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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017149 ID=TCONS_00017149|Name=TCONS_00017149|organism=Clytia hemisphaerica|type=transcript|length=2487bp
CTCTAGGCCTTCTTCCTCAACTAGATCCTTAGGATCTCTCCAATGGGTAT
GGATAGATGATGGATATTCGGGAAGACTGTTGAATTTCGTCGGTGACGTA
GAAATAGACGATGATTCAATCTTCAGTTCGTCATCCTCCAATCTTGTTAA
TTTCCCTTTCTTGGTCAATAATTTTCCTCGGATTTTCTTAcgaatatttt
gtattttttcattcCGCTGTGATGCCGTTTGCTTTGACTTTCTCTTCTTG
GATGGGAATTTTTGAATACCTTTCTTGAAGAATTGAAGAAACTGTTTGTC
AATGGTCGATTTACGTTGCGCTAAATCCAAACTGTTTGAACTGGAACTCC
TCAATCTCGTGTGTTCGTCAAGGACGCTCCCTTCCAAAGCCGTTTTGAAG
GTCTGTACTGAAGCTGCGTGACTTAGTTTACGAACCCTGTTTTTCGAGAC
ACGGCTAGTAGGAACTATCTCGTAATCAAGACTTGTATCAAGAGATAAAT
CTGAGCGACTGGCTAATGAGATATCAGAGATATTATCGAACGACGAGGAT
TCACCTTCTTCCGTTGGGACTTTCTCACTCTCTTCAAACGTTTCACCTGA
CGCTAATAGTGTCCCTGAACTGACACTATGATCTGAGATATCAATCGGTT
CTGAGCAAGGTGCTAAGGAGTTATCAAGAGCTAGTGGATCAACAGTATAA
CTTTCAGTGTCAGCTTCAGCGTTACAGAAATGTTCAGCATGAAGACCGCA
TTCGTGTTCGTAAAATTTTGGCGTACCAATATTGATTCGGACAGTTTTAC
GACGTtcattttcacgtttttcaCGCTCCTTGAGTTCTTTCTCAGTGAAA
ACAACCTGTGCTCTTTCGTTTTGGAATGGACTTGCAAGATACGTCATTTC
AATACAAGTTGGACACGAAGGCGCTATTTCATAAAAGGCACCTTCCTCGC
CACTCTTATGCACTCTGACTATTTCATCTtcctcttttttattttcaata
cttttaGGTGTGACCGCAGTTGTCGTCGACGGGTTTACTGAAGGTGGTAC
TTGTGATTTACGTCCAAAATTCATGGTCACACTCCCGTCAATAGATTGTG
TGAAATTTCGAGCTTTCATTCCTTCAATGTGCATATCCATGGACGAGCAA
CTTATAGTTCGATCTCCTCTAAGACAAGGATCGATACAGTTTATAGTGGA
CATTTGTCGAAGCATGGCAGCTGAAAATTCAGGTACAGAGCTAACACGTG
CTTTCAACTGCTCTGTTAACTCATCCTGCTTCAAAGGCATACCGTAAAAA
CTTGGATGTCTGAAAATCTGATCTCTCGAAGGCGGGCATACCGCCCAGTC
TCCTTTTTCCTTGACTGGAGAATCAGTGACGTCATGATCATGCTCACTGT
GAGCTAGAGAGGGAGCTCGGCCGCTATCTATCGGCTCTATTTCCTCAATT
CCTTGACTCAGCTTCAAGTCTAGCTTCCCTTTTTTATTTCTCTCATGATC
TCTTGCGCTAGTTGAACCATAAACGGGGTAAGAGGTTTTCATATCTAGCT
TATCGAATCGAAACATATTTTTCGTTTGGTCGATATCAGAATCGTCCCCT
GACGAATCGTTcatattgaaaatctttttcgatTGTTTCTTTGCTTTAGG
TCGTGTGTGTGATTTCCGATTTCGCACTTTACCAGACGTTTTCTTGGGAG
GTGTTTTAGCTTTGATTAAATGTTCATGAGTGCTCTCGTAATTTGTTTCA
GGGCTACTAATATCGACATTTTCCATTGTTCTTGACTGGTCATTCTCAAG
CTCTTCACTTTCAATTTCCTTATAAGCATCTTCCCATTGTTTCAAAATAA
CCGGTAACGGTAGAGAAGGCTCCAACACATCAATAACAACCTCATTCACG
AAATGTGGATCAGTAAAAATTTGTACTAACGGTTCTAAACATTGTATGGC
TAGAATTTCACGTAATAGAAACCGTCCGCTTAGACAGGAGAACGTCTCAG
CGGGGACGTACTTTTGTAATAACATAtcaatcaatgtttttaaataatCT
AATTCAGATCCTTTGGACTGTGTCGCAACGTGAGGTACAACAGCCTCTTC
GTAAAGTTCAGATATCAGCGGCGCAAAATCTTCTTCGCGTAAATTCGGGT
ATTTCTTATGTACAATAGCTTGGCATTCGTCaaatgttttgatatgtttt
