TCONS_00016969 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016969
Unique NameTCONS_00016969
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1520

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016969 ID=TCONS_00016969|Name=TCONS_00016969|organism=Clytia hemisphaerica|type=transcript|length=1520bp
CGGTCCTAAAACCATCTCAAGGTAGTATGTTTGGAGCATTTTTTTCTGTT
AATTGTTGTTTTAGATGTTATGTACACAACTCTGTTTTTAAGGGATGCAT
CTGGCTGGCATATTTGTTTAGCCTTCTCTCTAAGCAAAATGCTTTTTCCT
GTTCCAAAATTTCCCTGCAAAATGATTCTCTTAAACTTTGGATCATCTGA
TTTGAATGCAGCTAATTGCTGGTTGGAGTAGAAAATCAAGTTATCGGAAG
TGGATACATTGTTGATTGCCTGACTAATGTAATCTACCCAGTTGGTGTGA
GTAACAGGTACAGAAACGTGTACTGCGAACACAATAATGCGTAATACTTT
CTAAAGGTTTGCCAAAGAGTCGGTCAAGTCAGTTTGGTTGTTGATCATAG
GGAATCCCTTCCATACATTTGATAACCAATCTCGAATATCAGTCATAGTA
TTGATGTAGTGTGCGCTTTTGAAGTTATGTGAATCTTGTTGGACACAGAT
AACCGGGAAGAACTGCCATCCTGTACCAAACTGGTCCCCAATGTCTCTTC
CAACGATGTTCGATATTTTTCAAGCTGTGAACATGCTTTTAGAAGCGCCT
GATCAGTTGATGTTCTTTTAAGTTCAATACCGATCACCAATTTTCTCGAA
TGGGACAAGATGAGAAGGTCGTATTCCCGATGTTTCTTGTTTCCAACGTT
TGTCATGAATTGTGAAGATTGTAGAATGACCAGGTCGTTCAAAGTTCCAT
CCTTAATCGATTGAAGCTGGTCAAAAAACCAATGCTCGACCTCCTCTCCT
AGGTCACTCAATTGTAAATCCCAAAGCCATTTAATATTGGAATCCTCACA
AACGTTGGGTTCGCTCACCAATTTGTTGTTAACGTCTGCTTTAACTTTAT
TTCTGCCTCGCGGTAGTTTGACTTTGACGCTGCATTGTTGAAGAAATATT
TCGAGATTTGATCCATTCTTCGACTGTTGTTGTAGTGcaattaaacattt
ttgaatGAAGATATCAATATCGATGGTCATTTGTGGGATGTTCTGGTCGT
TCTGAAGCTCCTTGACTACAAGATgcttaattttactttttgtaaTCCAC
TGGTCAAATTCTTTACTGTTAATCTCGGTCAAAGTAGTACCACTGACAGA
TTTCTGCGTCTGTATAAAAGCTTGAAAGTCAGTTGCAAACCAATGTCTAG
GGGAATTGGTCGACatattttccaaagttttttcaaCATCTTTCACAACA
TCATAATCCAGAATGGAAACTGACGATTCTTTGGtatattgatttgattt
aaaCACGGGTGGTATGAATAATGCCTCTTGGTAATTCTGTGAATCGAACA
AGAATGATTCGACATATTCCCTTTCCAAAAGATAGTCAGCTGTGTCAAAG
GGATCGTTCATTGTTAAACCATTACCAAGGTTGTATTTCTTAAACTGATT
CTTAAACTGATTTTCCTGACGATGAAAAACACCTTGACTGTTCCTGGTAA
TTTGTTGAAATAAAGATTTC
Run BLAST on NCBI

transcript from alignment at sc0000255:70312..71927-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016969 ID=TCONS_00016969|Name=TCONS_00016969|organism=Clytia hemisphaerica|type=transcript|length=1616bp|location=Sequence derived from alignment at sc0000255:70312..71927- (Clytia hemisphaerica)
CGGTCCTAAAACCATCTCAAGGTAGTATGTTTGGAGCATTTTTTTCTGTT
AATTGTTGTTTTAGATGTTATGTACACAACTCTGTTTTTAAGGGATGCAT
CTGGCTGGCATATTTGTTTAGCCTTCTCTCTAAGCAAAATGCTTTTTCCT
GTTCCAAAATTTCCCTGCAAAATGATTCTCTTAAACTTTGGATCATCTGA
TTTGAATGCAGCTAATTGCTGGTTGGAGTAGAAAATCAAGTTATCGGAAG
TGGATACATTGTTGATTGCCTGACTAATGTAATCTACCCAGTTGGTGTGA
GTAACAGGTACAGAAACGTGTACTGCGAACACAATAATGCGTAATACTTT
CTAAAGGTTTGCCAAAGAGTCGGTCAAGTCAGTTTGGTTGTTGATCATAG
GGAATCCCTTCCATACATTTGATAACCAATCTCGAATATCAGTCATAGTA
