TCONS_00016981 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016981
Unique NameTCONS_00016981
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length703

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016981 ID=TCONS_00016981|Name=TCONS_00016981|organism=Clytia hemisphaerica|type=transcript|length=703bp
NNTGCATGAAATTTGCCGCCAGCAATTTAAAATAGCCAGTACCATTTCAA
CTTACTTGGCTACCTATCATGGAAGGAAAATACAAGATTCATTCATTGAC
CTTGGAAGCTATTATGAAGAATATGTGAAAGAGAAGAAGAAAGCAATTAA
TTTGTACTTATATGTAGACACACCATACATGAAAATTGGGTTCAAGTGGG
CATTAGAACAAAACAAAAGTAGTGATGATGACAATGATGACACTTACCAA
tcaGGCAGTAGTTCAACTTTGATAATATGTCCTATTTGTCATTGTACTTC
ACCACCAAACACAGAATGTGTACGATGCGTCCAAAATAGTGAGCTTGAAG
AAAGTCTTGCTGCTGACCAAGTACGGCCCATGGAGATTGAAGATGGTCGA
GTTGATGATGGTCAATTCGAAGATGATCAATTCGAAGATGGTCAATTCGA
AGATGGTCAAGTTGATGATGGTCAATTCGAAGATGGTCAAGTTGATGATG
GTCAAGTTAGAAATGCGAGGCTCAACTTTTTTAACAACATTAGAATGTCA
CAGGCTGAGCCCATACAACCAACCACATCATTTATCAATTCTGTGCAAAC
TCCaaTAAGTGCTGTACCATCACATCCCAGACAGCCAACCACATCATCTG
TCAATTCTGTGCAAACACCtgcAACTGGGGCTATTGACACCACCTCCGAT
CTT
Run BLAST on NCBI

transcript from alignment at sc0000255:348279..351912-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016981 ID=TCONS_00016981|Name=TCONS_00016981|organism=Clytia hemisphaerica|type=transcript|length=3634bp|location=Sequence derived from alignment at sc0000255:348279..351912- (Clytia hemisphaerica)
NNTGCATGAAATTTGCCGCCAGCAATTTAAAATAGCCAGTACCATTTCAA
CTTACTTGGCTACCTATCATGGAAGGAAAATACAAGATTCATTCATTGAC
CTTGGAAGCTATTATGAAGAATATGTGAAAGAGAAGAAGAAAGCAATTAA
TTTGTACTTATATGTAGACACACCATACATGAAAATTGGGTTCAAGTGGG
CATTAGAACAAAACAAAAGTAGTGATGATGACAATGATGACACTTACCAA
GTAAGTTTATCTAAAAAACAAAACCTTTTTTTAATTAAAATTCTCTGATT
TGTATAATTCAAGTTGCGCGAAAAATACAACTGTGTGAAAAAAATTTAGA
GGGGGCCTTTTTTTTGGACATGATGAAAAGATTTTGTCGAATGGAAGTAT
TTCAAAAGTTCTCAAAATTTTTTGTTTTGGAGGGGGATGTACGAACAAAG
GGTTGAGTAAAATTCTCTTTTATTTTCAATTTTTCAGTCAGGCAGTAGTT
CAACTTTGATAATATGTCCTATTTGTCATTGTACTTCACCACCAAACACA
GAATGTGTACGATGCGTCCAAAATAGTGAGCTTGAAGAAAGTCTTGCTGC
TGACCAAGTAAGTATACCTTAAGGGAACCAAGTAAGTATACCTTATTTGC
ATTTGACAGTTTATAAAAATTGGCCAATCAAAATGCCTTAAGACCTGTCA
ATCAAACTGTTTTATACAAATATTATAGGAATTACTTTCAATGGTGCCTT
TCAAATGAACCTAGCTGTTATTGAGCCAGTTTACACCCTAGATGAGGTTT
CTTGTTACACTCAAAAAGAGTCATTCTTTTGAGGACCTTGATGGCATCTT
TGATGGAAGTTTGTGTAGGTGGCAGGATTGGGTCATCAATTTTTTAGACA
TCAAAAAAGCTGTGCGATTTGAAAAAATTTTCGAATTACATGAGCTTTCT
CACAATGTTTTCAGGCTTAGCCCTAAGTCTGAAGGGACCGAAGATTTTGT
TTGAATTATATGAGTTTTCAAATTATAGGAATTACATGAGTTTAACTGTA
ATCATAACTTTCTTTGCTTTCTCTTTATAGGTACGGCCCATGGAGATTGA
AGATGGTCGAGTTGATGATGGTCAATTCGAAGATGATCAATTCGAAGATG
GTCAATTCGAAGATGGTCAAGTTGATGATGGTCAATTCGAAGATGGTCAA
GTTGATGATGGTCAAGTTAGAAATGCGAGGCTCAACTTTTTTAACAACAT
TAGAATGTCACAGGCTGAGCCCATACAACCAACCACATCATTTATCAATT
CTGTGCAAACTCCGTAAGATTTAACTTCTACTGGAATTTTTTTAGTTCTG
TTCAACTTGTTTGTACTTATTAGATGTTAGTACTTATTAGAAAGACTGTT
