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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017131 ID=TCONS_00017131|Name=TCONS_00017131|organism=Clytia hemisphaerica|type=transcript|length=1592bp
ctccagcgtGTTCCACCTCAACACAATGAGGAGTATTTTCGGTTGGTATA
TATTTATTCCTAtaacaaagtcaaaatttacattaaaatgcattcaaaaa
ctttaaatttgccGATAAATTTCTCCAATACAACTTCCATTTCTCTGTGC
ACTCAGAATAAATgagctaagtacacattgtCTTTGGTCAGTGAAAAAAA
GCTTTGATTTCTGAGATTTAAGTTTCAGTTTTGATGCCATCATTTCGTTA
ACAATGGTCGAGGTTCCTTCGAAATCAGAATTCATAAAAATTCGAATTTC
TGGTAATAAACGTGTCGCTAATCTCCTCGAAATCATCCAAGCTCCATTTG
AATTGAAAGTCTGAAAACTCTTAAGAAACGGTTTCTTCTTATCCTCTTCA
GCTTTATTTGAAGTTTGAGAGCTCAATGTATTGATGTATAAATCTTTGTA
ATTCTTTTGCTGAAATTTATGTATACCTTTATAGAGTGCTTGGACattca
aaaacatattttcacGCATGACCAATAGTTTCTCAAACGAGCATCCATTT
AAAGCCCAGTATAAGGCACCATATAATGCTTGCATTGTCTTAGAATTCTT
AGCATGTACACCAAGCAAATCATTTCTCATAACTTCATCAAAGAACGCTT
TATCCTTTCCAGCCTTATCAAGTGGCCGCCCAACGATGTATATAACACGC
CAACGAAGTTCTGTTTCAGGTGATTTCAAAGCACCCCACGTCTTACGTAT
AGTGTTACGTAAATCTTGGTTCCCGTTTTCACTGAACACCAAAATCAATA
TCTTGTAAGATGTTGAAGAACCGCACATGTGTATATCCCTATGTGTAAAA
GTCATCGGGAACTCTGGATACTTTTTGTCAAGGGCTAAGTCACCTGAAGA
TCTCGTCATATAGAATGACGACTTGATTCGAATCTCAAATTTTTGACGTC
TTTCCAAGACACGGCGTAAATCTTTGATTTCTTTCGTAAGTCGTTTTACT
ACACGTTTGGTATCAACGTTAGATGATTGATACATTGGTTTTCGACTCTG
GAGATCTTGGTAATATGACCAATTCATTTCAACATAGACACGTTTTTCTT
TCATAAGTTGCTGGTAAAAAACTGTGAATGAGAAAATTCCAGCCACTAAC
GTGAATAGGTATTGAAACCTTGCTGCTGTAAGCTTCATGCTGTGtaaatg
tttttgcttttatCTCTGGAAGAGTTAGAATCGAAAATTAATACAAAAAC
CATCTCAGATGTAGTAACAAGTTCAATTTCAAGGACGGATAACCGTATTG
GTGGAAAATATTTCATACTATGTTTTACCCCTAATTTCCCCGTTGATGTC
TCCTGTAGATTTTTTTCAGATTCGTTTTCGGAATACCATAACGCATAAGC
CTCTGTTGTCATAGGAACAAGAAATACCAGTCGGGATCATACTCTGGAGT
GTAGTCATCcttaatttcgaaaaacttGACATGAGCACCAAGAAGTAATC
CAATACGCATCTCAAATGCATTTTTATCTCGACTTCATCTCTTCATTTGA
ATTTTCTGTATCtcaataaaaaattccaaacgGTCCCTCAAG Run BLAST on NCBI protein sequence of TCONS_00017131-protein >TCONS_00017131-protein ID=TCONS_00017131-protein|Name=TCONS_00017131-protein|organism=Clytia hemisphaerica|type=polypeptide|length=361bp
MKLTAARFQYLFTLVAGIFSFTVFYQQLMKEKRVYVEMNWSYYQDLQSRK
PMYQSSNVDTKRVVKRLTKEIKDLRRVLERRQKFEIRIKSSFYMTRSSGD
LALDKKYPEFPMTFTHRDIHMCGSSTSYKILILVFSENGNQDLRNTIRKT
WGALKSPETELRWRVIYIVGRPLDKAGKDKAFFDEVMRNDLLGVHAKNSK
TMQALYGALYWALNGCSFEKLLVMRENMFLNVQALYKGIHKFQQKNYKDL