tgaAACACATTTATAAGGTTGACAGTCACATTTGGGAGACTTAGATCCTT
TAAGCTCTGGTGTAATTCAACTGTTATATGTTCAATTACTATTCGTGTTT
CTTCTAAAAAATCTTTCTCATCAGGTCCGAGATATAAATACCATGATTCA
ACAAAGTCACGCAATATGGATGAGATGTAGCGGTCGAGTATTTTCGCAAT
GGGTTTTGGGAACGATCGTAAGCCATCATGTTTTCTGTTTGCAGATGTTG
GCTGTTGTTGATGGGTGTGGTCATTGGTTTTACCTGA Run BLAST on NCBI transcript from alignment at sc0000260:187214..190260+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017149 ID=TCONS_00017149|Name=TCONS_00017149|organism=Clytia hemisphaerica|type=transcript|length=3047bp|location=Sequence derived from alignment at sc0000260:187214..190260+ (Clytia hemisphaerica)
CTCTAGGCCTTCTTCCTCAACTAGATCCTTAGGATCTCTCCAATGGGTAT
GGATAGATGATGGATATTCGGGAAGACTGTTGAATTTCGTCGGTGACGTA
GAAATAGACGATGATTCAATCTTCAGTTCGTCATCCTCCAATCTTGTTAA
TTTCCCTTTCTTGGTCAATAATTTTCCTCGGATTTTCTTAcgaatatttt
gtattttttcattcCGCTGTGATGCCGTTTGCTTTGACTTTCTCTTCTTG
GATGGGAATTTTTGAATACCTTAATAAAGCgtaaagatttaaaagaaaac
aattgCATGTTTGATCTAAAAGCATTAGCAGCAGAGTATGCAGGTTACAA
CCAAAAGATACGTACtaagcattgagtttcaagcccgaagggctagaggt
gagactcctggatgggaaatgaaaccatttATTTCCTATTCAGAACGCCC
GCcagtagtttttacacaaacaccggattgaaactaaaatctatagctag
atttcaaaaaatgtagtcctcctaaacaaaggaaccgctagatacaatcc
gtcgttaTGATTATGGCGCGTTCTATGTGCTTTTTGGATGGGAAGtaagt
agcttcaatttctcttgcctgagaagggttaaaatTTCGTAAAAGAAATC
GAGTATTATTATGCAGGTCAGAAGTCACGATAACGATTTtttgaatcttt
aaaaaataagggAAATCCTGGACTCGCAAACGTTATTTCGATGCTAATTT
AAAGTTATATATCGACGATAAATTATGGATCTTAGATGGATTTTGAAACA
ACTTTATATTCCAACAAAGAAGAACATACCTTTCTTGAAGAATTGAAGAA
ACTGTTTGTCAATGGTCGATTTACGTTGCGCTAAATCCAAACTGTTTGAA
CTGGAACTCCTCAATCTCGTGTGTTCGTCAAGGACGCTCCCTTCCAAAGC
CGTTTTGAAGGTCTGTACTGAAGCTGCGTGACTTAGTTTACGAACCCTGT
TTTTCGAGACACGGCTAGTAGGAACTATCTCGTAATCAAGACTTGTATCA
AGAGATAAATCTGAGCGACTGGCTAATGAGATATCAGAGATATTATCGAA
CGACGAGGATTCACCTTCTTCCGTTGGGACTTTCTCACTCTCTTCAAACG
TTTCACCTGACGCTAATAGTGTCCCTGAACTGACACTATGATCTGAGATA
TCAATCGGTTCTGAGCAAGGTGCTAAGGAGTTATCAAGAGCTAGTGGATC
AACAGTATAACTTTCAGTGTCAGCTTCAGCGTTACAGAAATGTTCAGCAT
GAAGACCGCATTCGTGTTCGTAAAATTTTGGCGTACCAATATTGATTCGG
ACAGTTTTACGACGTtcattttcacgtttttcaCGCTCCTTGAGTTCTTT
CTCAGTGAAAACAACCTGTGCTCTTTCGTTTTGGAATGGACTTGCAAGAT
ACGTCATTTCAATACAAGTTGGACACGAAGGCGCTATTTCATAAAAGGCA
CCTTCCTCGCCACTCTTATGCACTCTGACTATTTCATCTtcctctttttt
attttcaatacttttaGGTGTGACCGCAGTTGTCGTCGACGGGTTTACTG
AAGGTGGTACTTGTGATTTACGTCCAAAATTCATGGTCACACTCCCGTCA
ATAGATTGTGTGAAATTTCGAGCTTTCATTCCTTCAATGTGCATATCCAT
GGACGAGCAACTTATAGTTCGATCTCCTCTAAGACAAGGATCGATACAGT
TTATAGTGGACATTTGTCGAAGCATGGCAGCTGAAAATTCAGGTACAGAG
