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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017129 ID=TCONS_00017129|Name=TCONS_00017129|organism=Clytia hemisphaerica|type=transcript|length=1326bp
AATAACGTCGTGTGCTTGCTGGGTACAAGGATAAATAAGTCGAGTTGAGT
TAATTAAGACAGTGTCTTATTTGCATTATCCATTATCTGATATTGTACAA
GATCCAAACACATCGAATGAGGCATCACACTGATGACGTAATCATTCTGA
AATTCACACTTTGACTCACTCATAAAGTTCGAATATCTTATATTCTTACT
CTTGAAATACTCGACATATCTTAATAAAACATCATAGTTTATAGGCGAGA
CTGAGCCAGTATGTATTTTCATTAATGGCAATGCTTTTTGCAAAGCAGAT
CTTGATATCAGCAATGCAGTACTCTGATAAGCATCGGTTAAGTCTTGAAC
TGTCTCCCGTATGAAATAGTTTTGATGACTGAGTCGATTCAAGTCTTGTA
ACATAACGTACATTTTGGCCATATTTGGTACCATATGAGGGCGTATTACA
AGAAGATTTTCGTAGAAGCATCCATTGTGCACCCAATGTAGCGCCCCATA
AAGGGCGCCCATAGTATGGGTGTTAAGGGCGTGAATATTCACCATATCAC
GCTTGAAGATTGCTTCGTTGATGTGGTAAACATCCGACGCAGTTTCGCCA
TGATCACGCCCGATTACAAACACCATCCGCCATttgatttcaatgttttt
ctCTTTCGAGGCTTCTTTTATGGTTTTCGAccaaacatttcgaaattttt
ctcTAGCATCTTTTTCCTCGTGACCAGTTAAAACTAGAACCATCAATTTT
AAAGTCTGTCTCCCACATAATAAAAAATCTTGGTTTTCATACACCATAGC
GGAATCAGGTGTTTTGATTTTTGCCAATGCTTTCGAAGGTGTCTGGTTAA
ACAATTTACGACTTTCCTTCATTCTTGCAATATTCTTTTGTACGTCATTT
AAGAGTCTTTGTAAACGAGATGTTTCGTTGCGTAACCTCTCAGTGTCCAA
AGATGATCTTTCGTCCACCTTAACAATAACATTTGAATTTGCATCCAAGA
ATGTTACAGCCTTACTACTCGATTTGGTTAAGGTGACATCCATGTACATA
TCTCCATGATGCTTAAACTTGATTGAGAGTGCCATTGTCATGAAGAGACA
TGCGCAGAAAACACCCAGGGCTACTGCAGACCATTTTTGTCTCGTGTTGT
TTGAAATTCGTAGCTTATTCATATTTCCAAGATATTTTTCNCCTTGTGTT
ATTTGAAATTCGTAGCTTATTCATATTTCCAAGTTATTTTTCATAACCac
gataaaaaaaatcaaatgacaAACTAATACTTTAGTCTCTCTACCGTATC
CTACTTGCTATATTCGTTTTTTGAAA Run BLAST on NCBI protein sequence of TCONS_00017129-protein >TCONS_00017129-protein ID=TCONS_00017129-protein|Name=TCONS_00017129-protein|organism=Clytia hemisphaerica|type=polypeptide|length=372bp
MNKLRISNNTRQKWSAVALGVFCACLFMTMALSIKFKHHGDMYMDVTLTK
SSSKAVTFLDANSNVIVKVDERSSLDTERLRNETSRLQRLLNDVQKNIAR
MKESRKLFNQTPSKALAKIKTPDSAMVYENQDFLLCGRQTLKLMVLVLTG
HEEKDAREKFRNVWSKTIKEASKEKNIEIKWRMVFVIGRDHGETASDVYH
INEAIFKRDMVNIHALNTHTMGALYGALHWVHNGCFYENLLVIRPHMVPN
MAKMYVMLQDLNRLSHQNYFIRETVQDLTDAYQSTALLISRSALQKALPL
MKIHTGSVSPINYDVLLRYVEYFKSKNIRYSNFMSESKCEFQNDYVISVM
PHSMCLDLVQYQIMDNANKTLS Run BLAST on NCBI transcript from alignment at sc0000259:22915..24240 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017129 ID=TCONS_00017129|Name=TCONS_00017129|organism=Clytia hemisphaerica|type=transcript|length=1326bp|location=Sequence derived from alignment at sc0000259:22915..24240 (Clytia hemisphaerica)
TTTCAAAAAACGAATATAGCAAGTAGGATACGGTAGAGAGACTAAAGTAT
TAGTTtgtcatttgattttttttatcgtGGTTATGAAAAATAACTTGGAA
ATATGAATAAGCTACGAATTTCAAATAACACAAGGNGAAAAATATCTTGG
AAATATGAATAAGCTACGAATTTCAAACAACACGAGACAAAAATGGTCTG
CAGTAGCCCTGGGTGTTTTCTGCGCATGTCTCTTCATGACAATGGCACTC
TCAATCAAGTTTAAGCATCATGGAGATATGTACATGGATGTCACCTTAAC
CAAATCGAGTAGTAAGGCTGTAACATTCTTGGATGCAAATTCAAATGTTA
TTGTTAAGGTGGACGAAAGATCATCTTTGGACACTGAGAGGTTACGCAAC
GAAACATCTCGTTTACAAAGACTCTTAAATGACGTACAAAAGAATATTGC
