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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017128 ID=TCONS_00017128|Name=TCONS_00017128|organism=Clytia hemisphaerica|type=transcript|length=2208bp
CTCTGTCTAAATCCTTACCTGCAGTTTCTGTTTTTAAGAAAATAGATGAG
TTCCATCGCAGAGATTCTTGGCAGGCACATTAAGAGGTTGTTTGTTACAG
TTCAATAAGTATCCCACTCGAAAAATACTCAAAGGGAAATTGACCTCAAA
TTACGAAGACACTCTGTATTGTTAAACACACTTCTCAATTTTTAATCAGA
GATACGTAGCATCTTTTAAGAGGTATATATAATACTCAAGATTCGCTTTC
AAAGTCATAAGGAACAACACATCAATCATAGAAGGACAGACGACTGTAAT
ATCTCTACGACACCAAAACAAAGTAAAGGCAACAAATCTAACGTTATTTt
taaactcatttttgaaaggAAGGACGATGAAGTATTCCTTAAAAGCTTCC
ATTGTGGTGTTATTTGTGACTCTATTGGTCAATGGTAAATCAATCGACAT
TGATGATTACGTTAAATGCCAAGCATACGATCATCCAAGACTTCTAAAAA
AAGAAGGATGTCTGGATATAACGATCCCGGATAAAATGTGTAAAGGTGGC
TGCATCTCACAAGCATTCCCAGAGCTGAAGAAAAATCACCAAGAAGAAAT
TGCAATCCAGGATGACAATGATGATAATCAAATCTTATCATTATCAGTTC
GTCAAAACCAATGTCCAATGTGTTTACCAAAGAAAACAGCTAAAAGGACA
TTTGCAATGAAATGTAAAAAGCAGAATGTAAATCAACGACCAGCACAATT
ATCATCGTCATCTTCTTCAGCTTCATCGACGACAGCACGGTTTGTTGATG
AGGATACCGATCGCGATGTTGGTACCGATTATGATGAGATAAGACAAGTT
GAAGTGGACGTATTGGTTGAATGTCAATGTGTTCATGTTCCTTGCAATAA
ATGGATGAATATGAAGgaaatacaaaaacattataAAGCCCAACAATAAA
GAGACAATTTTGTCGGTGAGAGAAAAACTATCATTAGGTTCAACTTAAAA
CTCTAATTTTATGGTTTATATTTGCAAAAGGAGTGTATACTATACAgtgt
gttaaaaaaaaaaacgggatAGAATTTATATAAATAAGCACCCTCATGAT
TAGCGTCAATTTTTATTACCTAAAATTATTggattcttttttcaaaacct
gtGATTCTCTAATAATTTTTATcgagtttataaaaaaaaaagttatataa
attgttttcacttttttttccggACATGCTGTGTGCCAACTCGACTACAA
GggtttttttcattaaattacAACTTAGCCTGTCTGAGTACGTATAGCAT
TAATGtgtatgttttaaatttccaatTCGATAGGATGGAAGCGAAAGTTT
TCTAAAAAGAATTCTATTTTATCCAGATGATGCTTAGGATTTCATTGAAA
GGCCTTTGTTTAAGATTGTAGGACAAATAATTTCGCTCGGAGCTGATTTC
TCATTCGTCAAATTATAGCAAggtgaaatttttattacaccaaatcaaga
aaataaatccagaaaatttgaTAACTtttcagtgccgtagcaactggggg
agctatgcccccccaataactttttcaaaaatggttattttgcaaaatgc
aaagttcagcttttttaatttgtcataatttttgttttgagtgcattttc
aagcaatctagagctcaaaattttcctcttggccctcgcggtgtcaccaA
ACTTAAGCCCCCccaaatgcttcctacggcactgcttTTTGAGCCTTTTA
ATTAAATCCACCAAAATGAATCAATTAAATCACAGCACAGTTGACATTGA
CGCTCTCTGATTCGACATTCCATATTTTATATGCTCCATTATTCAATGAT
ATTGAAAGTCCGTCAACCAGAAACTCTAACATACAacactctactattcg
atacggcCGATACACCCGGGATACATTCCCTTGTTTTGATGAAAAcctaa
ttccccttgaaaattgaattagagagcgtcaactgtagtaaaaagaaata
tgtataaaataatttttatcataGTGTCATACGTCTTATTAATTTTACct
