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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016948 ID=TCONS_00016948|Name=TCONS_00016948|organism=Clytia hemisphaerica|type=transcript|length=345bp
GCGGGACAAAGACCATAGTGCCTGTATGTGTATGTGATGGAGGGATGAAC
AATGCGTATATCTCAGGTGACACAAATGTCGTTTCGACGCCCATCTAACG
TTCACGAGGTCCATTTGACGTATATTCAACGTTCAATTGAAGTCCACAGC
CATTGAATGGTTTTACCTGAAAGAAGAACATTTgaatttgttaaaaattg
acgtttttacTACTGGTATTAATAGAATTAACGTTCGACCGATACCATCT
GACGGATAAATGGCTCGTTAACGAAACTCAAATGAAACCATTGCTTGGTT
GTAAAAATCATCATCTACTGTAAATGAAACAAATAATGGACGGAT Run BLAST on NCBI transcript from alignment at sc0000255:106766..116441+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016948 ID=TCONS_00016948|Name=TCONS_00016948|organism=Clytia hemisphaerica|type=transcript|length=9676bp|location=Sequence derived from alignment at sc0000255:106766..116441+ (Clytia hemisphaerica)
GCGGGACAAAGACCATAGTGCCTGTATGTGTATGTGATGGAGGGATGAAC
AATGCGTATATCTCAGGTGACACAAATGTCGTTTCGACGCCCATCTAACG
TTCACGAGGTCCATTGACGTATATTCAACGTTCATTTGACGTCCAcagta
gtctagcaagctacacgtttttttttttataagaacgtcaaaaattttcg
aagccttcggatgttcttagttttttggatttgaagcctaaaaatgttct
taaaatgttcttaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNacattttgatgtaatttcttaagaaaatgcatgtttttaagtctcca
aagccttagaatgttcttagaatgttcttaaatttttgggcctcgaagcc
ttatgttcttatatagtttgttcttataaaaaaaagaacgtgtagacgac
taatttatacatatagtagaaataaagcaaaaagtaatgaatggaacaat
tttagtcgtctagaaacctttgtgcactaactccaaacaaaaaaaaaaga
gtcaattaatatcgcaattaaaattttttcctgctcaaaataattcttga
gaaaaaaaaatatgtgtggatttgtgtattgaaagtttttcatttgagtt
gatttcgttttgagagtttgttNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtccagtcg
tttatacaaactaaatcccgtattattattattattattattattattag
tattggtattattagtattacacgcattataaacgactccagtctacgtC
CACAGCCATTGAATGGTTTTACCTGAAAGAAGAACATTTGAATTTGTTAA
AGATTGACGTTTTTACTACTGGTATTAATAGAATTAACGTTCGACTAATA
CTATCTGATGGATAAATGGCTCGTTAACGAAACTCAAATGAAACCATTGC
TTGGTTGTAAAAATCATCATCTACTGTAAATGAAACAAATAATGGACGGA
TATTGCCTTGTTTACTTAAATAGGCAGCAACGCTCATTGCAGGACGGCAC
TACATAGACCAAGCACGGCATTGTAGAGTTAAATATATCCTTCATCAGAG
AAAGACAACAGTTATATTCCGTAATCCTTCTCCTGATTTAATTCATTAAT
CTGCAAATTTACCGTCAATCTTGTGCCGTCTCTCACATCGAAAGGAGGCA
