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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016959 ID=TCONS_00016959|Name=TCONS_00016959|organism=Clytia hemisphaerica|type=transcript|length=515bp
GGGAGCTGCAAAAGCAACATCTGCAACAAAGTATGCCAAGAAATATGGTC
TATTtgcaaaacaaacaatatttgGGTCACATGCACCTATATACCAGTTT
GGTAGGGAAAGTACTACAGAAGCTCAAAACCGACCAATGCCAAGGATTGA
TAGTGACACCAGATTGGTCAACGCAAACTTGGTACACGACACTGACTTCA
ATGACGGTCTCAGAAACCATAACAATAACACCTGGACAACAAGTTCTTGT
TATTCCAGAAGACCCTCAGCGGCTACATCCTCTCTGGAGGAAACTGAAAC
TCAGAGCTTGCATAGTCTCAGGACTGAATACTTAAAACAAGATCAGCAAC
TACATCCAAGTGCAAAGCCAGTAACATGTCGTTGACTGAAATACTGAAGA
AGGCGGGTTGGTCTAACGCAAGAACATTCGCCAAGCACTACAACAAAATA
ATCGTCGATGACGTTAACCTCATGGAAGTCTTAACACATTAATACAAAAT
ATTATTTAACAACAC Run BLAST on NCBI protein sequence of TCONS_00016959-protein >TCONS_00016959-protein ID=TCONS_00016959-protein|Name=TCONS_00016959-protein|organism=Clytia hemisphaerica|type=polypeptide|length=127bp
GAAKATSATKYAKKYGLFAKQTIFGSHAPIYQFGRESTTEAQNRPMPRID
SDTRLVNANLVHDTDFNDGLRNHNNNTWTTSSCYSRRPSAATSSLEETET
QSLHSLRTEYLKQDQQLHPSAKPVTCR Run BLAST on NCBI transcript from alignment at sc0000255:229532..230927+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016959 ID=TCONS_00016959|Name=TCONS_00016959|organism=Clytia hemisphaerica|type=transcript|length=1396bp|location=Sequence derived from alignment at sc0000255:229532..230927+ (Clytia hemisphaerica)
GGGAGCTGCAAAAGCAACATCTGCAACAAAGTATGCCAAGAAATATGGTC
TATTtgcaaaacaaacaatatttgGGTCACATGCACCTATATACCAGGTA
AGGAAAATATAGAAGTTGATGAAGAATCCAGAAAAGACTATAGTGACAGC
AACTGGATGATAAATGACAAATGACCCTTATTTCTTTCCTCCCTTCAGTT
TGGTAGGGAAAGTACTACAGAAGCTCAAAACCGACCAATGCCAAGGATTG
ATAGTGACACCAGATTGGTCAACGCAAACTTGGTACACGACACTGACTTC
AATGACGGTCTCAGAAACCATAACAATAACACCTGGACAACAAGTTCTTG
TTATTCCAGAAGACCCTCAGCGGCTACATCCTCTCTGGAGGAAACTGAAA
CTCAGAGCTTGCATAGTCTCAGGACTGAATACTTAAAACAAGGTATGTCT
AATACTACTACATATATTATAATGAACAGTTAGAGGGAATCAACCCAAAA
ACAATATGAACCTGCTCTTAAAAAATGGCTTAAGTTTTGTGGGAACTCTA
TAGATCCATTTAATCCAAAGATAAACGAAGGACTTGAATTTCTTTCTCAA
TTATACAAAGATGGGGCAAGTTTCCATGTTATTAGCAATGCTAGAAGTGC
ACTCTCTATTTTTGTAAAACCCTTCGAAAATGTTACATTTGGAAGACTAC
CTATAGTAAAACGATACATAAAAGGTGTATTCGAAAGCCGACCAACCTTC
CCAAAATCATGTATCACCTGGGATGTAAATATTCTTTTTAGCTATTTCAG
ATCCCTTCAAGATGTTGAAAATCTTAACCTAAAACTTTTATCCTTAAAGC
TAGCGAGCCTCATCGCTATTGCATCAGGAGGACAAAGAGTTCAAACTCTT
CAATCTTTGGACATTAAAACATCAACTTCTTAGCAGATAAAGTTATTATT
CCCATAACATCAAAAATCAAACAGAATAGACCATCAAAACACATAGAACC
CTTAGAGCTAAAAGGTTTCGCCCAAGAACCAAAACTCTGTCCAATCCTCC
ATTTAAAACACTATATAGCAAGAGTTGAGAAACTTAGAAATTCAGACAAT
CTTTTTGTTAGCTACATCAGACCACACAAAACGGTTTCTAAAGATACTAT
ATCTAGATGGTGCAAACAAATGATTGCCAACGCAGGCATTGGCACTAATT
TATATACTGCTCATTCCCACAGATCAGCAACTACATCCAAGTGCAAAGCC
AGTAACATGTCGTTGACTGAAATACTGAAGAAGGCGGGTTGGTCTAACGC
AAGAACATTCGCCAAGCACTACAACAAAATAATCGTCGATGACGTTAACC