TAAACATTATAAGAATAATGAAAATTTTTTGTTTACAGAATAAGTGCTGT
ACCATCACATCCCAGACAGCCAACCACATCATCTGTCAATTCTGTGCAAA
CACTNCTGCTGACCAAGTAAGTATACCTTAAGGGAACCAAGTAAGTATAC
CTTATTTGCATTTGACAGTTTATAAAAATTGGCCAATCAAAATGCCTAAA
GACCTATCAATCAAACTGTTTTATTCAAATATTGTAGGAATTACTTTCAA
TGATGCCTTTCAAATGTACCTAGCTGTTATTGAGCCAGTTTACACCCTAG
ATGAGGTTTCTTGTTACACTCAAAAAGAGTCATTCTTTTGAGGACCTTGA
TGGCATCTTTGATGGAAGTTTGTGTAGGTGGCAGGATTGGGTCATCAATT
TTTTAGACATCAAAAGTCAAAAAATTCGAATTACATGAGCAAAAAAGCTG
TGCGATTTGAGAATATTTTCGAATTACATGAGCTTTCTCACAAGGTTTTC
AGGCTTANTCACATCCCAGACAGCCAACCACATCATCTGTCAATTCTGTG
CAAACTTCGTAAGATTTAACTTCTACTGGAATTATTTTTCAACTCTGTTC
CATTTACTAAATATTCAAAGGCTTCAAAGTAAACTTGCAACAATCGATGT
TTGTACGTATAAGAAAGACTGTTAAACATTATAAGAATAATGAGAATTTT
TTGTTTACAGAATAAGTGCTGTACCATCACATCCCAGACAGTCAACCACA
TCATTTGTCAATTCTGTGCAAACACCGTAAGATTTAACTTCTACTGGAAT
TATTTTTCAACTCTGTTCAATTTACTACATATTCAAAGGCTTCAAAGTAA
ACTTGCAACAATTGATGTTTGTACTTATAAGAAAGACTGTTAAACATTAT
AAGAATAATGAGAATTCTTTGTTTACAGAATAAGTGCTGTATCATCACAT
CCTAGACAGCCAACCACATCATCTGTCAATTCTGTGCAAACACCGTAAGA
TTTAACTTCTACTGGAATTTTTTAGATTTATAGGCTATAAAGTCTTTGGG
CTTTTTCTTGGGTTGTTCTTATCTCTTGGCTGCTTTGGGGCTTCTTAGGG
GAAAGAATGCACCCCATAATAGTCCTAATGGAGTCTTTTAGAGATTCAAT
ATAAATTTCCCAGAATTTCCGTATAATTATTTACAAAAGATAAGTACATC
ATTCTTCGATCCCTAATTCATACACTTAGAGCTTAAAAGCATTTTCATGA
TAACCAAACGAAAAATGTCCTTTAACTATATTTATGTTTTGTTTTTTATC
AACGTAAATTATTTCATTTGGAAATTATTTTGTTGTAAAACAATGAAAGG
CTATAATTCAAATAGTGGGTAACCATAGTAACAAAGCAACCATAGTAAAC
GTTCCAGGTGTTATTATTTTCAAGAAATCATATTTATAAGAGTAAGGCAA
AGGAGAGAACGAAAAACGAAATAACTCGAAAAACTAACGCACATCGCTGA
AGAAAAAACTATTTAAAATATCTTTGTGGTTCCCAAAGCTAAAAGCCATA
AGAAGTAACCAGAAAGAATGAAAATACACCACTCTCAGTACTCTTTTTTA
TAAGTATACAAGAAAATTCGCTTAAGCTTGATATACTTAGCAAATTTTTA
TTTTTGCTTAGATTTAGACCTCTTGAATTCTATTTATTGGCTTCATTCGG
TTAAATGCCAAAGATCGGTGGTATTATTGAGAAAAGACATGACTCAAGAA
ATGATTTGGACAGTTAAGATGAACTGCCTGCCAGAAATGGCAGAAGGCCT
AGAATAGACACTTTTAATGAGTTTTAGAAGTCATTAACAGATGTGAAAAG
ACGAGAGAATGATAAATGCGCTTGGGGAATTTAAATTAGATTCAGAGTTG
TAATCAGAACCATATAAGTAAAATTTCCGTTTTTACATCCACTCGAGTTT
CTTTGTTACTTATTCTCTTGTTTCTCTGTTTGTTTGTTTCTCATTTCCAG
TCAGTGTCGGTTCTCTCCTAAATTATTTTTCCCTGGTATGTTATTCAATT
TGTTAACTTTTTGACAAAAGATGTAGGAAACAACACAATCACAATTCATA
ACAGTGTAAATGGAAGCCCCTCTGATCGAGTGACGAAAGAGAACTTTAAA
TTACTTGATTTACCTGGTCTGAACTGAATGGTGTATATTTTTCATTTTAG
TGCAACTGGGGCTATTGACACCACCTCCGATCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009503XLOC_009503Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016981-exon-sc0000255-1575043694:351663..351912TCONS_00016981-exon-sc0000255-1575043694:351663..351912Clytia hemisphaericaexon
TCONS_00016981-exon-sc0000255-1575043694:351306..351425TCONS_00016981-exon-sc0000255-1575043694:351306..351425Clytia hemisphaericaexon
TCONS_00016981-exon-sc0000255-1575043694:350600..350832TCONS_00016981-exon-sc0000255-1575043694:350600..350832Clytia hemisphaericaexon
