|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017059 ID=TCONS_00017059|Name=TCONS_00017059|organism=Clytia hemisphaerica|type=transcript|length=1215bp
CGATCGTTTCGTTCGTCTTGATCGATGTTTTGATGGGCTGATCACACAAA
CATTTCCTTTCCTTCGAACATTTCCACAAATCAATTCTCTCCACCAACTC
AAAAAGgtCTATCGTTCGTTGTTGCTTTCCAAAGTCCGAAATCCATTTCA
CGTCCCTCGCCGCCAGTGATGTTCGCATTTCGTACACGACCTCCTTCTTG
TTTTTCGTAAACGTAACGTTAACGTTACTCGTTACCCTCGGATCCTTTTC
AACAGTAGCAGTTTAACTTGCTTGTGAATTGCTTGGAGTAAAACCCAGTT
TGGAGTTTCATATTATGTAATGGCTTTCAGTTGTCATTCATGGTTATCAC
AGTATCATGTTTTCACATACAATGCATTTTGAAACAGtggatttttttca
cagtgatccTGGCAAAAAGTAAACCGTTTACTGGAATCACGCGATGCGTG
TCGTTTATTCCGGCTAAGTAGAACTTTCAATAGATACCTTAAGCaaggaa
actaattttggcgagaaataaattttgagaattttgccTAATGTGTTTCC
AGATATAATTGACAGttgaaacaagaatgcctgtaacttttgatattcTG
ATATAATTTCGAaaccttttttgcttgttttagagaatcaaaagtgctat
atttgattgtatttttggttgaaaaattcgtgatttttagcggttaaatt
tgtgattgcaaaaatgagctttttatctacttatgctataacgttctttt
ttacaccagtggaagttcaaccttaggttaagaaggttgtcaaatttAAA
GGCAAATTGAAAAGTCCTTAGGAAGATAATGGGACCCGAAGTACCCCTTG
CTAGCACTTTTTTTCTGTGAAAcatcaaatctccaaatttttaattttac
atctcgccaaaatttctcaTTGATTAATAACTTAATTTGTTGGTCATTtc
ggaattgaaaaaaattcaaaaagtcagcatttattttggattttgatgaa
CCTGCAATCAGCTGGACAATGGACCTGAAATAATTCTGGCATCAAGTGAT
TTAcgaaaattttatatttattttcacGTAAAAAACAAGAGTtcataaaa
cgaaaaaatacatttttttttgaatattagttttacataatataaatttt
acttGTATAAATAGAGTAACTTTGTATTCATTACacattttcaaactaaa
aaaatatGGTCCGAT Run BLAST on NCBI transcript from alignment at sc0000257:313770..317034- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017059 ID=TCONS_00017059|Name=TCONS_00017059|organism=Clytia hemisphaerica|type=transcript|length=3265bp|location=Sequence derived from alignment at sc0000257:313770..317034- (Clytia hemisphaerica)
CGATCGTTTCGTTCGTCTTGGTAAGTAAAATATCCAAATTTTCATGATTA
TTTTTAGGATAGGAACGTTTTTTTCGGATAGGATTGATGAAACGCAAATT
TTTTATTTGAATTGATTTTTTTTATAAATAACATCTTTTATAAGAACAAT
ACAATTGTAAGAAATCCTATAACGCGTGATAATGTGTGACAAAAAACTTG
ACATAAAATTTTGTTTTTTGAAACTGCACCTGTTATTTCCTTTCGTTCAA
ATTTTCAACAAAGAAAAGTTAAAATAACGTAGATTTCGCCAGGTGAGTGG
CGGTGTCTTTTGATCTTGTCACGCGTTATCTCACAGAATTTTTTTAAAAT
GAATTTCAATCCAAGAACGCATGATAACGCGTGATAAAAAATTTTTTTAG
ACGTTTTTCCACTATGAGATAACAGACAAAAAATTTTCGTGAATTTGTGT
