATCAAAT
CGAAGACTGGAAGAAGGCTACAGAGTTTGTATTGAAACAGGTTtgaatta
taaaattttaaacaaatattttgaaagaaaacgtATCAGTAATTTCTTTT
AGTTATACCAGGTTTTACTTCCATAATGTATACCTTTTTCTTATCTGTTA
TCTCAAAaagattgattttaaaaatattttcttcaacatTCTTGCGAtta
gtttaaaaatattttttttcttttttcttttttcagaggAGCTTGGTgaa
gaaattttaacaaatttaagTCGTGATCGAGAAAATATGACCAGGACTCG
AGATAGGGTATAAGTTTATAAGATTTTCTGACTGGTTAGAAATAAATACT
ATCAGGTCTAACAGTTTAAGAGTTTTTTCGAGAACTTTTGACCAAAAATC
TAAACCTAGATATTCGAAACATACGACCCTTTTTAAATACATACAACCCT
TGACTTCCATTCAAAACAGCTTTTTCTTCTCAATGACAGTATTAATCTAA
TCTATTGAGATGAGTGACAttgaagttttcatttttatcatttcattTCA
GCTGCGGAATACCAATAACGATTTGTCGAGTAGCTCAAGAATTCTCACTG
GCATGATGAGGAGGTATAGTTATTTTTTATCCGCAATAAACAGCGTATAT
ATTTCTGTCACATTTAACGACTAACTATTTAGTGCCAATACGTACCTTAT
TACACGTATATAAGTAGACATATGATTAACACGAATTaagaaatttcgtg
ttaattaaaacccctttaattaaaaccagccgtggtgtccttgaaaaagc
aaataaaattcatGTTCATTTTTTGCCTGTTAAAGCGCATTATTGGACTC
AGTTTGACAGCAAACTACTAAACTGTGGACTGAAATGAGATTCGAACTTT
CGTATTACTAGTGCAATTACTATAGGCAATCCAGTCCACACTGTCCACGT
TGTTAAAACTGGTTTTGTATCCGTCCCTCTTTGTGCATGGTAGGGTTTAG
AGCTTGTTGTAGGGCTAACCCAAATCAGTTTGGTTGATGGGTTTGGTTAT
CAATTTTATTCAGGCTTTTATGATGAGATATCCTGGATATTTTGATAGAA
TCTATAGTAGATTTAtacaataaattgaagttgagataagaattgtttga
tactcaaagtttcacgcaacttttcgtcacgatcttcagtcaaaaattct
atACAAAAAATTCGTTTCAAGTAGTAGATTTATAAAGGATTCTTTGTCTT
TAGGCCTTGTTTATCTGCTACCCACCTAAAAAGTCATCTGGTTATAatag
tacatgttttttcttttataagcataacgtttataagcatatacagaCTC
TATACTTTCGGTACCTAAataatggctctattgtttgaaaacaatagatt
gCTAAGTATAATGCGAGCATGATATAGGGATATACACTTGCCTACAAAAA
ACTGTTTCTCGTTGTTATGTGTAGGGTAATCCAGAACCGGATGTTGATGT
GTTTGGCAATTTTGATGGTTCTGGTTGTTATATGTGTGGTGATCTATTAT
GCTTCACAAAAGTAGTGAACCCAAAAAATAACCCNTTCTGGTTGTTATAT
GTGTGGTGATCTATTATGCTTCACAAAAGTAGCGAACCCAAAAAATAACC
CACAATGGCTTCCTCAACAAGGTGCTGACTGGAGAGAATGGTGTCATGGC
AACACAACGTGGTTTCTTTCAATCTCATTTTGTACAGAGTACAAAGACAG
CCTCCCCAATGGGGAGGGCTCGTATCATCAGAAAGACAACCTTTTTATAT
CTCGAGTTGAGTCGAATTAATTCCAACAGGAATTTTATTTGTTGCTTTGT
AAATGAAGAGGTGAATGAACGAATTAAATGTTGGCAAGGCAGGTCAAGAT
AGCATTGTGAACCAGAATAAATACCTCCTACAGCAGAGAGAACCAGAGGT
TAAATACTTAGATCACGAATTCAAAATCAACGAAATCATATAGTCTAGAT
GGATACCAaatgaaagttgataaaaaaacttgaaagacAAACGTCAGAAC
GTCGAACATTCTTGTGTTTTTCTCTACAGCTTTACCAAGTGAAATATAGA
GCTGAAATGGAATTATTTTTCTGCTAGAGTTATGGTTGATAATACTGACG
AATCTATGTAGACCTAATAAATCTCATGCAAAGATTTAAATGTGCCTATT
GGTAAAGACTGGTTGACATTAAACCTGGTGAAGGAACTATTCAATAGTTG
TGGAAAACTACAACAAAACACTCTCCAAGTGAACTtatttaaaaggaaaa
taaataaacttCAAATGGAATTTACttgaaaagctgaagaaaatgaagaa
gatcaAAATCAGTAAGtctcattttatttttgattcttACTTATTTCTTC
TATGATTTGAACAGGCCTTGTTTTGCTTGGCAAACTTCAAATCAATGACC
CAAATCAAATTTTCGACCTACAAAAATTTGTACGCCTGACGTATTTGAAT
ATATTTCTCTTTGGGctctaggctacgtcatatcttccttcgtttcgagc
gtaaaactcctactcatGATCTCTCCAAAGTTTGTTGACCTTTACATTTT
CAAATTGATGCATTCATTTTTGCATTATTATGTTCTGCCAGTCGTTTGAT
TTGGTTCTcgctaaaaaatataaattaacaGGGGGTAAAAGTCCTTTTTA
ATTTTACACTAGTTgttcaggccatattttagaaaggcaaaaAAGTCACG
TTTTCTAGTGTTTTACCAcgaaaaaggctgtttttaccaaaatattGGTA
CCttcaggaggggcagcgtcTGATGACTGGACGCCAATAGGTTATGAAAA
ACGGCCggttgtttcaatttttttgaaatgaaattacccatttttttata
attatgtAGTTTATAGAGAATTTTGTTCTTTAAATGataataattttaat
atttattgctttttgatattatatatatttagtTATGTTACAAGAATTGT
ATATTAGGGTAattataaataataataattaatgTTTCTTCGgt