YINTLSSQTSNKAEEDKKKPFLKSFQTFNSNGAWMISRRLATRLLPEIRI
FMNSDFEGTSTIVNEMMASKLKLKSQKSKLFFTDQRQCVLSSFILSAQRN
GSCIGEIYRQI Run BLAST on NCBI transcript from alignment at sc0000259:30604..32195 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017131 ID=TCONS_00017131|Name=TCONS_00017131|organism=Clytia hemisphaerica|type=transcript|length=1592bp|location=Sequence derived from alignment at sc0000259:30604..32195 (Clytia hemisphaerica)
CTTGAGGGACcgtttggaattttttattgaGATACAGAAAATTCAAATGA
AGAGATGAAGTCGAGATAAAAATGCATTTGAGATGCGTATTGGATTACTT
CTTGGTGCTCATGTCaagtttttcgaaattaagGATGACTACACTCCAGA
GTATGATCCCGACTGGTATTTCTTGTTCCTATGACAACAGAGGCTTATGC
GTTATGGTATTCCGAAAACGAATCTGAAAAAAATCTACAGGAGACATCAA
CGGGGAAATTAGGGGTAAAACATAGTATGAAATATTTTCCACCAATACGG
TTATCCGTCCTTGAAATTGAACTTGTTACTACATCTGAGATGGTTTTTGT
ATTAATTTTCGATTCTAACTCTTCCAGAGataaaagcaaaaacatttaCA
CAGCATGAAGCTTACAGCAGCAAGGTTTCAATACCTATTCACGTTAGTGG
CTGGAATTTTCTCATTCACAGTTTTTTACCAGCAACTTATGAAAGAAAAA
CGTGTCTATGTTGAAATGAATTGGTCATATTACCAAGATCTCCAGAGTCG
AAAACCAATGTATCAATCATCTAACGTTGATACCAAACGTGTAGTAAAAC
GACTTACGAAAGAAATCAAAGATTTACGCCGTGTCTTGGAAAGACGTCAA
AAATTTGAGATTCGAATCAAGTCGTCATTCTATATGACGAGATCTTCAGG
TGACTTAGCCCTTGACAAAAAGTATCCAGAGTTCCCGATGACTTTTACAC
ATAGGGATATACACATGTGCGGTTCTTCAACATCTTACAAGATATTGATT
TTGGTGTTCAGTGAAAACGGGAACCAAGATTTACGTAACACTATACGTAA
GACGTGGGGTGCTTTGAAATCACCTGAAACAGAACTTCGTTGGCGTGTTA
TATACATCGTTGGGCGGCCACTTGATAAGGCTGGAAAGGATAAAGCGTTC
TTTGATGAAGTTATGAGAAATGATTTGCTTGGTGTACATGCTAAGAATTC
TAAGACAATGCAAGCATTATATGGTGCCTTATACTGGGCTTTAAATGGAT
GCTCGTTTGAGAAACTATTGGTCATGCgtgaaaatatgtttttgaatGTC
CAAGCACTCTATAAAGGTATACATAAATTTCAGCAAAAGAATTACAAAGA
TTTATACATCAATACATTGAGCTCTCAAACTTCAAATAAAGCTGAAGAGG
ATAAGAAGAAACCGTTTCTTAAGAGTTTTCAGACTTTCAATTCAAATGGA
GCTTGGATGATTTCGAGGAGATTAGCGACACGTTTATTACCAGAAATTCG
AATTTTTATGAATTCTGATTTCGAAGGAACCTCGACCATTGTTAACGAAA
TGATGGCATCAAAACTGAAACTTAAATCTCAGAAATCAAAGCTTTTTTTC
ACTGACCAAAGacaatgtgtacttagctcATTTATTCTGAGTGCACAGAG
AAATGGAAGTTGTATTGGAGAAATTTATCggcaaatttaaagtttttgaa
tgcattttaatgtaaattttgactttgttaTAGGAATAAATATATACCAA
CCGAAAATACTCCTCATTGTGTTGAGGTGGAACacgctggag Coding sequence (CDS) from alignment at sc0000259:30604..32195 >TCONS_00017131 ID=TCONS_00017131|Name=TCONS_00017131|organism=Clytia hemisphaerica|type=CDS|length=1086bp|location=Sequence derived from alignment at sc0000259:30604..32195 (Clytia hemisphaerica)