AGGCAGAAAGTCGACTGTCTAAACTAGGTCTGTCTcccgctaattcgaac
tcgaacgggaatGTTATTCGTTCGAGTTACAAAGAGAAAATACTTTATAG
AAGGTACTAAATGGGGCTGGAAACaagatcgaattatagaaagattcgca
TAAAAGAAGCTCGAATAAGCGAATGTTTGTATATCAACTGTCAGTCATCC
CCGATTAGTGGCGCCACTTACTTTTAACATGTGAAATATTTCAttctgtt
tttttataagtGAACAATTCAAAGGTACCCATTACAACTACGATAAACCA
GTGTACAACGTGGATGCGAACGGCCACGGTCATTTTATAGCACTAATGTG
GCCgacaacaaaatattttggtgtGGGAATATCTTATGATTACGATATCG
AATGTACCTACACTGTAGCTCGTTTCGATGGTGTTCCAAACgaaaatgat
ttttacaaaaGCAGCTACAGAATCCCGAAACCTAAAGAAAGTAAGTTCCA
ACCCAGCTTGGCACACAacgctgtttcaacgttcatctaacgttatatgg
acgttgtgaacattagatgacgttgaaacaacgttttgcaCCAGCTGGGA
AACTACATTTTGCAATAAACACGAACAGAGTGCTAAAGACCCCCGGCCCT
AAAAATTACNGCTACATTTTGCAATAAACACGAACAGAGTGCTAAAGACC
CGGCCctaaaaattactaaaaatacAAGTAACTTGGCTTACAAATATTGC
CCTGAAACTAATTATGGACTGTGAAGGCAACCATAAGcacctaaaaaaaa
attttttgttatcCCGACATTAACATTATCAAAGTCGAGCGTAAAAAGTC
AATCTTGGTTAAATCCATCAGCGAAATTATAAAGTTTGATATCCTAATAA
TCCTGAAAATCCTTAGCAACTCCACCTCTGAAAATTGGagttgtttataa
aaaatatgtacagGCATAAATCTTCATATCCAGCGCTAAACTCGACAAAT
TTTCATCGGCCATCCAaataaagttttatttcatactCTAACTTAAATTA
ACACAATGATCTCAGACTTgtcttaaaagaaaagaaaaattggaagctTA
GCGAAAATTGGAAAGCTGAATAAATGATATACCGTTTAGTTGATCTCTAT
ATTTTAATTCATGTCAGCCATTTCGTCAGCCTTTGGTGATCTTTCAGCTT
ACCAAGATCGAAAATATAatcagttttttattttaatctttcatcttttt
catccTTAAATAAAATGACAGAGTTAAAAAAAGGCATCTGGAATTAGGAC
AACAATACGGTAgttttctcttattttcacAAGGTTTTCCAACTTTCCCT
TTGTTAATGATATAATTAAATATCatctttaatttattttatttttcaga
ggtGACTGTGACAGAGGCTTATTTGACACCGAAGAAGCAACCACCACCAG
TCGTCTACTTTTTATACATCCCCAGTGAAGGCGGATGGACAGAATGGATT
GACGTCTCAACTTGTAGTGTAAGTGGTAGCCAATAAGAATTTTAACAACG
CTGATTAAAGGCCAGTGTAAAGACCAGTGtccggtatcggaattgcaatt
gtttcaattgttttaaaagtttgttttggacacgtgattttaattgttct
ctttaatgacacgtggtttgcgcaatgttatattttactacttttatatc
cctttaacgttagatggacgttgaaataacgttagGTGTCAGCTAGGCAA
CCAACTTCCTTTCTCTTTTGCAGACAACTTGTGGCAAGGGATTCAAAGTT
CAACGCCGTTTTTGCATCACTCCCGAATCTTTGAATGGGCATCCACCAAA
TTGTGGTGCAGACAAAGAGAGAATGCAAATCATCATGTGCCAACGACAGG
TTGTCTGTCCAGGGGATAACgatgaaagaaagaaagacgGTTAGTCACAA
CTTTTTAACCCTTTTAACGATTGCTATTTTCTTGCTAGGTTCTTGGAATT
CCTTTTAATTTTAGTTCAGTTTAGCTTTCAAACTCGGAGCCTCAAAGATT
CTGGTAGAAAGCAATATCAGTACTTTATCCATGGTAGATAATACGTtgtc
