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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016992 ID=TCONS_00016992|Name=TCONS_00016992|organism=Clytia hemisphaerica|type=transcript|length=1902bp
CTGAGTACGGTTTGATAAGAAGTCCCTAATCCAGGACAAGATGTCGCCGT
TGATTCCATAatgttttagtttaatgatcAGTTTACGATGACAGACTTTG
TCGAAAGCCTTACTGAAGTCTGGTAGAATGCTATCCACTTGTTCCTTATT
GTTGATAGATTTTGCTAATGAATCAATTGTTTGAAGAAGTTGAGTCTCAC
AGGATCTCCTTTTGCGAAACCAATGCTTAGTATCCGTAAGAGAGCCATTG
GCTTCCATGTGATTGATGACATGACTGTGTATAACATGTTCTAACACTAA
TTTTCTGCTTTCGAGCGGTTCTTGTTCCCATCTTTGTAAAGGGGGTGATA
GTTGCATGTTTCCAATCTGTAGGTATTCTGCCTTGTTTCAGAGATGCATT
GAAAATTAGCACAAGGCCGTCCGCCAACTGGTCTGCACATTCTTTCAGGA
CTCTTGCACCTATCCCATCTGGTCCACTGGCCCTTGTGAGGGTTCAAATC
TTTTAGAAGTTTGATGATTCCGTTTTTGGTTATGACAAGCTCATCAATTT
TGACACTACTAGGTGGTCCATTAGGGGTTGGGGTGGTACCATCGTCTTAT
GAGAATACACTAGTGAATTGGTCATTAAGAAGTTCAGCAAGTTCTTTCTC
ATCTGTGTGTACGACATTTTTATTATCAACAAACGGTGACACCACAGATA
TCAGTCCGTTTTGACTTTACAAAAGTGAAAAACCTTTTACTGTTCCTTTT
GTCTCCAccaatgttttctttaacaTAATCATGATAAGCTTTCTGGCAAG
TTTTCCTAGCGTTCTTTTCAGCCTGTTGAAATTTGTCCCAATCTCTATCT
AATTTTGTTCTCCGGTACACACGAtatctttgtttcttttgtctGACGGC
TCCTTTATAGGATACATTAAACCAAGGTTGGTTGAAATGTGTAGAAGTAA
TCTTTGTTGGGACATGCTTTGTTTGAGATCTTGATATAATATTTTTAAGA
GATTCCCATGATATATTTATATCTGTTTCTGTTGTGGTCGaagtaaagaa
tttttcaatgTCGTTTTTTATATCTTTCTGCAAAGCGTCAATGTCAGCAC
GATGCCATAGATGGATTTTACGTTGGAtcggtttaattttttttgggtgG
CAGAAAATGTATGCAATTATGGAAGTCTCATGGTCACTAAATCCTGGATG
TGGCTCACAACTTTCAGTAAGGCCAGGGCGGTTTGTAAGTACTAAATCTA
GTGTGTTACCTTTCTGTGTTGTAAAGTTTACAATCTGTGATAGATTGAAT
AGGTCAAATGTTTCGAGAAAGTTCTCATTCAATTTCTTTGAATATTGATT
TCCATTGATGGTATTTGACTCCCAATCAACATCAGGAAGATTAAAATCAC
CACATACCCAATGAGGATTCAGTTTGTACTTTCTTATGACACTGGAAATA
CCTTTGATAAGCTTGGTATTGTAATCCTCTGTACTCTTAGGTGGGCGATA
GCATGCTGTGAATATTACtggtttttcaaagaaagcTACTTTGATTGACA
CGATTTCAGCTTGCTTATTAATCTGTAGTTCCTCGACAAGCAAAGTGTTT
TGGTGATTACACCACCCCAACCATCATTTCGATCATGACGAGAGGCTATA
TAGTTTTTGGGAAGAAATTCTGAGTTCTTTAAGTTGCAGGAGAGATGAGA
TTCTGTGCCAATGAGAATGTCGATATCGTTATTATGAAGGTAATTCCCCA
GCAAGAGTTGTTTGTTCCATATGCTTTCGAAATTGCATACTGAGATACGG
AGACGTTTAGCTTTCTTTTTGGCTATGTTATGGGTATTGGTCGTTACTGC
CTGATGAGCTGTTGGATGATATTGAACTGTCAAATAAGCTATTTGAAATG
TC Run BLAST on NCBI protein sequence of TCONS_00016992-protein >TCONS_00016992-protein ID=TCONS_00016992-protein|Name=TCONS_00016992-protein|organism=Clytia hemisphaerica|type=polypeptide|length=121bp
TFQIAYLTVQYHPTAHQAVTTNTHNIAKKKAKRLRISVCNFESIWNKQLL
LGNYLHNNDIDILIGTESHLSCNLKNSEFLPKNYIASRHDRNDGWGGVIT
KTLCLSRNYRLISKLKSCQSK Run BLAST on NCBI transcript from alignment at sc0000255:252690..254591 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016992 ID=TCONS_00016992|Name=TCONS_00016992|organism=Clytia hemisphaerica|type=transcript|length=1902bp|location=Sequence derived from alignment at sc0000255:252690..254591 (Clytia hemisphaerica)
GACATTTCAAATAGCTTATTTGACAGTTCAATATCATCCAACAGCTCATC
AGGCAGTAACGACCAATACCCATAACATAGCCAAAAAGAAAGCTAAACGT
CTCCGTATCTCAGTATGCAATTTCGAAAGCATATGGAACAAACAACTCTT
GCTGGGGAATTACCTTCATAATAACGATATCGACATTCTCATTGGCACAG
