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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017058 ID=TCONS_00017058|Name=TCONS_00017058|organism=Clytia hemisphaerica|type=transcript|length=1527bpRun BLAST on NCBI transcript from alignment at sc0000257:283575..305523- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00017058 ID=TCONS_00017058|Name=TCONS_00017058|organism=Clytia hemisphaerica|type=transcript|length=21949bp|location=Sequence derived from alignment at sc0000257:283575..305523- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00017058 vs. Swiss-Prot (Human)
Match: IF140 (Intraflagellar transport protein 140 homolog OS=Homo sapiens GN=IFT140 PE=1 SV=1) HSP 1 Score: 256.914 bits (655), Expect = 2.129e-88 Identity = 150/421 (35.63%), Postives = 244/421 (57.96%), Query Frame = 1
Query: 16 MAVYFDYPIHPSEDEEFTNEVLAWHKSSPLLAIGSSSRNGKGIVKFYLDEAEVVDGSSIEKDNTAPVQMVWHPSKKLLAVGWSNGEICIWNESDKDVHEAPIFHKSTLTNIHWNGTGSRLITADQNGLICVWKIDQRGRLQQSPMFQNEVGSPIVQMAFKIAVSIXXXXXXXXXXXXXXXXXXXXLDVFDWQKAGQ-SQLNMSQAESIQMYFGTKDGTVYFMDDRGKCKKCYQLDNGIKHVLYYEVRDIIVVITENLILTQHTLQVDGQFSEVSKAKLGGNATHFQASWA--GSGLLATCSKERLARIIDIDNDQNYILNLNGNSAFVNGETINCLSYNAKKGVLAGGTNKGHIAIWK---NNLFKP----DDPWDLQSPCEVEGGVQSIEWGGGGSLMASITDQSATILSESIMNVHFNQ 1248
MA+Y+D+ I + D + ++WH P LA+ S G V YL++ E V + +E+ + WHP++ +LAVGW GE+ ++N+ DK+ H P+ H + +T + W+ +G+ L++ D+ G++ +W++DQRGR+Q +P+ ++E G + F++ DLV AKAAV+GD+ ALD+F+W+K+ S L M E + + DGTV+++D++GK + D+ I+ + Y E R+ +VV+TENL L+ +T+ +G+ EV K KL G T +A A LL E R DI+ +NYIL+ + F GE +NC+ Y KG+LA GT++G +A+W+ + L P D W LQ+P E++G + I+WG +L+A + S ILSE M+ HF+Q
Sbjct: 1 MALYYDHQIE-APDAAGSPSFISWHPVHPFLAVAYISTTSTGSVDIYLEQGECVPDTHVERPFRV-ASLCWHPTRLVLAVGWETGEVTVFNKQDKEQHTMPLTHTADITVLRWSPSGNCLLSGDRLGVLLLWRLDQRGRVQGTPLLKHEYGKHLTHCIFRLPPP---GEDLVQLAKAAVSGDEKALDMFNWKKSSSGSLLKMGSHEGLLFFVSLMDGTVHYVDEKGKTTQVVSADSTIQMLFYMEKREALVVVTENLRLSLYTVPPEGKAEEVMKVKLSGK-TGRRADIALIEGSLLVMAVGEAALRFWDIERGENYILSPDEKFGFEKGENMNCVCYCKVKGLLAAGTDRGRVAMWRKVPDFLGSPGAEGKDRWALQTPTELQGNITQIQWGSRKNLLAVNSVISVAILSERAMSSHFHQ 415 HSP 2 Score: 88.5817 bits (218), Expect = 2.129e-88 Identity = 39/91 (42.86%), Postives = 64/91 (70.33%), Query Frame = 3
Query: 1251 LQTAPNQLTVRTLPSSESTDLKTDIHIKGVYCTKNFIAIWNSRKVAIYEISDNKSLIRSAGTFNSDAATVAMYEQNIYILEGEKISIRTFQ 1523
+Q +P+ L V L + + L+TD+HI GV+ TK+ +A+WN R+VAI+E+S + IRSAGTF + +AM+E+N+Y +E ++ +RT+Q
Sbjct: 420 MQVSPSLLNVCFLSTGVAHSLRTDMHISGVFATKDAVAVWNGRQVAIFELSG--AAIRSAGTFLCETPVLAMHEENVYTVESNRVQVRTWQ 508 The following BLAST results are available for this feature:
BLAST of TCONS_00017058 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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