TCATGGAAGTCTTAACACATTAATACAAAATATTATTTAACAACAC Coding sequence (CDS) from alignment at sc0000255:229532..230927+ >TCONS_00016959 ID=TCONS_00016959|Name=TCONS_00016959|organism=Clytia hemisphaerica|type=CDS|length=1152bp|location=Sequence derived from alignment at sc0000255:229532..230927+ (Clytia hemisphaerica)
GGAGCTGCAAAAGCAACATCTGCAACAAAGTATGCCAAGAAATATGGTCT
ATTtgcaaaacaaacaatatttgGGTCACATGCACCTATATACCAGTTTG
GTAGGGAAAGTACTACAGAAGCTCAAAACCGACCAATGCCAAGGATTGAT
AGTGACACCAGATTGGTCAACGCAAACTTGGTACACGACACTGACTTCAA
TGACGGTCTCAGAAACCATAACAATAACACCTGGACAACAAGTTCTTGTT
ATTCCAGAAGACCCTCAGCGGCTACATCCTCTCTGGAGGAAACTGAAACT
CAGAGCTTGCATAGTCTCAGGACTGAATACTTAAAACAAGATCAGCAACT
ACATCCAAGTGCAAAGCCAGTAACATGTCGTTGAGGAGCTGCAAAAGCAA
CATCTGCAACAAAGTATGCCAAGAAATATGGTCTATTtgcaaaacaaaca
atatttgGGTCACATGCACCTATATACCAGTTTGGTAGGGAAAGTACTAC
AGAAGCTCAAAACCGACCAATGCCAAGGATTGATAGTGACACCAGATTGG
TCAACGCAAACTTGGTACACGACACTGACTTCAATGACGGTCTCAGAAAC
CATAACAATAACACCTGGACAACAAGTTCTTGTTATTCCAGAAGACCCTC
AGCGGCTACATCCTCTCTGGAGGAAACTGAAACTCAGAGCTTGCATAGTC
TCAGGACTGAATACTTAAAACAAGATCAGCAACTACATCCAAGTGCAAAG
CCAGTAACATGTCGTTGAGGAGCTGCAAAAGCAACATCTGCAACAAAGTA
TGCCAAGAAATATGGTCTATTtgcaaaacaaacaatatttgGGTCACATG
CACCTATATACCAGTTTGGTAGGGAAAGTACTACAGAAGCTCAAAACCGA
CCAATGCCAAGGATTGATAGTGACACCAGATTGGTCAACGCAAACTTGGT
ACACGACACTGACTTCAATGACGGTCTCAGAAACCATAACAATAACACCT
GGACAACAAGTTCTTGTTATTCCAGAAGACCCTCAGCGGCTACATCCTCT
CTGGAGGAAACTGAAACTCAGAGCTTGCATAGTCTCAGGACTGAATACTT
AAAACAAGATCAGCAACTACATCCAAGTGCAAAGCCAGTAACATGTCGTT
GA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016959-exon-sc0000255-1491911889:229532..229628 | TCONS_00016959-exon-sc0000255-1491911889:229532..229628 | Clytia hemisphaerica | exon |
| TCONS_00016959-exon-sc0000255-1510915933:229532..229628 | TCONS_00016959-exon-sc0000255-1510915933:229532..229628 | Clytia hemisphaerica | exon |
| TCONS_00016959-exon-sc0000255-1575043694:229532..229628 | TCONS_00016959-exon-sc0000255-1575043694:229532..229628 | Clytia hemisphaerica | exon |
| TCONS_00016959-exon-sc0000255-1491911889:229730..229973 | TCONS_00016959-exon-sc0000255-1491911889:229730..229973 | Clytia hemisphaerica | exon |
| TCONS_00016959-exon-sc0000255-1510915933:229730..229973 | TCONS_00016959-exon-sc0000255-1510915933:229730..229973 | Clytia hemisphaerica | exon |
| TCONS_00016959-exon-sc0000255-1575043694:229730..229973 | TCONS_00016959-exon-sc0000255-1575043694:229730..229973 | Clytia hemisphaerica | exon |
| TCONS_00016959-exon-sc0000255-1491911889:230754..230927 | TCONS_00016959-exon-sc0000255-1491911889:230754..230927 | Clytia hemisphaerica | exon |
| TCONS_00016959-exon-sc0000255-1510915933:230754..230927 | TCONS_00016959-exon-sc0000255-1510915933:230754..230927 | Clytia hemisphaerica | exon |
| TCONS_00016959-exon-sc0000255-1575043694:230754..230927 | TCONS_00016959-exon-sc0000255-1575043694:230754..230927 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000255 | supercontig | sc0000255:229532..230927 + |
Blast
The following BLAST results are available for this feature:
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