TTGATGTAGTGTGCGCTTTTGAAGTTATGTGAATCTTGTTGGACACAGAT
AACCGGGAAGAACTGCCATCCTGTACCAAACTGGTCCCCAATGTCTCTTC
CAACGATGTTCGATATTTTTCAAGCTGTGAACATGCTTNACAGATAACCG
GGAAGAACTGCCATCCTGAACCAAACTGGTCCCCCAATGTCTCTTCCAAC
GATGTTCGATATTTGTCAAGCTGTTCACATGCTTTTAGAAGCGCCTGATC
AGTTGATGTTCTTTTAAGTTCAATACCGATCACCAATTTTCTCGAATGGG
ACAAGATGAGAAGGTCGTATTCCCGATGTTTCTTGTTTCCAACGTTTGTC
ATGAATTGTGAAGATTGTAGAATGACCAGGTCGTTCAAAGTTCCATCCTT
AATCGATTGAAGCTGGTCAAAAAACCAATGCTCGACCTCCTCTCCTAGGT
CACTCAATTGTAAATCCCAAAGCCATTTAATATTGGAATCCTCACAAACG
TTGGGTTCGCTCACCAATTTGTTGTTAACGTCTGCTTTAACTTTATTTCT
GCCTCGCGGTAGTTTGACTTTGACGCTGCATTGTTGAAGAAATATTTCGA
GATTTGATCCATTCTTCGACTGTTGTTGTAGTGCAATTAAACATTTTTGA
ATGAAGATATCAATATCGATGGTCATTTGTGGGATGTTCTGGTCGTTCTG
AAGCTCCTTGACTACAAGATGCTTAATTTTACTTTTTGTAATCCACTGGT
CAAATTCTTTACTGTTAATCTCGGTCAAAGTAGTACCACTGACAGATTTC
TGCGTCTGTATAAAAGCTTGAAAGTCAGTTGCAAACCAATGTCTAGGGGA
ATTGGTCGACATATTTTCCAAAGTTTTTTCAACATCTTTCACAACATCAT
AATCCAGAATGGAAACTGACGATTCTTTGGTATATTGATTTGATTTAAAC
ACGGGTGGTATGAATAATGCCTCTTGGTAATTCTGTGAATCGAACAAGAA
TGATTCGACATATTCCCTTTCCAAAAGATAGTCAGCTGTGTCAAAGGGAT
CGTTCATTGTTAAACCATTACCAAGGTTGTATTTCTTAAACTGATTCTTA
AACTGATTTTCCTGACGATGAAAAACACCTTGACTGTTCCTGGTAATTTG
TTGAAATAAAGATTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009500XLOC_009500Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016969-exon-sc0000255-1575043694:71346..71927TCONS_00016969-exon-sc0000255-1575043694:71346..71927Clytia hemisphaericaexon
TCONS_00016969-exon-sc0000255-1575043694:70312..71249TCONS_00016969-exon-sc0000255-1575043694:70312..71249Clytia hemisphaericaexon
TCONS_00016969-exon-sc0000255-1510915933:71346..71927TCONS_00016969-exon-sc0000255-1510915933:71346..71927Clytia hemisphaericaexon
TCONS_00016969-exon-sc0000255-1510915933:70312..71249TCONS_00016969-exon-sc0000255-1510915933:70312..71249Clytia hemisphaericaexon
TCONS_00016969-exon-sc0000255-1491911889:71346..71927TCONS_00016969-exon-sc0000255-1491911889:71346..71927Clytia hemisphaericaexon
TCONS_00016969-exon-sc0000255-1491911889:70312..71249TCONS_00016969-exon-sc0000255-1491911889:70312..71249Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000255supercontigsc0000255:70312..71927 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.364941	0.144191	0.462321	0.674011	0.130564	0.232066	0.230241	0.300185	1.47461	1.52687	1.19596	3.09891	0.343198	0.969661	1.49999	0.860704	0.652593	0.642798	0.23936	0.493928	0.946375	1.0535	0.204937	0.314656	0.925408	0.892592
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016969 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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