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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017024 ID=TCONS_00017024|Name=TCONS_00017024|organism=Clytia hemisphaerica|type=transcript|length=328bp
TTCATTTAGAGAATCTTCCGTACGATTTCATACatattaaaagaattttt
tttgacacaaTATTTGAAATTTAGTTGTGTCACTTTGGAGTTGATTTGTT
TTGGGCACTAAGACAGATTCCTTCAAGTTCTACTTTCTAAAGAAAAACCA
AATCCAAAATGGCAGCTTCTCGTGATTACGACCACAATAACACCAATGGT
TACTCCTCATCATCAAGCAACGAAGACGAATACGCTGGATATCCGTTCGA
CTTTTTGGAGACCGATTTCCAGTGTATAATTTGTACGATGGTAATAAGAG
GGTTCACAGAGCTGCCATGCGGACATGC Run BLAST on NCBI transcript from alignment at sc0000257:82670..85780+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017024 ID=TCONS_00017024|Name=TCONS_00017024|organism=Clytia hemisphaerica|type=transcript|length=3111bp|location=Sequence derived from alignment at sc0000257:82670..85780+ (Clytia hemisphaerica)
TTCATTTAGAGAATCTTCCGTACGATTTCATACatattaaaagaattttt
tttgacacaaTATTTGAAATTTAGTTGTGTCACTTTGGAGTTGATTTGTT
TTGGGCACTAAGACAGGTAATTGTTCGATCGAATATTTCTTTCCCTGATT
ATCAATatttaattataaattttttagacaaattctCTTTAGGCAAATTT
GATATTCATTGGGGTGGAAATTAGAATCATAACATTTGACATTTTATGAC
CAAGctattcttgatttttgaaggaTGTACTGAGATTAGAGAGCAAAACT
TTAATTTTTGAAAGACATTAAAAAGTGATCAATATTTCTTGTGTTTCTTT
ACTCAGATCAACTAATTCATTCGTGGAACCAAGTCAATAACAAGTTCAAT
CCCTCCTGCTCACATCGCTTAAGGTTTGTCGAaccaaaatgaaatatttt
agtttagtttccttttctcaagctaaatttgtttttaatttatattattt
tttcgaaaatgtgaGTACAACCATGTCTGACTGACCGGtgcaactttttt
cctcagttagtggggataaaaattatattgttccaaaaTTAAGTAGTATT
GTttttgagtgcaatttttaaacattgaatttcgagtgagaatgaaatca
aagtcaatgtcttagtggggctgaaattccagggtatctTTCCATCGGGA
CGAAATTCTTGCAAAATCTTCCAGTTGGGATAGGGTCCCAGcggatctgt
gacacaggagtGTAAATATAGACACACAGATAAAGATCGTAATACAGAAA
GACGTGACTTGTCAAGCAGTTTTACGTACCTAAGAATGGGCCCATCTCTA
TAGTTACTCCTCTACGGTGGATTCTTCAGCAGTTTGATTGAAATAAAAGG
TGGGGACTTGTTGACTAAACCACTATTTAGAATAGTGTATACTTATAACA
ATTAAACTGGTGTGAAACCGGACCCGATATTTTGTACTGATGCACTGTTA
CTGTAAAAACATAGCCGGCTGTGATTGGTTTAAACAAGCTTAAATTGAAA
ACTGTATTAACTTGACAGTCTGAAGGACTGATCTTAAATCTTAGCCTAGA
CTGTCCCAAGAAAGGGTTCGTAATAGATTACGTAATGtaagaaatggaaa
ttttatcgTAATActgaaaatttataaaagatAACTAGAAAATCAAAGAG
TGAAAAGATTTCAAATGAAACCTAATATACCTTAGGATCCTCTATTGAGA
TGGTATAAATCGTGTAGGAAAAATGTCTAAAGGAAAAACCGCAGTACGAG
CTCCTTTTGATTGCTAAATTTCCTTCTTTCAAGACGTACAAATTAGGGTT
TGCACTGGACATTATTTAGATGTTTTATTGTACATTCGCTTTTATATAAG
ATTTAACCTAAGAACACAAAGACAAGGTTTAAGTTATAATACCATCAAAA
AAGAATTCTTACTGATTGTTCTTTAACGACTTTAATCTCAATAAAGCGGT
ATTAATTATAACAATTGCACtaaaaatacattttatttAATCAGCAACAA
CATAACTCATTTCCTTAACCCTAATCCCTCGATTTCCTATTTTAAACACT
TCTTTGTACACGTagatgattttttattgagGCATAattactaggtcaca