GACAACACAGATCTGTAAAGCCCGAAGGGCTAGATTTGCGGCTTTTATCG
AAAAGTGAAGCCTAGGTTTGGAAGGATTTCCTACCAAAGTCACGTGACTA
AAATATGCAATTTCACCGGTTTGAGAGATGTGAAATAGTGTTTGCCGCCT
ACACGCTTTTTTTTTAATAAGAATGGTGTAAATCCATTTCATCATGGATA
TTCTTAACTTTTTTGGGAAAATTATCTTAAAATATTCTTACATCACATTC
TTAAGGTTAGGACCCTAATTCATACTAGATTTAACATTTAGCACATAAGT
CCTAAGCATAAAATGGCACTTTTGTAAAAGGAGTGAGCCTAACTTGGGGA
TAATTTATAATTTATAATTAAAAATGCTCTAAAATGGCATTCTTAGCTTT
AGTAGCAAAATTCCATGATTGTGATATTCTTAGCATATTCTTAGTTTTTT
GACCATTTTTATCATGGACATTCTTATAAAATGTATTTTTATTTAAAAAA
AAGCGTGTACTTTTTTTGATCCCGCGCTCCGAAAACAATTAAAATGCTAG
ATCCTATCCATCGGCACGAAATTTAAAAAGTCAAATTTTTGCTTCACTTT
TTTTTGCTGGAGAAAGCTTAAAGTTGCCTATCTAGCCCTTCGGGCTTTAC
AGATATCTGTGTGTGACAAACATGCTTTTTATCATAGCATACAGTGGAAA
CCGACTTTAATAACATACAGTAGGAGAGAGAAATTCGAAATCGATTACAA
TAGAGAAAAGTGAATTAAAACAATAAGATGAAAAAATATTTACGGCTTCA
TGAAAATGGATTAATTTAGTACAATGTACGAAACTATTGTAGTGTTAAAA
AAATCCTTTGTTTTTTTAACAGACTGGTTGTTCTATTAGATAACCATGTA
TTGGGTTTTTTTTACAGATCGATGTTTTGATGGGCTGATCACACAAACAT
TTCCTTTCCTTCGAACATTTCCACAAATCAATTCTCTCCACCAACTCAAA
AAGGTAAAATAATTAGATCCCCCCTCTAAAATTTCAGGCATCAAGCCAGT
TAGTGACGTGGTGGTATACCCTAAAAACTTTTAAATCCTGGTGAATAAAG
GGGGGGGGGGTCGGTACTAAAATCTCATGTGTAAAATAAATTTTCGAGAT
TGCTATGCTTGGTATGCTCCACCACCCCACTTTTGAAAAGTACTAAAATT
TTTATGATGAGTTTGTTTCAATCTTATTCAGTTCTTAATAAATCACTTGG
TTGGATTTTTAAATCAAATTGTAGATACTCTAACTATGTATGGTTTCGCA
ATGTTCTTCCATTGATTTGATATTAGTGAACATTTCGAAGTACACTTTTT
TATAAGAACAATTTTATAAGAACAATGAGGCTCGAAATCTTAAAAAAGAA
AGAACAATTTAAGAAAAATGGCGAGACTGAAATTACTCAATTTCAAGCAA
TTAAAGGGTAAACGTAGTAAAAACTGGGTATAACACCTTAAAAACCTCAA
TTACACCCTATAAATAAAAACAGTATAAGAACAATTTGAGGCTCACAAGC
GCCAAAAAAAATAAGAACAGCTGAGCCTCAGAAAAATTAACTGGTTCTTA
TAAAAAAAGTGTGAATGGTTCGATTTCGAATCAGGTGTGCTTTATAACAA
TATTATTTGGTGAAAACAAAGTATCAAATTTCCTTATCTTATGTTTTTGT
TTTCAGGTCTATCGTTCGTTGTTGCTTTCCAAAGTCCGAAATCCATTTCA
CGTCCCTCGCCGCCAGTGATGTTCGCATTTCGTACACGACCTCCTTCTTG
TTTTTCGTAAACGTAACGTTAACGTTACTCGTTACCCTCGGATCCTTTTC
AACAGTAGCAGTTTAACTTGCTTGTGAATTGCTTGGAGTAAAACCCAGTT
TGGAGTTTCATATTATGTAATGGCTTTCAGTTGTCATTCATGGTTATCAC
AGTATCATGTTTTCACATACAATGCATTTTGAAACAGTGGATTTTTTTCA
CAGTGATCCTGGCAAAAAGTAAACCGTTTACTGGAATCACGCGATGCGTG
TCGTTTATTCCGGCTAAGTAGAACTTTCAATAGATACCTTAAGCAAGGAA
ACTAATTTTGGCGAGAAATAAATTTTGAGAATTTTGCCTAATGTGTTTCC