CTAACACGTGCTTTCAACTGCTCTGTTAACTCATCCTGCTTCAAAGGCAT
ACCGTAAAAACTTGGATGTCTGAAAATCTGATCTCTCGAAGGCGGGCATA
CCGCCCAGTCTCCTTTTTCCTTGACTGGAGAATCAGTGACGTCATGATCA
TGCTCACTGTGAGCTAGAGAGGGAGCTCGGCCGCTATCTATCGGCTCTAT
TTCCTCAATTCCTTGACTCAGCTTCAAGTCTAGCTTCCCTTTTTTATTTC
TCTCATGATCTCTTGCGCTAGTTGAACCATAAACGGGGTAAGAGGTTTTC
ATATCTAGCTTATCGAATCGAAACATATTTTTCGTTTGGTCGATATCAGA
ATCGTCCCCTGACGAATCGTTcatattgaaaatctttttcgatTGTTTCT
TTGCTTTAGGTCGTGTGTGTGATTTCCGATTTCGCACTTTACCAGACGTT
TTCTTGGGAGGTGTTTTAGCTTTGATTAAATGTTCATGAGTGCTCTCGTA
ATTTGTTTCAGGGCTACTAATATCGACATTTTCCATTGTTCTTGACTGGT
CATTCTCAAGCTCTTCACTTTCAATTTCCTTATAAGCATCTTCCCATTGT
TTCAAAATAACCGGTAACGGTAGAGAAGGCTCCAACACATCAATAACAAC
CTCATTCACGAAATGTGGATCAGTAAAAATTTGTACTAACGGTTCTAAAC
ATTGTATGGCTAGAATTTCACGTAATAGAAACCGTCCGCTTAGACAGGAG
AACGTCTCAGCGGGGACGTACTTTTGTAATAACATAtcaatcaatgtttt
taaataatCTAATTCAGATCCTTTGGACTGTGTCGCAACGTGAGGTACAA
CAGCCTCTTCGTAAAGTTCAGATATCAGCGGCGCAAAATCTTCTTCGCGT
AAATTCGGGTATTTCTTATGTACAATAGCTTGGCATTCGTCaaatgtttt
gatatgtttttgaAACACATTTATAAGGTTGACAGTCACATTTGGGAGAC
TTAGATCCTTTAAGCTCTGGTGTAATTCAACTGTTATATGTTCAATTACT
ATTCGTGTTTCTTCTAAAAAATCTTTCTCATCAGGTCCGAGATATAAATA
CCATGATTCAACAAAGTCACGCAATATGGATGAGATGTAGCGGTCGAGTA
TTTTCGCAATGGGTTTTGGGAACGATCGTAAGCCATCATGTTTTCTGTTT
GCAGATGTTGGCTGTTGTTGATGGGTGTGGTCATTGGTTTTACCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017149-exon-sc0000260-1491911889:187214..187478 | TCONS_00017149-exon-sc0000260-1491911889:187214..187478 | Clytia hemisphaerica | exon |
| TCONS_00017149-exon-sc0000260-1510915933:187214..187478 | TCONS_00017149-exon-sc0000260-1510915933:187214..187478 | Clytia hemisphaerica | exon |
| TCONS_00017149-exon-sc0000260-1575043694:187214..187478 | TCONS_00017149-exon-sc0000260-1575043694:187214..187478 | Clytia hemisphaerica | exon |
| TCONS_00017149-exon-sc0000260-1491911889:188039..190260 | TCONS_00017149-exon-sc0000260-1491911889:188039..190260 | Clytia hemisphaerica | exon |
| TCONS_00017149-exon-sc0000260-1510915933:188039..190260 | TCONS_00017149-exon-sc0000260-1510915933:188039..190260 | Clytia hemisphaerica | exon |
| TCONS_00017149-exon-sc0000260-1575043694:188039..190260 | TCONS_00017149-exon-sc0000260-1575043694:188039..190260 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000260 | supercontig | sc0000260:187214..190260 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR003114 | Phox_assoc |
Blast
The following BLAST results are available for this feature:
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