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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017086 ID=TCONS_00017086|Name=TCONS_00017086|organism=Clytia hemisphaerica|type=transcript|length=1121bp
GCTGGCTGAGGCTGAGCAGGCATAGGAATGGTTGGATGAGGAATAGTTGG
AGGAGTGGTCTCTAATGGTGAGGCTGGAAGCAGATTGGTGGGTGTGGGTA
GTGctatccagacgatctcaatcgaacggaatggacgatcgaaccagtcg
aaccaaatcgaatgcaatcgaccaattgaaattcgattgtcgaacgcaat
cgaatctcaatcgatctcaatcgaatattaccgcaattttcaaattcgat
tgatattcgattgcgttccattgatgttcaattgcgttcgatcgtcgatt
cattgacccccggattgttcatcgcataatttctacgggaaatcgaaagt
aatttcattctgcttgtgatgtttgagagcttggatgctgggaagctgca
agaataaagccagacgatctcaatcgaacggaatcgacaatTGAACcaca
gtcgaacaacaatcgaaccaattgaatattacccagaattttgacgttcg
attgagattcgattgcgttcgacaatcgaatttcaatcagtcgattgact
ggttcgattgtcgattctgtttgattgagatcgtctggtgcTGTTGGTGA
TACAAATGTTGCTAGTCGAAGGAAGCGACGATTTTGCAGCGTCACCCTCC
CTGAGCCATTGGTTCTGACTCTGTATTGTCTATTAGGGAGTGTTTCTACA
ATCATCCCAGAGCGAATCCATCGGCGTTGATGCTTCTTACTATGGTTTTG
GATGACGACAGTGGCTCCAACGGATAGGGACGGTAATGTTTTGGCGTGTC
TGTTGTACTTCTCACTGATGACATGGTTTCGTTTGGAGAATGCTTCTTCC
CATTGTCTTGCGTTTATCATCCATGATGAGTGAAGCTGATAGTGGGATGG
GTGTGTGGGTGTGTGGGTATGTGGTCACGCAGCTGGCAGTGAAATAGGAT
TTGGGCAGGACTGAGTTTGAGATCTGGTAGAGGAGTATTTCCGTATTGTA
AGATTGCTCCAGAAACCTTGTTGTTGTCGATTGTGCCATTTCGTGATACG
TTATCAAGTAGAATTCTTTTTGCAGCTTTCACCCCTAGCTCTGCTCTGCC
ATTAGACTGGGGGTACTCTGC Run BLAST on NCBI protein sequence of TCONS_00017086-protein >TCONS_00017086-protein ID=TCONS_00017086-protein|Name=TCONS_00017086-protein|organism=Clytia hemisphaerica|type=polypeptide|length=171bp
MINARQWEEAFSKRNHVISEKYNRHAKTLPSLSVGATVVIQNHSKKHQRR
WIRSGMIVETLPNRQYRVRTNGSGRVTLQNRRFLRLATFVSPTAPDDLNQ
TESTIEPVNRLIEIRLSNAIESQSNVKILGNIQLVRLLFDCGSIVDSVRL
RSSGFILAASQHPSSQTSQAE Run BLAST on NCBI transcript from alignment at sc0000257:217046..218166 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017086 ID=TCONS_00017086|Name=TCONS_00017086|organism=Clytia hemisphaerica|type=transcript|length=1121bp|location=Sequence derived from alignment at sc0000257:217046..218166 (Clytia hemisphaerica)
GCAGAGTACCCCCAGTCTAATGGCAGAGCAGAGCTAGGGGTGAAAGCTGC
AAAAAGAATTCTACTTGATAACGTATCACGAAATGGCACAATCGACAACA
ACAAGGTTTCTGGAGCAATCTTACAATACGGAAATACTCCTCTACCAGAT
CTCAAACTCAGTCCTGCCCAAATCCTATTTCACTGCCAGCTGCGTGACCA
CATACCCACACACCCACACACCCATCCCACTATCAGCTTCACTCATCATG
GATGATAAACGCAAGACAATGGGAAGAAGCATTCTCCAAACGAAACCATG
TCATCAGTGAGAAGTACAACAGACACGCCAAAACATTACCGTCCCTATCC
GTTGGAGCCACTGTCGTCATCCAAAACCATAGTAAGAAGCATCAACGCCG
ATGGATTCGCTCTGGGATGATTGTAGAAACACTCCCTAATAGACAATACA
GAGTCAGAACCAATGGCTCAGGGAGGGTGACGCTGCAAAATCGTCGCTTC
CTTCGACTAGCAACATTTGTATCACCAACAgcaccagacgatctcaatca
aacagaatcgacaatcgaaccagtcaatcgactgattgaaattcgattgt
cgaacgcaatcgaatctcaatcgaacgtcaaaattctgggtaatattcaa
ttggttcgattgttgttcgactgtgGTTCAattgtcgattccgttcgatt
gagatcgtctggctttattcttgcagcttcccagcatccaagctctcaaa
catcacaagcagaatgaaattactttcgatttcccgtagaaattatgcga
tgaacaatccgggggtcaatgaatcgacgatcgaacgcaattgaacatca
atggaacgcaatcgaatatcaatcgaatttgaaaattgcggtaatattcg
attgagatcgattgagattcgattgcgttcgacaatcgaatttcaattgg
tcgattgcattcgatttggttcgactggttcgatcgtccattccgttcga
ttgagatcgtctggatagCACTACCCACACCCACCAATCTGCTTCCAGCC
TCACCATTAGAGACCACTCCTCCAACTATTCCTCATCCAACCATTCCTAT
GCCTGCTCAGCCTCAGCCAGC Coding sequence (CDS) from alignment at sc0000257:217046..218166 >TCONS_00017086 ID=TCONS_00017086|Name=TCONS_00017086|organism=Clytia hemisphaerica|type=CDS|length=516bp|location=Sequence derived from alignment at sc0000257:217046..218166 (Clytia hemisphaerica)
ATGATAAACGCAAGACAATGGGAAGAAGCATTCTCCAAACGAAACCATGT
CATCAGTGAGAAGTACAACAGACACGCCAAAACATTACCGTCCCTATCCG
TTGGAGCCACTGTCGTCATCCAAAACCATAGTAAGAAGCATCAACGCCGA
TGGATTCGCTCTGGGATGATTGTAGAAACACTCCCTAATAGACAATACAG
AGTCAGAACCAATGGCTCAGGGAGGGTGACGCTGCAAAATCGTCGCTTCC
TTCGACTAGCAACATTTGTATCACCAACAgcaccagacgatctcaatcaa
acagaatcgacaatcgaaccagtcaatcgactgattgaaattcgattgtc
gaacgcaatcgaatctcaatcgaacgtcaaaattctgggtaatattcaat
tggttcgattgttgttcgactgtgGTTCAattgtcgattccgttcgattg
agatcgtctggctttattcttgcagcttcccagcatccaagctctcaaac
atcacaagcagaatga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017086-exon-sc0000257-1491911889:217046..218166 | TCONS_00017086-exon-sc0000257-1491911889:217046..218166 | Clytia hemisphaerica | exon |
| TCONS_00017086-exon-sc0000257-1510915933:217046..218166 | TCONS_00017086-exon-sc0000257-1510915933:217046..218166 | Clytia hemisphaerica | exon |
| TCONS_00017086-exon-sc0000257-1575043694:217046..218166 | TCONS_00017086-exon-sc0000257-1575043694:217046..218166 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000257 | supercontig | sc0000257:217046..218166 . |
Blast
The following BLAST results are available for this feature:
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