aaaaagtgagcaaaatataACGTCAAAGTTTCAGAATACCACTGAAAATT
GCTGGGAAAATAGGTAACCCTTTCCCCCAGCAGACGACCTCCCAACGACT
TTTCACCGTTCTTTTAACAACGGCACTAGGGGAAAGAGTGGGAGGGGGAG
TTCAAATCATACTCTTGTATCACCATTTAAGTTCAGGATTGTACCACAAT
ACAATTATAATCACAGTTATAAATACCTCTAAGTTAATCTAAGTTAAAAC
TACTTATATGTTGATTTGTCTTCTGTACGTAGCACATTCACTGTACCCGG
AAAAAACGGGGCATAATTTTATATGTGCTTAAGAATTCCATAtacaaatt
gtttttttctagGAATTTGCGAGGACAAGACTCCTAATTTTTGCAAGAGA
AAAGTCACACCAGGCAATGGTCGNGATTAGGACAACAATACGGTAGTTTC
TCTCTTATTTTCACAAGGTTTTCCAACTTTCCCTTTGTTAATGATATAAT
TAAATATCatctttaatttattttatttttcagaggtGACTGTGACAGAG
GCTTATTTGACACCGAAGAAGCAACCACCACCAGTCGTCTACTTTTTATA
CATCCCCAGTGAAGGCGGATGGACAGAATGGATTGACGTCTCAACTTGTA
GTGTAAGTGGTAGCCAATAAGAATTTTAACAACGCTGATTAAAGGCCAGT
GTAAAGACCAGTGtccggtatcggaattgcaattgtttcaattgttttaa
aagtttgttttggacacgtgattttaattgttctctttaatgacacgtgg
tttgcgcaatgttatattttactacttttatatccctttaacgttagatg
gacgttgaaataacgttagGTGTCAGCTAGGCAACCAACTTCCTTTCTCT
TTTGCAGACAACTTGTGGCAAGGGATTCAAAGTTCAACGCCGTTTTTGCA
TCACTCCCGAATCTTTGAATGGGCATCCACCAAATTGTGGTGCAGACAAA
GAGAGAATGCAAATCATCATGTGCGAACGACAGGTTGTCTGTCCAGGGGA
TAACgatgaaagaaagaaagacgGTTAGTCACAACTTTTTAACCCTTTTA
ACGATTGCTATTTTCTTGCTAGGTTCTTGGAATTCCTTTTAATTTTAGTT
CAGTTTAGCTTTCAAACTCGGAGCCTCAAAGATTCTGGTAGAAAGCAATA
TCAGTACTTTATCCATGGTAGATAATACGTtgtcaaaaagtgagcaaaat
ataACGTCAAAGTTTCAGAATACCACTGAAAATTGCTGGGAAAATAGGTA
ACCCTTTCCCCCAGCAGACGACCTCCCAACGACTTTTCACCGTTCTTTTA
ACAACGGCACTAGGGGAAAGAGTGGGAGGGGGAGTTCAAATCATACTCTT
GTATCACCATTTAAGTTCAGGATTGTACCACAATACAATTATAATCACAG
TTATAAATACCTCTAAGTTAATCTAAGTTAAAACTACTTATATGTTGATT
TGTCTTCTGTACGTAGCACATTCACTGTACCCGGAAAAAACGGGGCATAA
TTTTATATGTGCTTAAGAATTCCATAtacaaattgtttttttctagGAAT
TTGCGAGGACAAGACTCCTAATTTTTGCAAGAGAAAAGTCACACCAGGCA
ATGGTCGTAAAGAATGCCGACAAAAAGATACGAAAGAACAAATGACACGT
GATTGCAAGAAGACATGCCGTTTTTGCGAGCGTgagtctgtctgtctgtc
tgtctgtctgtctgtctgtctgtctgtctgcgCTTTTGTAATATCACACC
ATAACACAACCAAAACTGCAACATTGTctccgtgtattccaggctttatc
tacgttactgattgacgccagagaatactaTCTAGCGCTATCACTAAGCA
TTGAAAATGCTGGTAATACACACGGAACGAGGTTGCCaaaactgtttaac
aatttCTATCCGTTTATGACATGTCCCGAGGATTGAGAATCTGTCGGTAT
AATATCAAATAGCAATTGTGAATCGACACAAAAAGCGTTCAAAGGGTGCA
AGAATTGTCTTCAAATTTGAGAAACATCCAAATCATGGATATGGACTATG
