|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017110 ID=TCONS_00017110|Name=TCONS_00017110|organism=Clytia hemisphaerica|type=transcript|length=1710bpRun BLAST on NCBI transcript from alignment at sc0000259:357075..359841+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00017110 ID=TCONS_00017110|Name=TCONS_00017110|organism=Clytia hemisphaerica|type=transcript|length=2767bp|location=Sequence derived from alignment at sc0000259:357075..359841+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00017110 vs. Swiss-Prot (Human)
Match: LRC15 (Leucine-rich repeat-containing protein 15 OS=Homo sapiens GN=LRRC15 PE=2 SV=2) HSP 1 Score: 101.293 bits (251), Expect = 2.025e-22 Identity = 65/190 (34.21%), Postives = 97/190 (51.05%), Query Frame = 3
Query: 318 EKLYLGGNKITQVNMEEFSHLTKLTYLSLNFNKLTKLPDRIGHFLPRLRILHLTANQIKTISSENLRNYDNLRVLNLDQNSIKVIGENTFDKMSNLRELLLGQNQISDINQNTFNGLRNLIKLQLSDNKIKTIHEDVFQSTLQLQELYLEVNKITHIPKGLFYRLTKLRIIYLSDNFIAQIEEGAFDGLT 887
++L L GN + + F HL LT L+L N LT + R+ L L++L L N++ I NL+ L L QN I ++ F NL+ L L N IS + + F L L +L L N +K + +F L+EL+L N I+ +P +F L +L+++ LS N I+ I GAF+GLT
Sbjct: 152 KELQLHGNHLEYIPDGAFDHLVGLTKLNLGKNSLTHISPRVFQHLGNLQVLRLYENRLTDIPMGTFDGLVNLQELALQQNQIGLLSPGLFHNNHNLQRLYLSNNHISQLPPSVFMQLPQLNRLTLFGNSLKELSPGIFGPMPNLRELWLYDNHISSLPDNVFSNLRQLQVLILSRNQISFISPGAFNGLT 341 HSP 2 Score: 91.2781 bits (225), Expect = 2.997e-19 Identity = 58/176 (32.95%), Postives = 93/176 (52.84%), Query Frame = 3
Query: 318 EKLYLGGNKITQVNMEEFSHLTKLTYLSLNFNKLTKLPDRIGHFLPRLRILHLTANQIKTISSENLRNYDNLRVLNLDQNSIKVIGENTFDKMSNLRELLLGQNQISDINQNTFNGLRNLIKLQLSDNKIKTIHEDVFQSTLQLQELYLEVNKITHIPKGLFYRLTKLRIIYLSDN 845
++LYL N I+Q+ F L +L L+L N L +L I +P LR L L N I ++ N L+VL L +N I I F+ ++ LREL L N + D++ N F L NL + L +N+++ + ++F + L + L+ N++ ++P G+F L KL + L DN
Sbjct: 248 QRLYLSNNHISQLPPSVFMQLPQLNRLTLFGNSLKELSPGIFGPMPNLRELWLYDNHISSLPDNVFSNLRQLQVLILSRNQISFISPGAFNGLTELRELSLHTNALQDLDGNVFRMLANLQNISLQNNRLRQLPGNIFANVNGLMAIQLQNNQLENLPLGIFDHLGKLCELRLYDN 423 HSP 3 Score: 89.7373 bits (221), Expect = 8.506e-19 Identity = 63/185 (34.05%), Postives = 93/185 (50.27%), Query Frame = 3
