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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016949 ID=TCONS_00016949|Name=TCONS_00016949|organism=Clytia hemisphaerica|type=transcript|length=361bp
CCAGTGTACAACGTGGATGCGAACGGCCACGGTCATTTTATAGCACTAAT
GTGGCCgacaacaaaatattttggtgtGGGAATATCTTATGATTACGATA
TCGAATGTACCTACACTGTAGCTCGTTTCGATGGTGTTCCAAACgaaaat
gatttttacaaaaGCAGCTACAGAATCCCGAAACCTAAAGAAAaggtGAC
TGTGACAGAGGCTTATTTGACACCGAAGAAGCAACCACCACCAGTCGTCT
ACTTTTTATACATCCCCAGTGAAGGCGGATGGACAGAATGGATTGACGTC
TCAACTTGTAGTACAACTTGTGGCAAGGGATTCAAAGTTCAACGCCGTTT
TTGCATCACTC Run BLAST on NCBI transcript from alignment at sc0000255:109413..112171+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016949 ID=TCONS_00016949|Name=TCONS_00016949|organism=Clytia hemisphaerica|type=transcript|length=2759bp|location=Sequence derived from alignment at sc0000255:109413..112171+ (Clytia hemisphaerica)
CCAGTGTACAACGTGGATGCGAACGGCCACGGTCATTTTATAGCACTAAT
GTGGCCgacaacaaaatattttggtgtGGGAATATCTTATGATTACGATA
TCGAATGTACCTACACTGTAGCTCGTTTCGATGGTGTTCCAAACgaaaat
gatttttacaaaaGCAGCTACAGAATCCCGAAACCTAAAGAAAGTAAGTT
CCAACCCAGCTTGGCACACAacgctgtttcaacgttcatctaacgttata
tggacgttgtgaacattagatgacgttgaaacaacgttttgcaCCAGCTG
GGAAACTACATTTTGCAATAAACACGAACAGAGTGCTAAAGACCCCCGGC
CCTAAAAATTACNGCTACATTTTGCAATAAACACGAACAGAGTGCTAAAG
ACCCGGCCctaaaaattactaaaaatacAAGTAACTTGGCTTACAAATAT
TGCCCTGAAACTAATTATGGACTGTGAAGGCAACCATAAGcacctaaaaa
aaaattttttgttatcCCGACATTAACATTATCAAAGTCGAGCGTAAAAA
GTCAATCTTGGTTAAATCCATCAGCGAAATTATAAAGTTTGATATCCTAA
TAATCCTGAAAATCCTTAGCAACTCCACCTCTGAAAATTGGagttgttta
taaaaaatatgtacagGCATAAATCTTCATATCCAGCGCTAAACTCGACA
AATTTTCATCGGCCATCCAaataaagttttatttcatactCTAACTTAAA
TTAACACAATGATCTCAGACTTgtcttaaaagaaaagaaaaattggaagc
tTAGCGAAAATTGGAAAGCTGAATAAATGATATACCGTTTAGTTGATCTC
TATATTTTAATTCATGTCAGCCATTTCGTCAGCCTTTGGTGATCTTTCAG
CTTACCAAGATCGAAAATATAatcagttttttattttaatctttcatctt
tttcatccTTAAATAAAATGACAGAGTTAAAAAAAGGCATCTGGAATTAG
GACAACAATACGGTAgttttctcttattttcacAAGGTTTTCCAACTTTC
CCTTTGTTAATGATATAATTAAATATCatctttaatttattttatttttc
agaggtGACTGTGACAGAGGCTTATTTGACACCGAAGAAGCAACCACCAC
CAGTCGTCTACTTTTTATACATCCCCAGTGAAGGCGGATGGACAGAATGG
ATTGACGTCTCAACTTGTAGTGTAAGTGGTAGCCAATAAGAATTTTAACA
ACGCTGATTAAAGGCCAGTGTAAAGACCAGTGtccggtatcggaattgca
attgtttcaattgttttaaaagtttgttttggacacgtgattttaattgt
tctctttaatgacacgtggtttgcgcaatgttatattttactacttttat
atccctttaacgttagatggacgttgaaataacgttagGTGTCAGCTAGG
CAACCAACTTCCTTTCTCTTTTGCAGACAACTTGTGGCAAGGGATTCAAA
GTTCAACGCCGTTTTTGCATCACTCCCGAATCTTTGAATGGGCATCCACC
AAATTGTGGTGCAGACAAAGAGAGAATGCAAATCATCATGTGCCAACGAC
AGGTTGTCTGTCCAGGGGATAACgatgaaagaaagaaagacgGTTAGTCA
CAACTTTTTAACCCTTTTAACGATTGCTATTTTCTTGCTAGGTTCTTGGA
