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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017054 ID=TCONS_00017054|Name=TCONS_00017054|organism=Clytia hemisphaerica|type=transcript|length=5435bpRun BLAST on NCBI transcript from alignment at sc0000257:256211..281284- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00017054 ID=TCONS_00017054|Name=TCONS_00017054|organism=Clytia hemisphaerica|type=transcript|length=25074bp|location=Sequence derived from alignment at sc0000257:256211..281284- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00017054 vs. Swiss-Prot (Human)
Match: IF140 (Intraflagellar transport protein 140 homolog OS=Homo sapiens GN=IFT140 PE=1 SV=1) HSP 1 Score: 895.96 bits (2314), Expect = 0.000e+0 Identity = 433/898 (48.22%), Postives = 632/898 (70.38%), Query Frame = 2
Query: 2 REARQISISKNLEDAIPSFGSIQCLRCNCNGSKVAFI-SQNNFVTSAFLYIWDVETDTVQCFNFATGEGIEQMDDNLTAA-QEQLTS--------NIKGYVPSDIHWDSDEAKLLVCEAIKSSLDKPSSNERNKPGGGFSRKVSNLKTKEPEPTNIIVTMFSTPDHGLIVQDHFNKQKADYSFLGISTPWFYFAKGSLXXXXXXXXXXXXXXXXRII-QTPMRDFAGLEDCDETVKKAMTNFSYLSAIGNMDEAFKAIKTIKSGSVWENMARMCVKTKRLDVAMVCLGNMGNAIAAKAVRECQREESDVNVQTAMLAIQIGMYKEAEELYKESGRFDLLNEFYQASNQWSKALECADTHDRIHLRTTHYNYGKYLEDEGRIDEAIKQFESSETYRIEVPRMLNEDYTRLENYIRRQNEPKLYKWFAQYLESSSDMDEALQYYTMANDYLARVRIHCFCEEFDRAAELCDETGDKAASYHLARQFDNNDEINKAIHYFSRAQAYSNAIRLAKDNEMDHELMNLALLSSQEDMLDSARYFEMKAME-DKAVILYHKGGRPSKAIDLAFKTEQFGALQLISEDLDENADPEVLRKCAEFFIDHEQYDKAVNLLVVAKKFEEALDMCLDHHITITEEMGEKLTLPKDYEDA--KYRLRLLEKLGEVAFKQGSYHLSTKKFTQAGNKIKAMKALLKSGDTEKIIFFAGVSRQKDIYIMAANYLQSLDWRKDPEIMKGIINFYTKGRALDSLASFYDACAQVEMDEFQNYEKAFGALSESYKCLNKVKPKNQTEHEDRVATIKARLTVMKKFIQAKKSYDSSIDESIKACIALLDDPDVEIAIRVGDVYSFVVSHFTAAQDYQQAYNLMENMRQRFPHLKIQQYIKRKIIERIYNELQIALPSS 2653
REA+ ++L + +P G I LRC+ +GS ++ + S+ + + + +DVE DTV F+F TG Q+D T + EQ T+ +K YVP + WD E +L VCEA++ + + +P G + +++ +I++ F + +HG ++ + F + +S LG+ P++YF + E E+E + +++ + P+RDF GLEDCD+ + AM +FS+ IG+MDEAFK+IK IKS +VWENMARMCVKT+RLDVA VCLGNMG+A A+A+RE + +E ++ + A+LA Q+GM ++AE+LY++ R DLLN+FYQA+ +W +AL+ A+ HDR+HLR+T++ Y +LE A+ +E S+T+R EVPRML+ED LE Y+ + + L++W+AQYLES +MD AL YY +A D+ + VRIHCF +AA++ +ETG+ AASYHLARQ+++ +E+ +A+H+++RAQA+ NAIRL K+N +D +LMNLALLSS EDM+++ARY+E K ++ D+AV+LYHK G SKA++LAF T+QF ALQLI+EDLDE +DP +L +C++FFI+H QY++AV LL+ A+K++EAL +CL +++ITEEM EK+T+ KD D + R LLE++ + +QGSYHL+TKK+TQAGNK+KAM+ALLKSGDTEKI FFA VSRQK+IYIMAANYLQSLDWRK+PEIMK II FYTKGRALD LA FYDACAQVE+DE+QNY+KA GAL+E+YKCL K K K+ + E R+A +++R+ ++K+FIQA+++Y ESIK C LL++PD++ IR+GDVY F+V H+ ++YQ AY +E MR+R P + Y+ + ++ ++ L + LP +
Sbjct: 551 REAKAHCSCRSLAELVPGVGGIASLRCSSSGSTISILPSKADNSPDSKICFYDVEMDTVTVFDFKTG----QIDRRETLSFNEQETNKSHLFVDEGLKNYVPVNHFWDQSEPRLFVCEAVQETPRSQPQSANGQPQDGRAGPAADV---------LILSFFISEEHGFLLHESFPRPATSHSLLGMEVPYYYFTRKPEEADREDEVEPGCHHIPQMVSRRPLRDFVGLEDCDKATRDAMLHFSFFVTIGDMDEAFKSIKLIKSEAVWENMARMCVKTQRLDVAKVCLGNMGHARGARALREAE-QEPELEARVAVLATQLGMLEDAEQLYRKCKRHDLLNKFYQAAGRWQEALQVAEHHDRVHLRSTYHRYAGHLEASADCSRALSYYEKSDTHRFEVPRMLSEDLPSLELYVNKMKDKTLWRWWAQYLESQGEMDAALHYYELARDHFSLVRIHCFQGNVQKAAQIANETGNLAASYHLARQYESQEEVGQAVHFYTRAQAFKNAIRLCKENGLDDQLMNLALLSSPEDMIEAARYYEEKGVQMDRAVMLYHKAGHFSKALELAFATQQFVALQLIAEDLDETSDPALLARCSDFFIEHSQYERAVELLLAARKYQEALQLCLGQNMSITEEMAEKMTVAKDSSDLPEESRRELLEQIADCCMRQGSYHLATKKYTQAGNKLKAMRALLKSGDTEKITFFASVSRQKEIYIMAANYLQSLDWRKEPEIMKNIIGFYTKGRALDLLAGFYDACAQVEIDEYQNYDKAHGALTEAYKCLAKAKAKSPLDQETRLAQLQSRMALVKRFIQARRTYTEDPKESIKQCELLLEEPDLDSTIRIGDVYGFLVEHYVRKEEYQTAYRFLEEMRRRLPLANMSYYVSPQAVDAVHRGLGLPLPRT 1434 The following BLAST results are available for this feature:
BLAST of TCONS_00017054 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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