TCONS_00017075 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017075
Unique NameTCONS_00017075
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length308

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017075 ID=TCONS_00017075|Name=TCONS_00017075|organism=Clytia hemisphaerica|type=transcript|length=308bp
CGTTGTTCTTTACCTCTTGCAAGGAAGAGACTTGATAATCTTCAATAGAA
AAAGAGACGTTAAATTCTTCATAGAACGATCCCCGGtatttgttgaaaaa
ataagcATCCCCACTTTGAGAGACATTTCCAAAATGAATAGGTTTATTGA
TCCGGGTGCTGAAAAAGCTGCTTTTTACTGAGGGGTTTGCTTTCTTCATG
ATTCGAACTGTTTGTTGATCAGATGGCGAGGTCTTTACGGTGATATTAAA
ATAGGCGTTTCCGCTTGCGCCAATAATTTCTTCCGAAACATTAATAACGT
AACCATAA
Run BLAST on NCBI

protein sequence of TCONS_00017075-protein

>TCONS_00017075-protein ID=TCONS_00017075-protein|Name=TCONS_00017075-protein|organism=Clytia hemisphaerica|type=polypeptide|length=102bp
YGYVINVSEEIIGASGNAYFNITVKTSPSDQQTVRIMKKANPSVKSSFFS
TRINKPIHFGNVSQSGDAYFFNKYRGSFYEEFNVSFSIEDYQVSSLQEVK
NN
Run BLAST on NCBI

transcript from alignment at sc0000257:5981..6288

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017075 ID=TCONS_00017075|Name=TCONS_00017075|organism=Clytia hemisphaerica|type=transcript|length=308bp|location=Sequence derived from alignment at sc0000257:5981..6288 (Clytia hemisphaerica)
TTATGGTTACGTTATTAATGTTTCGGAAGAAATTATTGGCGCAAGCGGAA
ACGCCTATTTTAATATCACCGTAAAGACCTCGCCATCTGATCAACAAACA
GTTCGAATCATGAAGAAAGCAAACCCCTCAGTAAAAAGCAGCTTTTTCAG
CACCCGGATCAATAAACCTATTCATTTTGGAAATGTCTCTCAAAGTGGGG
ATgcttattttttcaacaaataCCGGGGATCGTTCTATGAAGAATTTAAC
GTCTCTTTTTCTATTGAAGATTATCAAGTCTCTTCCTTGCAAGAGGTAAA
GAACAACG

Coding sequence (CDS) from alignment at sc0000257:5981..6288

>TCONS_00017075 ID=TCONS_00017075|Name=TCONS_00017075|organism=Clytia hemisphaerica|type=CDS|length=306bp|location=Sequence derived from alignment at sc0000257:5981..6288 (Clytia hemisphaerica)
TATGGTTACGTTATTAATGTTTCGGAAGAAATTATTGGCGCAAGCGGAAA
CGCCTATTTTAATATCACCGTAAAGACCTCGCCATCTGATCAACAAACAG
TTCGAATCATGAAGAAAGCAAACCCCTCAGTAAAAAGCAGCTTTTTCAGC
ACCCGGATCAATAAACCTATTCATTTTGGAAATGTCTCTCAAAGTGGGGA
TgcttattttttcaacaaataCCGGGGATCGTTCTATGAAGAATTTAACG
TCTCTTTTTCTATTGAAGATTATCAAGTCTCTTCCTTGCAAGAGGTAAAG
AACAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009540XLOC_009540Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017075-proteinTCONS_00017075-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017075-exon-sc0000257-1491911889:5981..6288TCONS_00017075-exon-sc0000257-1491911889:5981..6288Clytia hemisphaericaexon
TCONS_00017075-exon-sc0000257-1510915933:5981..6288TCONS_00017075-exon-sc0000257-1510915933:5981..6288Clytia hemisphaericaexon
TCONS_00017075-exon-sc0000257-1575043694:5981..6288TCONS_00017075-exon-sc0000257-1575043694:5981..6288Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000257supercontigsc0000257:5981..6288 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.966007	0	0	0	0	0.37385	0	0.47707	0.238203	0	0	0.873019	0.268872	0	0	0	0	0	0	0	1.92272	4.46156	0	0.524129	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017075 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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