Query: 321 KLYLGGNKITQVNMEEFSHLTKLTYLSLNFNKLTKLPDRIGHFLPRLRILHLTANQIKTISSENLRNYDNLRVLNLDQNSIKVIGENTFDKMSNLRELLLGQNQISDINQNTFNGLRNLIKLQLSDNKIKTIHEDVFQSTLQLQELYLEVNKITHIPKGLFYRLTKLRIIYLSDNFIAQIEEGAF 875
KL LG N +T ++ F HL L L L N+LT +P L L+ L L NQI +S N NL+ L L N I + + F ++ L L L N + +++ F + NL +L L DN I ++ ++VF + QLQ L L N+I+ I G F LT+LR + L N + ++ F
Sbjct: 177 KLNLGKNSLTHISPRVFQHLGNLQVLRLYENRLTDIPMGTFDGLVNLQELALQQNQIGLLSPGLFHNNHNLQRLYLSNNHISQLPPSVFMQLPQLNRLTLFGNSLKELSPGIFGPMPNLRELWLYDNHISSLPDNVFSNLRQLQVLILSRNQISFISPGAFNGLTELRELSLHTNALQDLDGNVF 361 HSP 4 Score: 86.2705 bits (212), Expect = 1.109e-17 Identity = 60/189 (31.75%), Postives = 97/189 (51.32%), Query Frame = 3
Query: 318 EKLYLGGNKITQVNMEEFSHLTKLTYLSLNFNKLTKLPDRIGHFLPRLRILHLTANQIKTISSENLRNYDNLRVLNLDQNSIKVIGENTFDKMSNLRELLLGQNQISDINQNTFNGLRNLIKLQLSDNKIKTIHEDVFQSTLQLQELYLEVNKITHIPKGLFYRLTKLRIIYLSDNFIAQIEEGAFDGL 884
++L L N+I ++ F + L L L+ N +++LP + LP+L L L N +K +S NLR L L N I + +N F + L+ L+L +NQIS I+ FNGL L +L L N ++ + +VF+ LQ + L+ N++ +P +F + L I L +N + + G FD L
Sbjct: 224 QELALQQNQIGLLSPGLFHNNHNLQRLYLSNNHISQLPPSVFMQLPQLNRLTLFGNSLKELSPGIFGPMPNLRELWLYDNHISSLPDNVFSNLRQLQVLILSRNQISFISPGAFNGLTELRELSLHTNALQDLDGNVFRMLANLQNISLQNNRLRQLPGNIFANVNGLMAIQLQNNQLENLPLGIFDHL 412 HSP 5 Score: 85.1149 bits (209), Expect = 2.548e-17 Identity = 63/250 (25.20%), Postives = 112/250 (44.80%), Query Frame = 3
Query: 198 ISSQNCSTKCRCTKTFTYCLYQDITSEELVNILPTIPKTTEKLYLGGNKITQVNMEEFSHLTKLTYLSLNFNKLTKLPDRIGHFLPRLRILHLTANQIKT------------------------ISSENLRNYDNLRVLNLDQNSIKVIGENTFDKMSNLRELLLGQNQISDINQNTFNGLRNLIKLQLSDNKIKTIHEDVFQSTLQLQELYLEVNKITHIPKGLFYRLTKLRIIYLSDNFIAQIEEGAF 875
++ C ++C C++ + T +V + +P L + IT++N F +++ L L + N+L+++ L LR L L N+++ I + NL+ L L N ++ I + FD + L +L LG+N ++ I+ F L NL L+L +N++ I F + LQEL L+ N+I + GLF+ L+ +YLS+N I+Q+ F
Sbjct: 20 LAYHGCPSECTCSRASQV----ECTGARIVAVPTPLPWNAMSLQILNTHITELNESPFLNISALIALRIEKNELSRITPGAFRNLGSLRYLSLANNKLQVLPIGLFQGLDSLESLLLSSNQLLQIQPAHFSQCSNLKELQLHGNHLEYIPDGAFDHLVGLTKLNLGKNSLTHISPRVFQHLGNLQVLRLYENRLTDIPMGTFDGLVNLQELALQQNQIGLLSPGLFHNNHNLQRLYLSNNHISQLPPSVF 265 The following BLAST results are available for this feature:
BLAST of TCONS_00017110 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2026, MARIMBA.