GATATCGTGCATTCTTTCTTTGCGCATCATATTTAACTAGATCTAGAGcg
ataaattttactttcaatacaGCGTTTGTCTGAAAGCCACGTCGGTCACA
CTTCATTTCCTATCCAATAATTTCTCTCTAGCCATCTGCcttaaactgat
tttttttattttcagcttGTATGAATTACCACAGAGATTGTCCAGGTTAC
GCGTCCGTCAGTTATGGTTATTGCACTGATGATAAGTACAGTGCTTGGAT
GGAATGGAAATGTGCTAGATCATGTGGTTATTGTAACAAAAGTGAGTTAA
AAAACACCCCAGTGTCACAGCATCCGGTCGTACTCACACCCCACTACAAA
TTTTGCCCTCGTagttggttgattttttttagatttcgatagaacttttt
tgggaaaaaggGATAAACTATTAGGCTTGACGAGCTTATGTAACTTAGCA
AAACTAAATATACAATCAtgatcgaaatatattgagaattccggttattt
taacgttttcaagatttaaagtttcGGCGAAAAAGTCgtttttgggctat
ctctttaatctaatcaaatatttcaatttgggatgggttggcagacttac
aggctatattctcagccttattggactttttttgaatttttggatcctaa
gtcttaagtctagctttaaaactctacccttcgaacctactttagagcac
ttacaaatcgattgtgttttcaaaacttcctggggaatttcccttttttc
ttaaATATTATGACCTNtttttttgaatttttggatcctaagtcttaagt
ctagctttaaaactctacccttcgaacctactttagagcacttacaaatc
gattgtgttttcaaaacttcctggggaatttcccttttttctcaaatatt
atgaccttgattgtaccaTCATggaaaaaacattcgattatgACGAGACG
ATTCCTGATGCAAACTGAATGTTTTCTTTCATATTTGGCGAGAATTATAA
GTAACTTTGGGACAAACTTACCTACGAAAATAAGGAGTAATAAATTTCTG
AGccttaaagcgattttaagaaaGTAAGAAACAAGGCATAGTGACTCAAG
AGAATGATTTCATCAAAGTGAGCAGATATCATGTAATGTTAAgattttta
tttgaataaatAAGCCCAGCGGTACTTAAACTTGAAGAAAAAGACGCAGT
CATAAATTCAAAGGTCCCTTCTAACAGTATAAAATTTCAGTCTTTTAAAA
AAGCTTTCCCGATTATAGATCAAACGAAACCGATGGGCGACGACTGTTAC
GATCTTTCCGACAAATGTCCCGATTATGCCGATCATTTTGATGACGATTA
TTGCAATCATCCGAAATACGCCAAGTGGATGTCGCAAGCATGCAAAGAAA
GTTGCTTATATTGCAAAGGTAAAACACTTATTAAGTCTTTGAAAAAGCCA
CGTACTACAGACCCAGTGAGACCCCCTGCCCGTccgaaaaatatataaaa
aaatcgtCCTTTAGTAAAGAATATAACCTGAAGTTTTATCACGTACCAGT
CCCAAAAGAAATACTGGTCAAGTCCTTTCTTaggggaactaattttgacg
aacagcaaaaatcctaaaaagttgtaaatttatcaaggaacttattttgg
tgaggtagtatgttttttaaattcaaatttgccaaagttagttctcgcca
aaaatAAGTTCCCTCTTGAGATAATCAAAAGTAGCATTCTATCACTGACC
ACCTTTAGAGAAAGATAGATTAACTTAGATATCAAAGGACTGACAGCTGC
AAGTAGGAATTCAAGTTATCTgggaaatttctagcatctaatggtatttt
tgtcacGATCCTATGTCCAATATATTTTTGTGGGAAAATTTACCTGGTAG
ATTGTTTACTTATTAGATTGTACTGNTGTCACGATCCTCAGTCCAATATA
CCTTTTTGTGGGAAAATTCACCTGGTAGATTGTTTACTTATTAGATTGTA
CTGACAAAAGTCCTTATTGCGAGACGTTAAAAAAGAACGGCTTGTGCGTC
GCAAAGAATCGACAAGTCTATTCCTGGATGGTAATGGAATGCTCCAAATC