tgatatatttatttttcgtCTTTTgtatcttgaaaaatattttacaaata
tattttaaaatataGTGGCTATTTATTTGAACTTTTTAATATCATATTTT
AGCTGTTCCGGGGTTCACTTAAGACTCTTTGATAGACTGAATGACACGCT
TAAACCAC Run BLAST on NCBI protein sequence of TCONS_00017128-protein >TCONS_00017128-protein ID=TCONS_00017128-protein|Name=TCONS_00017128-protein|organism=Clytia hemisphaerica|type=polypeptide|length=190bp
MKYSLKASIVVLFVTLLVNGKSIDIDDYVKCQAYDHPRLLKKEGCLDITI
PDKMCKGGCISQAFPELKKNHQEEIAIQDDNDDNQILSLSVRQNQCPMCL
PKKTAKRTFAMKCKKQNVNQRPAQLSSSSSSASSTTARFVDEDTDRDVGT
DYDEIRQVEVDVLVECQCVHVPCNKWMNMKEIQKHYKAQQ Run BLAST on NCBI transcript from alignment at sc0000259:10002..12209 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017128 ID=TCONS_00017128|Name=TCONS_00017128|organism=Clytia hemisphaerica|type=transcript|length=2208bp|location=Sequence derived from alignment at sc0000259:10002..12209 (Clytia hemisphaerica)
GTGGTTTAAGCGTGTCATTCAGTCTATCAAAGAGTCTTAAGTGAACCCCG
GAACAGCTAAAATATGATATTAAAAAGTTCAAATAAATAGCCACtatatt
ttaaaatatatttgtaaaatatttttcaagatacAAAAGacgaaaaataa
atatatcaagGTAAAATTAATAAGACGTATGACACtatgataaaaattat
tttatacatatttctttttactacagttgacgctctctaattcaattttc
aaggggaattaggTTTTCATCAAAACAAGGGAATGTATCCCGGGTGTATC
GgccgtatcgaatagtagagtgtTGTATGTTAGAGTTTCTGGTTGACGGA
CTTTCAATATCATTGAATAATGGAGCATATAAAATATGGAATGTCGAATC
AGAGAGCGTCAATGTCAACTGTGCTGTGATTTAATTGATTCATTTTGGTG
GATTTAATTAAAAGGCTCAAAaagcagtgccgtaggaagcatttggGGGG
GCTTAAGTTtggtgacaccgcgagggccaagaggaaaattttgagctcta
gattgcttgaaaatgcactcaaaacaaaaattatgacaaattaaaaaagc
tgaactttgcattttgcaaaataaccatttttgaaaaagttattgggggg
gcatagctcccccagttgctacggcactgaaaAGTTAtcaaattttctgg
atttattttcttgatttggtgtaataaaaatttcaccTTGCTATAATTTG
ACGAATGAGAAATCAGCTCCGAGCGAAATTATTTGTCCTACAATCTTAAA
CAAAGGCCTTTCAATGAAATCCTAAGCATCATCTGGATAAAATAGAATTC
TTTTTAGAAAACTTTCGCTTCCATCCTATCGAattggaaatttaaaacat
acaCATTAATGCTATACGTACTCAGACAGGCTAAGTTgtaatttaatgaa
aaaaaccCTTGTAGTCGAGTTGGCACACAGCATGTccggaaaaaaaagtg
aaaacaatttatataacttttttttttataaactcgATAAAAATTATTAG
AGAATCacaggttttgaaaaaagaatccAATAATTTTAGGTAATAAAAAT
TGACGCTAATCATGAGGGTGCTTATTTATATAAATTCTatcccgtttttt
tttttaacacacTGTATAGTATACACTCCTTTTGCAAATATAAACCATAA
AATTAGAGTTTTAAGTTGAACCTAATGATAGTTTTTCTCTCACCGACAAA
ATTGTCTCTTTATTGTTGGGCTTtataatgtttttgtatttcCTTCATAT
TCATCCATTTATTGCAAGGAACATGAACACATTGACATTCAACCAATACG
TCCACTTCAACTTGTCTTATCTCATCATAATCGGTACCAACATCGCGATC