AGATATAATTGACAGTTGAAACAAGAATGCCTGTAACTTTTGATATTCTG
ATATAATTTCGAAACCTTTTTTGCTTGTTTTAGAGAATCAAAAGTGCTAT
ATTTGATTGTATTTTTGGTTGAAAAATTCGTGATTTTTAGCGGTTAAATT
TGTGATTGCAAAAATGAGCTTTTTATCTACTTATGCTATAACGTTCTTTT
TTACACCAGTGGAAGTTCAACCTTAGGTTAAGAAGGTTGTCAAATTTAAA
GGCAAATTGAAAAGTCCTTAGGAAGATAATGGGACCCGAAGTACCCCTTG
CTAGCACTTTTTTTCTGTGAAACATCAAATCTCCAAATTTTTAATTTTAC
ATCTCGCCAAAATTTCTCATTGATTAATAACTTAATTTGTTGGTCATTTC
GGAATTGAAAAAAATTCAAAAAGTCAGCATTTATTTTGGATTTTGATGAA
CCTGCAATCAGCTGGACAATGGACCTGAAATAATTCTGGCATCAAGTGAT
TTACGAAAATTTTATATTTATTTTCACGTAAAAAACAAGAGTTCATAAAA
CGAAAAAATACATTTTTTTTTGAATATTAGTTTTACATAATATAAATTTT
ACTTGTATAAATAGAGTAACTTTGTATTCATTACACATTTTCAAACTAAA
AAAATATGGTCCGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017059-exon-sc0000257-1575043694:317015..317034 | TCONS_00017059-exon-sc0000257-1575043694:317015..317034 | Clytia hemisphaerica | exon |
| TCONS_00017059-exon-sc0000257-1575043694:315582..315667 | TCONS_00017059-exon-sc0000257-1575043694:315582..315667 | Clytia hemisphaerica | exon |
| TCONS_00017059-exon-sc0000257-1575043694:313770..314878 | TCONS_00017059-exon-sc0000257-1575043694:313770..314878 | Clytia hemisphaerica | exon |
| TCONS_00017059-exon-sc0000257-1510915933:317015..317034 | TCONS_00017059-exon-sc0000257-1510915933:317015..317034 | Clytia hemisphaerica | exon |
| TCONS_00017059-exon-sc0000257-1510915933:315582..315667 | TCONS_00017059-exon-sc0000257-1510915933:315582..315667 | Clytia hemisphaerica | exon |
| TCONS_00017059-exon-sc0000257-1510915933:313770..314878 | TCONS_00017059-exon-sc0000257-1510915933:313770..314878 | Clytia hemisphaerica | exon |
| TCONS_00017059-exon-sc0000257-1491911889:317015..317034 | TCONS_00017059-exon-sc0000257-1491911889:317015..317034 | Clytia hemisphaerica | exon |
| TCONS_00017059-exon-sc0000257-1491911889:315582..315667 | TCONS_00017059-exon-sc0000257-1491911889:315582..315667 | Clytia hemisphaerica | exon |
| TCONS_00017059-exon-sc0000257-1491911889:313770..314878 | TCONS_00017059-exon-sc0000257-1491911889:313770..314878 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000257 | supercontig | sc0000257:313770..317034 - |
Blast
The following BLAST results are available for this feature:
|