ATGAAGCTTACAGCAGCAAGGTTTCAATACCTATTCACGTTAGTGGCTGG
AATTTTCTCATTCACAGTTTTTTACCAGCAACTTATGAAAGAAAAACGTG
TCTATGTTGAAATGAATTGGTCATATTACCAAGATCTCCAGAGTCGAAAA
CCAATGTATCAATCATCTAACGTTGATACCAAACGTGTAGTAAAACGACT
TACGAAAGAAATCAAAGATTTACGCCGTGTCTTGGAAAGACGTCAAAAAT
TTGAGATTCGAATCAAGTCGTCATTCTATATGACGAGATCTTCAGGTGAC
TTAGCCCTTGACAAAAAGTATCCAGAGTTCCCGATGACTTTTACACATAG
GGATATACACATGTGCGGTTCTTCAACATCTTACAAGATATTGATTTTGG
TGTTCAGTGAAAACGGGAACCAAGATTTACGTAACACTATACGTAAGACG
TGGGGTGCTTTGAAATCACCTGAAACAGAACTTCGTTGGCGTGTTATATA
CATCGTTGGGCGGCCACTTGATAAGGCTGGAAAGGATAAAGCGTTCTTTG
ATGAAGTTATGAGAAATGATTTGCTTGGTGTACATGCTAAGAATTCTAAG
ACAATGCAAGCATTATATGGTGCCTTATACTGGGCTTTAAATGGATGCTC
GTTTGAGAAACTATTGGTCATGCgtgaaaatatgtttttgaatGTCCAAG
CACTCTATAAAGGTATACATAAATTTCAGCAAAAGAATTACAAAGATTTA
TACATCAATACATTGAGCTCTCAAACTTCAAATAAAGCTGAAGAGGATAA
GAAGAAACCGTTTCTTAAGAGTTTTCAGACTTTCAATTCAAATGGAGCTT
GGATGATTTCGAGGAGATTAGCGACACGTTTATTACCAGAAATTCGAATT
TTTATGAATTCTGATTTCGAAGGAACCTCGACCATTGTTAACGAAATGAT
GGCATCAAAACTGAAACTTAAATCTCAGAAATCAAAGCTTTTTTTCACTG
ACCAAAGacaatgtgtacttagctcATTTATTCTGAGTGCACAGAGAAAT
GGAAGTTGTATTGGAGAAATTTATCggcaaatttaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017131-exon-sc0000259-1491911889:30604..32195 | TCONS_00017131-exon-sc0000259-1491911889:30604..32195 | Clytia hemisphaerica | exon |
| TCONS_00017131-exon-sc0000259-1510915933:30604..32195 | TCONS_00017131-exon-sc0000259-1510915933:30604..32195 | Clytia hemisphaerica | exon |
| TCONS_00017131-exon-sc0000259-1575043694:30604..32195 | TCONS_00017131-exon-sc0000259-1575043694:30604..32195 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000259 | supercontig | sc0000259:30604..32195 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002659 | Glyco_trans_31 |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008378 | galactosyltransferase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006486 | protein glycosylation |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006486 |
protein glycosylation |
| cellular_component |
GO:0016020 |
membrane |
| molecular_function |
GO:0008378 |
galactosyltransferase activity |
Blast
The following BLAST results are available for this feature:
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