AAGAATGAAGGAAAGTCGTAAATTGTTTAACCAGACACCTTCGAAAGCAT
TGGCAAAAATCAAAACACCTGATTCCGCTATGGTGTATGAAAACCAAGAT
TTTTTATTATGTGGGAGACAGACTTTAAAATTGATGGTTCTAGTTTTAAC
TGGTCACGAGGAAAAAGATGCTAgagaaaaatttcgaaatgtttggTCGA
AAACCATAAAAGAAGCCTCGAAAGagaaaaacattgaaatcaaATGGCGG
ATGGTGTTTGTAATCGGGCGTGATCATGGCGAAACTGCGTCGGATGTTTA
CCACATCAACGAAGCAATCTTCAAGCGTGATATGGTGAATATTCACGCCC
TTAACACCCATACTATGGGCGCCCTTTATGGGGCGCTACATTGGGTGCAC
AATGGATGCTTCTACGAAAATCTTCTTGTAATACGCCCTCATATGGTACC
AAATATGGCCAAAATGTACGTTATGTTACAAGACTTGAATCGACTCAGTC
ATCAAAACTATTTCATACGGGAGACAGTTCAAGACTTAACCGATGCTTAT
CAGAGTACTGCATTGCTGATATCAAGATCTGCTTTGCAAAAAGCATTGCC
ATTAATGAAAATACATACTGGCTCAGTCTCGCCTATAAACTATGATGTTT
TATTAAGATATGTCGAGTATTTCAAGAGTAAGAATATAAGATATTCGAAC
TTTATGAGTGAGTCAAAGTGTGAATTTCAGAATGATTACGTCATCAGTGT
GATGCCTCATTCGATGTGTTTGGATCTTGTACAATATCAGATAATGGATA
ATGCAAATAAGACACTGTCTTAATTAACTCAACTCGACTTATTTATCCTT
GTACCCAGCAAGCACACGACGTTATT Coding sequence (CDS) from alignment at sc0000259:22915..24240 >TCONS_00017129 ID=TCONS_00017129|Name=TCONS_00017129|organism=Clytia hemisphaerica|type=CDS|length=1119bp|location=Sequence derived from alignment at sc0000259:22915..24240 (Clytia hemisphaerica)
ATGAATAAGCTACGAATTTCAAACAACACGAGACAAAAATGGTCTGCAGT
AGCCCTGGGTGTTTTCTGCGCATGTCTCTTCATGACAATGGCACTCTCAA
TCAAGTTTAAGCATCATGGAGATATGTACATGGATGTCACCTTAACCAAA
TCGAGTAGTAAGGCTGTAACATTCTTGGATGCAAATTCAAATGTTATTGT
TAAGGTGGACGAAAGATCATCTTTGGACACTGAGAGGTTACGCAACGAAA
CATCTCGTTTACAAAGACTCTTAAATGACGTACAAAAGAATATTGCAAGA
ATGAAGGAAAGTCGTAAATTGTTTAACCAGACACCTTCGAAAGCATTGGC
AAAAATCAAAACACCTGATTCCGCTATGGTGTATGAAAACCAAGATTTTT
TATTATGTGGGAGACAGACTTTAAAATTGATGGTTCTAGTTTTAACTGGT
CACGAGGAAAAAGATGCTAgagaaaaatttcgaaatgtttggTCGAAAAC
CATAAAAGAAGCCTCGAAAGagaaaaacattgaaatcaaATGGCGGATGG
TGTTTGTAATCGGGCGTGATCATGGCGAAACTGCGTCGGATGTTTACCAC
ATCAACGAAGCAATCTTCAAGCGTGATATGGTGAATATTCACGCCCTTAA
CACCCATACTATGGGCGCCCTTTATGGGGCGCTACATTGGGTGCACAATG
GATGCTTCTACGAAAATCTTCTTGTAATACGCCCTCATATGGTACCAAAT
ATGGCCAAAATGTACGTTATGTTACAAGACTTGAATCGACTCAGTCATCA
AAACTATTTCATACGGGAGACAGTTCAAGACTTAACCGATGCTTATCAGA
GTACTGCATTGCTGATATCAAGATCTGCTTTGCAAAAAGCATTGCCATTA
ATGAAAATACATACTGGCTCAGTCTCGCCTATAAACTATGATGTTTTATT
AAGATATGTCGAGTATTTCAAGAGTAAGAATATAAGATATTCGAACTTTA
TGAGTGAGTCAAAGTGTGAATTTCAGAATGATTACGTCATCAGTGTGATG
CCTCATTCGATGTGTTTGGATCTTGTACAATATCAGATAATGGATAATGC
AAATAAGACACTGTCTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017129-exon-sc0000259-1491911889:22915..24240 | TCONS_00017129-exon-sc0000259-1491911889:22915..24240 | Clytia hemisphaerica | exon |
| TCONS_00017129-exon-sc0000259-1510915933:22915..24240 | TCONS_00017129-exon-sc0000259-1510915933:22915..24240 | Clytia hemisphaerica | exon |
| TCONS_00017129-exon-sc0000259-1575043694:22915..24240 | TCONS_00017129-exon-sc0000259-1575043694:22915..24240 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000259 | supercontig | sc0000259:22915..24240 . |
Blast
The following BLAST results are available for this feature:
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