ATTCCTTTTAATTTTAGTTCAGTTTAGCTTTCAAACTCGGAGCCTCAAAG
ATTCTGGTAGAAAGCAATATCAGTACTTTATCCATGGTAGATAATACGTt
gtcaaaaagtgagcaaaatataACGTCAAAGTTTCAGAATACCACTGAAA
ATTGCTGGGAAAATAGGTAACCCTTTCCCCCAGCAGACGACCTCCCAACG
ACTTTTCACCGTTCTTTTAACAACGGCACTAGGGGAAAGAGTGGGAGGGG
GAGTTCAAATCATACTCTTGTATCACCATTTAAGTTCAGGATTGTACCAC
AATACAATTATAATCACAGTTATAAATACCTCTAAGTTAATCTAAGTTAA
AACTACTTATATGTTGATTTGTCTTCTGTACGTAGCACATTCACTGTACC
CGGAAAAAACGGGGCATAATTTTATATGTGCTTAAGAATTCCATAtacaa
attgtttttttctagGAATTTGCGAGGACAAGACTCCTAATTTTTGCAAG
AGAAAAGTCACACCAGGCAATGGTCGNGATTAGGACAACAATACGGTAGT
TTCTCTCTTATTTTCACAAGGTTTTCCAACTTTCCCTTTGTTAATGATAT
AATTAAATATCatctttaatttattttatttttcagaggtGACTGTGACA
GAGGCTTATTTGACACCGAAGAAGCAACCACCACCAGTCGTCTACTTTTT
ATACATCCCCAGTGAAGGCGGATGGACAGAATGGATTGACGTCTCAACTT
GTAGTGTAAGTGGTAGCCAATAAGAATTTTAACAACGCTGATTAAAGGCC
AGTGTAAAGACCAGTGtccggtatcggaattgcaattgtttcaattgttt
taaaagtttgttttggacacgtgattttaattgttctctttaatgacacg
tggtttgcgcaatgttatattttactacttttatatccctttaacgttag
atggacgttgaaataacgttagGTGTCAGCTAGGCAACCAACTTCCTTTC
TCTTTTGCAGACAACTTGTGGCAAGGGATTCAAAGTTCAACGCCGTTTTT
GCATCACTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016949-exon-sc0000255-1491911889:109413..109605 | TCONS_00016949-exon-sc0000255-1491911889:109413..109605 | Clytia hemisphaerica | exon |
| TCONS_00016949-exon-sc0000255-1510915933:109413..109605 | TCONS_00016949-exon-sc0000255-1510915933:109413..109605 | Clytia hemisphaerica | exon |
| TCONS_00016949-exon-sc0000255-1575043694:109413..109605 | TCONS_00016949-exon-sc0000255-1575043694:109413..109605 | Clytia hemisphaerica | exon |
| TCONS_00016949-exon-sc0000255-1491911889:111749..111867 | TCONS_00016949-exon-sc0000255-1491911889:111749..111867 | Clytia hemisphaerica | exon |
| TCONS_00016949-exon-sc0000255-1510915933:111749..111867 | TCONS_00016949-exon-sc0000255-1510915933:111749..111867 | Clytia hemisphaerica | exon |
| TCONS_00016949-exon-sc0000255-1575043694:111749..111867 | TCONS_00016949-exon-sc0000255-1575043694:111749..111867 | Clytia hemisphaerica | exon |
| TCONS_00016949-exon-sc0000255-1491911889:112123..112171 | TCONS_00016949-exon-sc0000255-1491911889:112123..112171 | Clytia hemisphaerica | exon |
| TCONS_00016949-exon-sc0000255-1510915933:112123..112171 | TCONS_00016949-exon-sc0000255-1510915933:112123..112171 | Clytia hemisphaerica | exon |
| TCONS_00016949-exon-sc0000255-1575043694:112123..112171 | TCONS_00016949-exon-sc0000255-1575043694:112123..112171 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000255 | supercontig | sc0000255:109413..112171 + |
Blast
The following BLAST results are available for this feature:
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