GTGTGGTTATTGTTTCGAAAAATCTGTTTTCCAAAAAGACATTACAAAGT
CAGTAACTACCTTTTATATTCAAAAGTTTCCTCACATTTTAAAGGctaca
actttttttataaggcaTAAGGTAAATTTTTGTGAGGACTCATTTTgcaa
gaaaatacattttttgagCCTCGAATAAGCTTAAATGTTATGCCTATGAT
GTGATAATGTACTTAACATTTTAAGCATGCTTTTTTTTGTACTTCAgata
attaaaaatattttgaaatttcgtaAAATGAAGGACAGCATACATATGCT
TAGGCAatgcttaatttttttttaagatttgagcctggatatgcttataa
gagtTATGGCTATCAATAAAAAGTGTAAAGTGTGTATTATCAACTTCAAT
ACTTATTTCACCCGACCAAATTTTACCACAACTTTTTTCTACTTCTTTTA
ACGGTTATTTCAAAACATTAATCTAGTGCACTGTAACGTACAAATTCCCA
ATTATAGATACGATTTCTCAATATGaagtaaaaatccaaaaaaatttaaa
tttcttttttggcaATGTCTATAGTTGATAAAGAATTTACTGATTGCCCG
AGTTaggaaaataaaattcttaCTGTTAATATATGCTGatattttaaatc
tttaatttgCATGCGGTATTTTTTTAGAGTGACGGGACAAAGACCATAGT
GCCTGTATGTGTATGCAATGGAGGGATGAACGATGCGTATATCTCCGGTG
ACACAAATGTCGTTTCGACGCCCATCTAACGTTCACGAGGTCCATTTGAC
GTATATTCAACGTTCAATTGAAGTCCACAGCCATTGAATGGTTTTACCTG
AAAGAAGAACATTTgaatttgttaaaaattgacgtttttacTACTGGTAT
TAATAGAATTAACGTTCGACCGATACCATCTGACGGATAAATGGCTCGTT
AACGAAACTCAAATGAAACCATTGCTTGGTTGTAAAAATCATCATCTACT
GTAAATGAAACAAATAATGGACGGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016948-exon-sc0000255-1491911889:106766..106873 | TCONS_00016948-exon-sc0000255-1491911889:106766..106873 | Clytia hemisphaerica | exon |
| TCONS_00016948-exon-sc0000255-1510915933:106766..106873 | TCONS_00016948-exon-sc0000255-1510915933:106766..106873 | Clytia hemisphaerica | exon |
| TCONS_00016948-exon-sc0000255-1575043694:106766..106873 | TCONS_00016948-exon-sc0000255-1575043694:106766..106873 | Clytia hemisphaerica | exon |
| TCONS_00016948-exon-sc0000255-1491911889:116205..116441 | TCONS_00016948-exon-sc0000255-1491911889:116205..116441 | Clytia hemisphaerica | exon |
| TCONS_00016948-exon-sc0000255-1510915933:116205..116441 | TCONS_00016948-exon-sc0000255-1510915933:116205..116441 | Clytia hemisphaerica | exon |
| TCONS_00016948-exon-sc0000255-1575043694:116205..116441 | TCONS_00016948-exon-sc0000255-1575043694:116205..116441 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000255 | supercontig | sc0000255:106766..116441 + |
Blast
The following BLAST results are available for this feature:
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