TCONS_00016981-exon-sc0000255-1575043694:350455..350474TCONS_00016981-exon-sc0000255-1575043694:350455..350474Clytia hemisphaericaexon
TCONS_00016981-exon-sc0000255-1575043694:349982..350000TCONS_00016981-exon-sc0000255-1575043694:349982..350000Clytia hemisphaericaexon
TCONS_00016981-exon-sc0000255-1575043694:349519..349545TCONS_00016981-exon-sc0000255-1575043694:349519..349545Clytia hemisphaericaexon
TCONS_00016981-exon-sc0000255-1575043694:348279..348312TCONS_00016981-exon-sc0000255-1575043694:348279..348312Clytia hemisphaericaexon
TCONS_00016981-exon-sc0000255-1510915933:351663..351912TCONS_00016981-exon-sc0000255-1510915933:351663..351912Clytia hemisphaericaexon
TCONS_00016981-exon-sc0000255-1510915933:351306..351425TCONS_00016981-exon-sc0000255-1510915933:351306..351425Clytia hemisphaericaexon
TCONS_00016981-exon-sc0000255-1510915933:350600..350832TCONS_00016981-exon-sc0000255-1510915933:350600..350832Clytia hemisphaericaexon
TCONS_00016981-exon-sc0000255-1510915933:350455..350474TCONS_00016981-exon-sc0000255-1510915933:350455..350474Clytia hemisphaericaexon
TCONS_00016981-exon-sc0000255-1510915933:349982..350000TCONS_00016981-exon-sc0000255-1510915933:349982..350000Clytia hemisphaericaexon
TCONS_00016981-exon-sc0000255-1510915933:349519..349545TCONS_00016981-exon-sc0000255-1510915933:349519..349545Clytia hemisphaericaexon
TCONS_00016981-exon-sc0000255-1510915933:348279..348312TCONS_00016981-exon-sc0000255-1510915933:348279..348312Clytia hemisphaericaexon
TCONS_00016981-exon-sc0000255-1491911889:351663..351912TCONS_00016981-exon-sc0000255-1491911889:351663..351912Clytia hemisphaericaexon
TCONS_00016981-exon-sc0000255-1491911889:351306..351425TCONS_00016981-exon-sc0000255-1491911889:351306..351425Clytia hemisphaericaexon
TCONS_00016981-exon-sc0000255-1491911889:350600..350832TCONS_00016981-exon-sc0000255-1491911889:350600..350832Clytia hemisphaericaexon
TCONS_00016981-exon-sc0000255-1491911889:350455..350474TCONS_00016981-exon-sc0000255-1491911889:350455..350474Clytia hemisphaericaexon
TCONS_00016981-exon-sc0000255-1491911889:349982..350000TCONS_00016981-exon-sc0000255-1491911889:349982..350000Clytia hemisphaericaexon
TCONS_00016981-exon-sc0000255-1491911889:349519..349545TCONS_00016981-exon-sc0000255-1491911889:349519..349545Clytia hemisphaericaexon
TCONS_00016981-exon-sc0000255-1491911889:348279..348312TCONS_00016981-exon-sc0000255-1491911889:348279..348312Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000255supercontigsc0000255:348279..351912 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0.408608	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016981 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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