GGTATCCTCATCAACAAACCGTGCTGTCGTCGATGAAGCTGAAGAAGATG
ACGATGATAATTGTGCTGGTCGTTGATTTACATTCTGCTTTTTACATTTC
ATTGCAAATGTCCTTTTAGCTGTTTTCTTTGGTAAACACATTGGACATTG
GTTTTGACGAACTGATAATGATAAGATTTGATTATCATCATTGTCATCCT
GGATTGCAATTTCTTCTTGGTGATTTTTCTTCAGCTCTGGGAATGCTTGT
GAGATGCAGCCACCTTTACACATTTTATCCGGGATCGTTATATCCAGACA
TCCTTCTTTTTTTAGAAGTCTTGGATGATCGTATGCTTGGCATTTAACGT
AATCATCAATGTCGATTGATTTACCATTGACCAATAGAGTCACAAATAAC
ACCACAATGGAAGCTTTTAAGGAATACTTCATCGTCCTTcctttcaaaaa
tgagtttaaAAATAACGTTAGATTTGTTGCCTTTACTTTGTTTTGGTGTC
GTAGAGATATTACAGTCGTCTGTCCTTCTATGATTGATGTGTTGTTCCTT
ATGACTTTGAAAGCGAATCTTGAGTATTATATATACCTCTTAAAAGATGC
TACGTATCTCTGATTAAAAATTGAGAAGTGTGTTTAACAATACAGAGTGT
CTTCGTAATTTGAGGTCAATTTCCCTTTGAGTATTTTTCGAGTGGGATAC
TTATTGAACTGTAACAAACAACCTCTTAATGTGCCTGCCAAGAATCTCTG
CGATGGAACTCATCTATTTTCTTAAAAACAGAAACTGCAGGTAAGGATTT
AGACAGAG Coding sequence (CDS) from alignment at sc0000259:10002..12209 >TCONS_00017128 ID=TCONS_00017128|Name=TCONS_00017128|organism=Clytia hemisphaerica|type=CDS|length=573bp|location=Sequence derived from alignment at sc0000259:10002..12209 (Clytia hemisphaerica)
TTATTGTTGGGCTTtataatgtttttgtatttcCTTCATATTCATCCATT
TATTGCAAGGAACATGAACACATTGACATTCAACCAATACGTCCACTTCA
ACTTGTCTTATCTCATCATAATCGGTACCAACATCGCGATCGGTATCCTC
ATCAACAAACCGTGCTGTCGTCGATGAAGCTGAAGAAGATGACGATGATA
ATTGTGCTGGTCGTTGATTTACATTCTGCTTTTTACATTTCATTGCAAAT
GTCCTTTTAGCTGTTTTCTTTGGTAAACACATTGGACATTGGTTTTGACG
AACTGATAATGATAAGATTTGATTATCATCATTGTCATCCTGGATTGCAA
TTTCTTCTTGGTGATTTTTCTTCAGCTCTGGGAATGCTTGTGAGATGCAG
CCACCTTTACACATTTTATCCGGGATCGTTATATCCAGACATCCTTCTTT
TTTTAGAAGTCTTGGATGATCGTATGCTTGGCATTTAACGTAATCATCAA
TGTCGATTGATTTACCATTGACCAATAGAGTCACAAATAACACCACAATG
GAAGCTTTTAAGGAATACTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017128-exon-sc0000259-1491911889:10002..12209 | TCONS_00017128-exon-sc0000259-1491911889:10002..12209 | Clytia hemisphaerica | exon |
| TCONS_00017128-exon-sc0000259-1510915933:10002..12209 | TCONS_00017128-exon-sc0000259-1510915933:10002..12209 | Clytia hemisphaerica | exon |
| TCONS_00017128-exon-sc0000259-1575043694:10002..12209 | TCONS_00017128-exon-sc0000259-1575043694:10002..12209 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000259 | supercontig | sc0000259:10002..12209 . |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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