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_009602	XLOC_009602	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000260	supercontig	sc0000260:340410..345403 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.02653	3.45259	0.790637	1.59335	3.26306	1.35422	4.44017	3.54049	2.35878	1.67617	0.539295	1.41167e-05	0.661916	0.333809	1.8571	0.972886	2.05241	1.93553	0.735563	1.28582	2.24413	2.33786	3.11637	2.33126	4.77776e-06	0.34499	3.76023	2.9383	5.40259	4.61161

Blast

[Close]

BLAST of TCONS_00017160 vs. Swiss-Prot (Human)
Match: VTI1A (Vesicle transport through interaction with t-SNAREs homolog 1A OS=Homo sapiens GN=VTI1A PE=1 SV=2)

HSP 1 Score: 139.043 bits (349), Expect = 2.833e-37
Identity = 102/195 (52.31%), Postives = 144/195 (73.85%), Query Frame = 3

Query:   69 MGDLFTEYEKDFGVLSADIVSKTNKIPNLHGVPKRTLIDDVEQKFXXXXXXXXXXXXXVRGLPGDRKNASSSRLKSYKDESKTLEQNFKKSKISMTDLEHARTELLAGEDGGQSEDQRSRLLENTERVERSNRRLEEGYRVCXXXXXXXXXXXXNLSRDRENMXXXXXXXXXXXXXXSSSSRILTGMMRRVIQNR 653
            M   F  YE+DF VL+A+I SK  ++P L    K+ ++ +VE++ +E +ELLEQMDLEVR +P   +   S+R++SYK E   LE +FK+S+I+ +D    R ELL G+DG  SE+QR+ LL+NTER+ERS+RRLE GY++ +ETE++G+E+L NLS DRE + R R+RLR T+ +L  SSRILTGM+RR+IQNR
Sbjct:    1 MSSDFEGYEQDFAVLTAEITSKIARVPRLPPDEKKQMVANVEKQLEEAKELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETDFKRSRIAYSD--EVRNELL-GDDGNSSENQRAHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDREKIQRARERLRETDANLGKSSRILTGMLRRIIQNR 192

The following BLAST results are available for this feature:

BLAST of TCONS_00017160 vs. Swiss-Prot (Human)

BLAST of TCONS_00017160 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
VTI1A	2.833e-37	52.31	Vesicle transport through interaction with t-SNARE...	[more]

You are here

TCONS_00017160 (transcript) - C. hemisphaerica