TCONS_00016939 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016939
Unique NameTCONS_00016939
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length471

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016939 ID=TCONS_00016939|Name=TCONS_00016939|organism=Clytia hemisphaerica|type=transcript|length=471bp
GCGCCACTTATGAATTATCTCCTCGATAAAGGATACAGTGTACGAATGCT
TGCACGGACACCAGAGAAAGTCGAACAAAAAGACAACCCAGAAGTGACTG
TCATCAAAGGCGATGCTTTGAATGAAGAGGACATTGCTCAAGTTTGTCAA
GATGTTGACATCCTCATCTCATGTGCTGGTGGAGGTCCTGGTGTGCGTAT
CATGGAAAAACTGGCATCTAATGTCGTCAAAGCAAAGCCAAAACGTTGTT
ATTTCATCACCTCATTAGGAATGGGTGGTAGCTCCACTGCTGTTAACTTA
TTGCTTAGTTTGGTGGTTGGTCGAAAGAACATCGTTGACTGTGACAAAGC
AGATTCTCTTATCTTGGAGAATGGTTACACAGTTGTTCGTCCTTGTGAAT
TGAAAGGCGATCCTTTGGGTGATTATTACGCTACTTCCAAGACCGGAATG
TCTATCAAAGCCATTTCCANN
Run BLAST on NCBI

protein sequence of TCONS_00016939-protein

>TCONS_00016939-protein ID=TCONS_00016939-protein|Name=TCONS_00016939-protein|organism=Clytia hemisphaerica|type=polypeptide|length=157bp
APLMNYLLDKGYSVRMLARTPEKVEQKDNPEVTVIKGDALNEEDIAQVCQ
DVDILISCAGGGPGVRIMEKLASNVVKAKPKRCYFITSLGMGGSSTAVNL
LLSLVVGRKNIVDCDKADSLILENGYTVVRPCELKGDPLGDYYATSKTGM
SIKAISX
Run BLAST on NCBI

transcript from alignment at sc0000254:395582..396052

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016939 ID=TCONS_00016939|Name=TCONS_00016939|organism=Clytia hemisphaerica|type=transcript|length=471bp|location=Sequence derived from alignment at sc0000254:395582..396052 (Clytia hemisphaerica)
NNTGGAAATGGCTTTGATAGACATTCCGGTCTTGGAAGTAGCGTAATAAT
CACCCAAAGGATCGCCTTTCAATTCACAAGGACGAACAACTGTGTAACCA
TTCTCCAAGATAAGAGAATCTGCTTTGTCACAGTCAACGATGTTCTTTCG
ACCAACCACCAAACTAAGCAATAAGTTAACAGCAGTGGAGCTACCACCCA
TTCCTAATGAGGTGATGAAATAACAACGTTTTGGCTTTGCTTTGACGACA
TTAGATGCCAGTTTTTCCATGATACGCACACCAGGACCTCCACCAGCACA
TGAGATGAGGATGTCAACATCTTGACAAACTTGAGCAATGTCCTCTTCAT
TCAAAGCATCGCCTTTGATGACAGTCACTTCTGGGTTGTCTTTTTGTTCG
ACTTTCTCTGGTGTCCGTGCAAGCATTCGTACACTGTATCCTTTATCGAG
GAGATAATTCATAAGTGGCGC

Coding sequence (CDS) from alignment at sc0000254:395582..396052

>TCONS_00016939 ID=TCONS_00016939|Name=TCONS_00016939|organism=Clytia hemisphaerica|type=CDS|length=471bp|location=Sequence derived from alignment at sc0000254:395582..396052 (Clytia hemisphaerica)
NNTGGAAATGGCTTTGATAGACATTCCGGTCTTGGAAGTAGCGTAATAAT
CACCCAAAGGATCGCCTTTCAATTCACAAGGACGAACAACTGTGTAACCA
TTCTCCAAGATAAGAGAATCTGCTTTGTCACAGTCAACGATGTTCTTTCG
ACCAACCACCAAACTAAGCAATAAGTTAACAGCAGTGGAGCTACCACCCA
TTCCTAATGAGGTGATGAAATAACAACGTTTTGGCTTTGCTTTGACGACA
TTAGATGCCAGTTTTTCCATGATACGCACACCAGGACCTCCACCAGCACA
TGAGATGAGGATGTCAACATCTTGACAAACTTGAGCAATGTCCTCTTCAT
TCAAAGCATCGCCTTTGATGACAGTCACTTCTGGGTTGTCTTTTTGTTCG
ACTTTCTCTGGTGTCCGTGCAAGCATTCGTACACTGTATCCTTTATCGAG
GAGATAATTCATAAGTGGCGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009490XLOC_009490Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016939-exon-sc0000254-1491911889:395582..396052TCONS_00016939-exon-sc0000254-1491911889:395582..396052Clytia hemisphaericaexon
TCONS_00016939-exon-sc0000254-1510915933:395582..396052TCONS_00016939-exon-sc0000254-1510915933:395582..396052Clytia hemisphaericaexon
TCONS_00016939-exon-sc0000254-1575043694:395582..396052TCONS_00016939-exon-sc0000254-1575043694:395582..396052Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016939-proteinTCONS_00016939-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000254supercontigsc0000254:395582..396052 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.0516	7.80361	2.76097	3.65244	0.402307	0	0.206529	0.558768	2.51396	1.59041	0	1.30973	8.54476	5.85132	6.73391	5.54118	7.30821	6.60337	19.3626	16.0108	13.6119	12.3219	7.59495	12.2052	3.35975	0.82402	60.3991	52.0094	5.8369	4.176
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR016040NAD(P)-bd_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016939 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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