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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017138 ID=TCONS_00017138|Name=TCONS_00017138|organism=Clytia hemisphaerica|type=transcript|length=993bp
gaataaatgaaaaaagaacaaattcCACAATGGACTTATATTCGATCAAG
ATTCATATTTCACTTGTCTTTCTCTGGATTTTGATTTCTGGATTACTCCT
ACTGTTATCCCCTATCATCCTATTAATGTTGGTTCTTCGATCTTCGGAAA
CTATATTTTATAAGAGACTTTATGGAGGCTCAAAACTAAATGCACCGGAT
TTGATATGGACCATGAAACGCAAGGAACAGTTAGGTGTTATCATCGGGAT
GTTGCATTTAGATGGTTCGTTGGATCTCCCGCAATGTAAGGACATGCTCC
TTAAGAGACTAGTCAATAAAAGGTTGAATGGGAAACTGCTTTATCCTAGA
GTTACCCAATATATTTCTCCAGGATGGATAAACTATTACTGGCTTGCAGA
CCCTGATTTTAATATCGATAACCATGTAGCGTACTTGACACAGACTCCAA
TATCATCTGACAAGAAATTGAAGGAAATAATCGAGGGTTTATTTTGCGCA
CCTTTTAAAGGGAAATCACCTTGGGAATTTTTATTGGTTCCTTATAAGAA
GGATAATGAAGAATCGAAGACGATTATATTGGTTCGTTTGGAGCACTCTA
TTGGTGATGGTTCATCCTTGGCTTACTTTCTGATGAACTCGTTGGCTGAC
CAAGAACCTAACATAGAATCCGAGGAAAGTCAATCAGCAACCTCAAAGGA
CCACAAAGTCAGTAAATTTTCCTTAGGTGCAACTTTTTTCAGCTCTTTAA
TTGGCCTTTGGTATCTTCCTCTTGTCTATGTAAAGAATTTGACCAGAAAA
ACTGATCAGAATATTTTACATACTCCACATCTCACTTGCAACAAGAAGGT
TGATTGGATTCTACCCATCCCACTGGAAACAGTCAAATCTATCAAAAATG
CGCTAAAATCAACTGTTAATGATGTCCTAGTTGGTGTTTTATCGAAATCT
AttgatgattattttcaatCCCAAGGTGCACCTGGAAAGTCCT Run BLAST on NCBI protein sequence of TCONS_00017138-protein >TCONS_00017138-protein ID=TCONS_00017138-protein|Name=TCONS_00017138-protein|organism=Clytia hemisphaerica|type=polypeptide|length=330bp
INEKRTNSTMDLYSIKIHISLVFLWILISGLLLLLSPIILLMLVLRSSET
IFYKRLYGGSKLNAPDLIWTMKRKEQLGVIIGMLHLDGSLDLPQCKDMLL
KRLVNKRLNGKLLYPRVTQYISPGWINYYWLADPDFNIDNHVAYLTQTPI
SSDKKLKEIIEGLFCAPFKGKSPWEFLLVPYKKDNEESKTIILVRLEHSI
GDGSSLAYFLMNSLADQEPNIESEESQSATSKDHKVSKFSLGATFFSSLI
GLWYLPLVYVKNLTRKTDQNILHTPHLTCNKKVDWILPIPLETVKSIKNA
LKSTVNDVLVGVLSKSIDDYFQSQGAPGKS Run BLAST on NCBI transcript from alignment at sc0000259:249478..250470 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017138 ID=TCONS_00017138|Name=TCONS_00017138|organism=Clytia hemisphaerica|type=transcript|length=993bp|location=Sequence derived from alignment at sc0000259:249478..250470 (Clytia hemisphaerica)
AGGACTTTCCAGGTGCACCTTGGGattgaaaataatcatcaaTAGATTTC
GATAAAACACCAACTAGGACATCATTAACAGTTGATTTTAGCGCATTTTT
GATAGATTTGACTGTTTCCAGTGGGATGGGTAGAATCCAATCAACCTTCT
TGTTGCAAGTGAGATGTGGAGTATGTAAAATATTCTGATCAGTTTTTCTG
GTCAAATTCTTTACATAGACAAGAGGAAGATACCAAAGGCCAATTAAAGA
GCTGAAAAAAGTTGCACCTAAGGAAAATTTACTGACTTTGTGGTCCTTTG
AGGTTGCTGATTGACTTTCCTCGGATTCTATGTTAGGTTCTTGGTCAGCC
AACGAGTTCATCAGAAAGTAAGCCAAGGATGAACCATCACCAATAGAGTG
CTCCAAACGAACCAATATAATCGTCTTCGATTCTTCATTATCCTTCTTAT
