TCONS_00017078 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017078
Unique NameTCONS_00017078
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length881

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017078 ID=TCONS_00017078|Name=TCONS_00017078|organism=Clytia hemisphaerica|type=transcript|length=881bp
CTTTTGTGCTAACTATCTGGATGTGACAAAAAATATCGGAAGGTTAAATC
TTTTTCCCTTTGGTAAGTCTTCACGAGGAAATTACACAGTCCCTACAAAC
AAGGCTAATGTCGGTAATATAACAAGAAGAAGGGAGGTGTAATATAAAAG
TTCTAATTGAAATCTTCATATTCAAAGAACTCGTGCTAAGATGGAAAAGT
AGGGCTATGTGAGAAACTCGTCCCTGACCTTTTTGTCCAAAAGAATCAAG
CTTTGCGGACTTGATAAAAATCGAGAAGAAAGGCCTGattgttaaaataa
aaattttggcgTGATGATGTGAAATTTGGGTCAACTGTGTTGTCCTCGTA
aatgttttgtaaaaatatttggaCCTTATTCTGAAAAACTTGGACCTTTC
CTGAAGAACAAGCTGTTTGACTTTTCTTATAACAGAATTTTGAGGGGagt
ttgtaaaaattttgaccgtttttccgaaaaagttctgaaaaaatctttct
ttgtaaATTACCATTCATGTAAGAACTGCAGTCTGCCATTAATAGTAAAG
TTTCcataatcaaaatgaaaattttatctTTAAGGATGACTCGGGCAAAT
TAATTTACCCGAGCCAAATTTACCGTAATTTttcatatcacttcatacat
cgaaagaagcgtattagaGTGATCACTGGAATggctgtgccataattaat
tttttgacctAAAAAAGATAGTAGGCAAAAACCGAaaaatgctgatgtca
gcaaaagttgttttttgaataacttcacCTTTGCTggtggtataaacatg
aaattgggaccaaagttgcacatcattaaaaggaccattttcgcataaaa
ttatttttcaagaatCACATTTCTACATTAg
Run BLAST on NCBI

transcript from alignment at sc0000257:19619..20499

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017078 ID=TCONS_00017078|Name=TCONS_00017078|organism=Clytia hemisphaerica|type=transcript|length=881bp|location=Sequence derived from alignment at sc0000257:19619..20499 (Clytia hemisphaerica)
cTAATGTAGAAATGTGattcttgaaaaataattttatgcgaaaatggtcc
ttttaatgatgtgcaactttggtcccaatttcatgtttataccaccAGCA
AAGgtgaagttattcaaaaaacaacttttgctgacatcagcattttTCGG
TTTTTGCCTACTATCTTTTTTaggtcaaaaaattaattatggcacagccA
TTCCAGTGATCACtctaatacgcttctttcgatgtatgaagtgatatgaa
AAATTACGGTAAATTTGGCTCGGGTAAATTAATTTGCCCGAGTCATCCTT
AAagataaaattttcattttgattatgGAAACTTTACTATTAATGGCAGA
CTGCAGTTCTTACATGAATGGTAATttacaaagaaagattttttcagaac
tttttcggaaaaacggtcaaaatttttacaaactCCCCTCAAAATTCTGT
TATAAGAAAAGTCAAACAGCTTGTTCTTCAGGAAAGGTCCAAGTTTTTCA
GAATAAGGtccaaatatttttacaaaacattTACGAGGACAACACAGTTG
ACCCAAATTTCACATCATCAcgccaaaatttttattttaacaatCAGGCC
TTTCTTCTCGATTTTTATCAAGTCCGCAAAGCTTGATTCTTTTGGACAAA
AAGGTCAGGGACGAGTTTCTCACATAGCCCTACTTTTCCATCTTAGCACG
AGTTCTTTGAATATGAAGATTTCAATTAGAACTTTTATATTACACCTCCC
TTCTTCTTGTTATATTACCGACATTAGCCTTGTTTGTAGGGACTGTGTAA
TTTCCTCGTGAAGACTTACCAAAGGGAAAAAGATTTAACCTTCCGATATT
TTTTGTCACATCCAGATAGTTAGCACAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009543XLOC_009543Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017078-exon-sc0000257-1491911889:19619..20499TCONS_00017078-exon-sc0000257-1491911889:19619..20499Clytia hemisphaericaexon
TCONS_00017078-exon-sc0000257-1510915933:19619..20499TCONS_00017078-exon-sc0000257-1510915933:19619..20499Clytia hemisphaericaexon
TCONS_00017078-exon-sc0000257-1575043694:19619..20499TCONS_00017078-exon-sc0000257-1575043694:19619..20499Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000257supercontigsc0000257:19619..20499 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.105589	0	0.179329	0.0584818	0	0.05626	0	0	0.133466	0	0	0.0351607	0.0351118	0.55371	0	0.0321713	0	0.040622	0.224486	0.176181	0.510445	1.54673	0.121066	0.220133	0.226731	0.358856	0	0.0772581	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017078 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top