AATCTCATCTCTCCTGCAACTTAAAGAACTCAGAATTTCTTCCCAAAAAC
TATATAGCCTCTCGTCATGATCGAAATGATGGTTGGGGTGGTGTAATCAC
CAAAACACTTTGCTTGTCGAGGAACTACAGATTAATAAGCAAGCTGAAAT
CGTGTCAATCAAAGTAgctttctttgaaaaaccaGTAATATTCACAGCAT
GCTATCGCCCACCTAAGAGTACAGAGGATTACAATACCAAGCTTATCAAA
GGTATTTCCAGTGTCATAAGAAAGTACAAACTGAATCCTCATTGGGTATG
TGGTGATTTTAATCTTCCTGATGTTGATTGGGAGTCAAATACCATCAATG
GAAATCAATATTCAAAGAAATTGAATGAGAACTTTCTCGAAACATTTGAC
CTATTCAATCTATCACAGATTGTAAACTTTACAACACAGAAAGGTAACAC
ACTAGATTTAGTACTTACAAACCGCCCTGGCCTTACTGAAAGTTGTGAGC
CACATCCAGGATTTAGTGACCATGAGACTTCCATAATTGCATACATTTTC
TGCcacccaaaaaaaattaaaccgaTCCAACGTAAAATCCATCTATGGCA
TCGTGCTGACATTGACGCTTTGCAGAAAGATATAAAAAACGAcattgaaa
aattctttacttCGACCACAACAGAAACAGATATAAATATATCATGGGAA
TCTCTTAAAAATATTATATCAAGATCTCAAACAAAGCATGTCCCAACAAA
GATTACTTCTACACATTTCAACCAACCTTGGTTTAATGTATCCTATAAAG
GAGCCGTCagacaaaagaaacaaagataTCGTGTGTACCGGAGAACAAAA
TTAGATAGAGATTGGGACAAATTTCAACAGGCTGAAAAGAACGCTAGGAA
AACTTGCCAGAAAGCTTATCATGATTAtgttaaagaaaacattggTGGAG
ACAAAAGGAACAGTAAAAGGTTTTTCACTTTTGTAAAGTCAAAACGGACT
GATATCTGTGGTGTCACCGTTTGTTGATAATAAAAATGTCGTACACACAG
ATGAGAAAGAACTTGCTGAACTTCTTAATGACCAATTCACTAGTGTATTC
TCATAAGACGATGGTACCACCCCAACCCCTAATGGACCACCTAGTAGTGT
CAAAATTGATGAGCTTGTCATAACCAAAAACGGAATCATCAAACTTCTAA
AAGATTTGAACCCTCACAAGGGCCAGTGGACCAGATGGGATAGGTGCAAG
AGTCCTGAAAGAATGTGCAGACCAGTTGGCGGACGGCCTTGTGCTAATTT
TCAATGCATCTCTGAAACAAGGCAGAATACCTACAGATTGGAAACATGCA
ACTATCACCCCCTTTACAAAGATGGGAACAAGAACCGCTCGAAAGCAGAA
AATTAGTGTTAGAACATGTTATACACAGTCATGTCATCAATCACATGGAA
GCCAATGGCTCTCTTACGGATACTAAGCATTGGTTTCGCAAAAGGAGATC
CTGTGAGACTCAACTTCTTCAAACAATTGATTCATTAGCAAAATCTATCA
ACAATAAGGAACAAGTGGATAGCATTCTACCAGACTTCAGTAAGGCTTTC
GACAAAGTCTGTCATCGTAAACTgatcattaaactaaaacatTATGGAAT
CAACGGCGACATCTTGTCCTGGATTAGGGACTTCTTATCAAACCGTACTC
AG Coding sequence (CDS) from alignment at sc0000255:252690..254591 >TCONS_00016992 ID=TCONS_00016992|Name=TCONS_00016992|organism=Clytia hemisphaerica|type=CDS|length=366bp|location=Sequence derived from alignment at sc0000255:252690..254591 (Clytia hemisphaerica)
ACATTTCAAATAGCTTATTTGACAGTTCAATATCATCCAACAGCTCATCA
GGCAGTAACGACCAATACCCATAACATAGCCAAAAAGAAAGCTAAACGTC
TCCGTATCTCAGTATGCAATTTCGAAAGCATATGGAACAAACAACTCTTG
CTGGGGAATTACCTTCATAATAACGATATCGACATTCTCATTGGCACAGA
ATCTCATCTCTCCTGCAACTTAAAGAACTCAGAATTTCTTCCCAAAAACT
ATATAGCCTCTCGTCATGATCGAAATGATGGTTGGGGTGGTGTAATCACC
AAAACACTTTGCTTGTCGAGGAACTACAGATTAATAAGCAAGCTGAAATC
GTGTCAATCAAAGTAg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016992-exon-sc0000255-1491911889:252690..254591 | TCONS_00016992-exon-sc0000255-1491911889:252690..254591 | Clytia hemisphaerica | exon |
| TCONS_00016992-exon-sc0000255-1510915933:252690..254591 | TCONS_00016992-exon-sc0000255-1510915933:252690..254591 | Clytia hemisphaerica | exon |
| TCONS_00016992-exon-sc0000255-1575043694:252690..254591 | TCONS_00016992-exon-sc0000255-1575043694:252690..254591 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000255 | supercontig | sc0000255:252690..254591 . |
Blast
The following BLAST results are available for this feature:
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