gtgtggatgtaaccACACTGAAAcaaccgccttccatcacgcatcacgct
cgcgaaagagccaTCAAAATCAGGAGTTCAACTCCGAATTCCTAGGTTAC
TTTTCCTCGAAACATCAATTAATTTGGGACAGGGGTGTAACAGATGACAA
TGATTAAGATGAAATTCTTTCCATCGATTTTAATCACTCCGTAGATAAAG
TGTTGGGTCCTTTATTCAAAAGGGATAAAAGGGATGGTATGAATAGTAGA
GACAagctttaaaataaaatgtttttaaatacaCGCCTTAATGCTTAATT
GAATTCACAGTGTGAGGTCACAAGAGatcaaaatttctctctcaaaacaT
ACAAATTAGGGTTTATAATGAACGTTATCAAGATATCcgtttttgttatt
gtttttcaaaagaagTAAATAAAGGCAAGATTTAGAACCATAAAACGCTT
ACCAATATTTCTATTCTTTTCGTCTCACTAGTATCAATTCTCTTTTACAG
TCAAATTTCAATCGGATCAATTTGCTAAGCGACTTTTGACCTTTGACTTT
CATGGcatcttttttattgttttacttttacattatggtttttattttta
atttaatataaTGCATTATTTTAATCTACTCCCTCTTCGGCTTTTATATT
TCCTACATAACACAATCTCTACACTTCTTAACCTTATGTATGccatttat
aaattttattattcaaaatccTATTGATCTAATGTTAGAAAATCatttaa
ttagatttttgatTCATTTGTTTTTTGACGCTCTGGTATAGGACTGGCAC
TTTAAAGCTCAATTAGGCTCAAAATTACCAAATAAAGCAGACAATTTAAG
AAGACTGCTAAATTTAGATCTGCAGGAATATCAAGCATACTTCCAAGGCA
AAAGAACAGAGGGAATCAATAATAGTTCTTTTGaaacactcctgtctcac
atTCGTTTTGAAGCTTTTTTCCCATAGCAGgggaaaattgtatgtgtttt
taATTTAATAGCTTCTCTTTTGATGAAATATAAANaaacgagattagcgt
accactatgaaagaaaccgcctccggcggtcgataagaAATGTAAAAGAA
AAGACAGTTTCTagaaaaggttgttttttcaagaaaatcaagaaaatggC
CACAAAAACTCATGAAAGTAGGATAGTAAAATGAAGGAATTTTCGTGATA
AAATTTCTCTAAGGTTCGAAACTGAGCAATCACTCTTCCGTTCTTTCAGA
TTCCTTCAAGTTCTACTTTCTAAAGAAAAACCAAATCCAAAATGGCAGCT
TCTCGTGATTACGACCACAATAACACCAATGGTTACTCCTCATCATCAAG
CAACGAAGACGAATACGCTGGATATCCGTTCGACTTTTTGGAGACCGATT
TCCAGTGTATAATTTGTACGATGGTAATAAGAGGGTTCACAGAGCTGCCA
TGCGGACATGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017024-exon-sc0000257-1491911889:82670..82785 | TCONS_00017024-exon-sc0000257-1491911889:82670..82785 | Clytia hemisphaerica | exon |
| TCONS_00017024-exon-sc0000257-1510915933:82670..82785 | TCONS_00017024-exon-sc0000257-1510915933:82670..82785 | Clytia hemisphaerica | exon |
| TCONS_00017024-exon-sc0000257-1575043694:82670..82785 | TCONS_00017024-exon-sc0000257-1575043694:82670..82785 | Clytia hemisphaerica | exon |
| TCONS_00017024-exon-sc0000257-1491911889:85569..85780 | TCONS_00017024-exon-sc0000257-1491911889:85569..85780 | Clytia hemisphaerica | exon |
| TCONS_00017024-exon-sc0000257-1510915933:85569..85780 | TCONS_00017024-exon-sc0000257-1510915933:85569..85780 | Clytia hemisphaerica | exon |
| TCONS_00017024-exon-sc0000257-1575043694:85569..85780 | TCONS_00017024-exon-sc0000257-1575043694:85569..85780 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000257 | supercontig | sc0000257:82670..85780 + |
Blast
The following BLAST results are available for this feature:
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