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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016968 ID=TCONS_00016968|Name=TCONS_00016968|organism=Clytia hemisphaerica|type=transcript|length=3860bpRun BLAST on NCBI protein sequence of TCONS_00016968-protein >TCONS_00016968-protein ID=TCONS_00016968-protein|Name=TCONS_00016968-protein|organism=Clytia hemisphaerica|type=polypeptide|length=555bp MPGIISYFQFSTIHILTHMVILWSADTTQSYQYLAQQWNENEIKVPPPLLRun BLAST on NCBI transcript from alignment at sc0000255:48283..119170- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00016968 ID=TCONS_00016968|Name=TCONS_00016968|organism=Clytia hemisphaerica|type=transcript|length=70888bp|location=Sequence derived from alignment at sc0000255:48283..119170- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000255:48283..119170- >TCONS_00016968 ID=TCONS_00016968|Name=TCONS_00016968|organism=Clytia hemisphaerica|type=CDS|length=18348bp|location=Sequence derived from alignment at sc0000255:48283..119170- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00016968 vs. Swiss-Prot (Human)
Match: GAPR1 (Golgi-associated plant pathogenesis-related protein 1 OS=Homo sapiens GN=GLIPR2 PE=1 SV=3) HSP 1 Score: 80.4925 bits (197), Expect = 1.339e-16 Identity = 51/131 (38.93%), Postives = 73/131 (55.73%), Query Frame = 3
Query: 825 ECVYAHNQVRRKHGLPNLLWDPELSYNAEEWALILASRSAGLIHSKQPSNRNGIYYGENLFYGMGSVYGHNCSEAVYAWYSEIRNFEWSNPRYSSAIGHFYQLVYKDTKYFGVGIACAENVEESFIVARYL 1217
E + AHN+ R+KHG+P L L+ A++++ LAS L HS + S GENL + + Y E WYSEI+N+ + P ++S GHF +V+K+TK GVG A A + SF+VARY
Sbjct: 12 EVLKAHNEYRQKHGVPPLKLCKNLNREAQQYSEALASTRI-LKHSPESSRGQ---CGENLAW---ASYDQTGKEVADRWYSEIKNYNFQQPGFTSGTGHFTAMVWKNTKKMGVGKASASD-GSSFVVARYF 134 The following BLAST results are available for this feature:
BLAST of TCONS_00016968 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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