AAGGAACCAATAAAAATTCCCAAGGTGATTTCCCTTTAAAAGGTGCGCAA
AATAAACCCTCGATTATTTCCTTCAATTTCTTGTCAGATGATATTGGAGT
CTGTGTCAAGTACGCTACATGGTTATCGATATTAAAATCAGGGTCTGCAA
GCCAGTAATAGTTTATCCATCCTGGAGAAATATATTGGGTAACTCTAGGA
TAAAGCAGTTTCCCATTCAACCTTTTATTGACTAGTCTCTTAAGGAGCAT
GTCCTTACATTGCGGGAGATCCAACGAACCATCTAAATGCAACATCCCGA
TGATAACACCTAACTGTTCCTTGCGTTTCATGGTCCATATCAAATCCGGT
GCATTTAGTTTTGAGCCTCCATAAAGTCTCTTATAAAATATAGTTTCCGA
AGATCGAAGAACCAACATTAATAGGATGATAGGGGATAACAGTAGGAGTA
ATCCAGAAATCAAAATCCAGAGAAAGACAAGTGAAATATGAATCTTGATC
GAATATAAGTCCATTGTGgaatttgttcttttttcatttattc Coding sequence (CDS) from alignment at sc0000259:249478..250470 >TCONS_00017138 ID=TCONS_00017138|Name=TCONS_00017138|organism=Clytia hemisphaerica|type=CDS|length=990bp|location=Sequence derived from alignment at sc0000259:249478..250470 (Clytia hemisphaerica)
GGACTTTCCAGGTGCACCTTGGGattgaaaataatcatcaaTAGATTTCG
ATAAAACACCAACTAGGACATCATTAACAGTTGATTTTAGCGCATTTTTG
ATAGATTTGACTGTTTCCAGTGGGATGGGTAGAATCCAATCAACCTTCTT
GTTGCAAGTGAGATGTGGAGTATGTAAAATATTCTGATCAGTTTTTCTGG
TCAAATTCTTTACATAGACAAGAGGAAGATACCAAAGGCCAATTAAAGAG
CTGAAAAAAGTTGCACCTAAGGAAAATTTACTGACTTTGTGGTCCTTTGA
GGTTGCTGATTGACTTTCCTCGGATTCTATGTTAGGTTCTTGGTCAGCCA
ACGAGTTCATCAGAAAGTAAGCCAAGGATGAACCATCACCAATAGAGTGC
TCCAAACGAACCAATATAATCGTCTTCGATTCTTCATTATCCTTCTTATA
AGGAACCAATAAAAATTCCCAAGGTGATTTCCCTTTAAAAGGTGCGCAAA
ATAAACCCTCGATTATTTCCTTCAATTTCTTGTCAGATGATATTGGAGTC
TGTGTCAAGTACGCTACATGGTTATCGATATTAAAATCAGGGTCTGCAAG
CCAGTAATAGTTTATCCATCCTGGAGAAATATATTGGGTAACTCTAGGAT
AAAGCAGTTTCCCATTCAACCTTTTATTGACTAGTCTCTTAAGGAGCATG
TCCTTACATTGCGGGAGATCCAACGAACCATCTAAATGCAACATCCCGAT
GATAACACCTAACTGTTCCTTGCGTTTCATGGTCCATATCAAATCCGGTG
CATTTAGTTTTGAGCCTCCATAAAGTCTCTTATAAAATATAGTTTCCGAA
GATCGAAGAACCAACATTAATAGGATGATAGGGGATAACAGTAGGAGTAA
TCCAGAAATCAAAATCCAGAGAAAGACAAGTGAAATATGAATCTTGATCG
AATATAAGTCCATTGTGgaatttgttcttttttcatttat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017138-exon-sc0000259-1491911889:249478..250470 | TCONS_00017138-exon-sc0000259-1491911889:249478..250470 | Clytia hemisphaerica | exon |
| TCONS_00017138-exon-sc0000259-1510915933:249478..250470 | TCONS_00017138-exon-sc0000259-1510915933:249478..250470 | Clytia hemisphaerica | exon |
| TCONS_00017138-exon-sc0000259-1575043694:249478..250470 | TCONS_00017138-exon-sc0000259-1575043694:249478..250470 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000259 | supercontig | sc0000259:249478..250470 . |
Blast
The following BLAST results are available for this feature:
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