TCONS_00016933 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016933
Unique NameTCONS_00016933
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1411

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016933 ID=TCONS_00016933|Name=TCONS_00016933|organism=Clytia hemisphaerica|type=transcript|length=1411bp
gattttttaaaagcaaaaaaaaaacaataatggAATCGTTTGTTATTCGT
GATGCTGTTTCGAATGATTGTGATGACATCATGAAATTGATCGTCAATTT
AGCTGTCTTTGAAAATGAGCCTGAATCACgtgtcaaaataacaaaagaag
aaTTGATACGTGATGGTTTCAGTGAAAATGGTGAAAAGAAATGGTTTCGT
TGTCTTATTGGTGAGGTCATCAGCACTGGTGAATCAGGGCAAGAAATCAC
AACAATGATCGGTTATGCTTTATTCTTCCCAACCTACTCAACCTGGAATG
GACGTACAATCAAAATCGAAGACCTGTATATTGAACCTGCATTCCGGGGT
AAAGGATACGGGACACAAATGTTAAAGCGTGTTAATGAGATAGCTTTAAG
TGAAGGGTGTTCTCGAGTTCATTGGAATGTCTTGGATTGGAATAAAAACG
CTATTGAATTCTATAAACGCCTTGGGGCGGAATATTCAGAAGAGTGGCGG
GTATGCACCCTTCACCACCCTGAAATGGTTGGGTTGTCCAAAAAATGAAC
CAGGCAGTAGTTGTATATTATAACTATAAAACGGCTGCTGTGTAGCCgta
aatgaaagtgaaaatgtgATCATTTCTATAGATCCGGGACcagagatttt
ggtaacgtgatcaaaaagtgtGCAAATCGTAACAtgtcttttgtttttaa
caaaagaaaattgaacaaaaactgagctaaaacaatacattgccagacag
GGTTTTTTATGATGACTATGGACAGACTTACGTATCTGTACATAATTTTA
CATATTACAGAGTAGTTTGCAAAGTGTATTTCTAGGTAAAAGATTTCTCT
AATCTAAAGACAAAAATGGTTTAcgatagacgatatcggcttaaccgaat
tctccccgaatgattacccatgatgcattgcgcaaagaaattcacggaca
ataaccctaaccctaacaatgcatcatgggtaatcattcggggagaattc
ggaaagccgatatcgtctattttaCAAGTTTACGAATTTTCCCTGTCAAG
AATAGTATTGTTGATTCATCGCATTTTCAATATGAGAGTTCACTTCGTCA
TTTTCTAGCCTCATTCTACGGTAATATGCATCTCTAGCCTCGTTGCTATG
TACCTCGACACCATCATTGTAACCAATATCTCCGTTTCCATAGTAACCAC
TACTTTTGTCATAGTAACCAGCGCTGCTGTCAATGAGCTCATTTTGGTTA
TATAAAGATGCGCCATTTTGGTATAATTTAGTTTCCATGGAATCGTCCAC
TTCAATTCTGTTCATGAAGTTTGACCaatcatgttttttatttaaagaaa
atCCAGGCGGGATTTGAGCTCTGATTCGCCGGAACGGTGAGTGTGCCTTC
ATGTATTTGAT
Run BLAST on NCBI

protein sequence of TCONS_00016933-protein

>TCONS_00016933-protein ID=TCONS_00016933-protein|Name=TCONS_00016933-protein|organism=Clytia hemisphaerica|type=polypeptide|length=181bp
FFKSKKKTIMESFVIRDAVSNDCDDIMKLIVNLAVFENEPESRVKITKEE
LIRDGFSENGEKKWFRCLIGEVISTGESGQEITTMIGYALFFPTYSTWNG
RTIKIEDLYIEPAFRGKGYGTQMLKRVNEIALSEGCSRVHWNVLDWNKNA
IEFYKRLGAEYSEEWRVCTLHHPEMVGLSKK
Run BLAST on NCBI

transcript from alignment at sc0000254:318839..321042-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016933 ID=TCONS_00016933|Name=TCONS_00016933|organism=Clytia hemisphaerica|type=transcript|length=2204bp|location=Sequence derived from alignment at sc0000254:318839..321042- (Clytia hemisphaerica)
GATTTTTTAAAAGCAAAAAAAAAACAATAATGGAATCGTTTGTTATTCGT
GATGCTGTTTCGAATGATTGTGATGACATCATGAAATTGATCGTCAATTT
AGCTGTCTTTGAAAATGAGCCTGAATCACGTGTCAAAATAACAAAAGAAG
AATTGATACGTGATGGTTTCAGTGAAAATGGTGAAAAGAAATGGTTTCGT
TGTCTTATTGGTGAGGTCATCAGCACTGGTGAATCAGGTACCGTTGCATG
TTTTTTTTCTTAAAAGCAAGCCTGTCCCTTTATCAGGCTCGTATTTTGCT
TAGCATTCTAATGTTCTCAAACAATAGAGCCATTGTTTAGGTACCAAAAA
TTGAGGCTGTATATGCTTATAAACCTTATGCTTATAAAATAAAAAACATA
CTTCGAATAAATGCCCCCTTCTTTTAAACGCTACCCTCGAATAACGCGCC
ACTCCTTTGCGGAAAAATCTTCGATGAACGCCATCTTAGAATAAACGCCT
CCCTTCTAGAAGGGCTTTTATTTGAACCAGGCAGGTTGAGAAGAATATTA
TGAAGGAAAACAATAATTTTTTTTATTGTAGATAGATATATCTTAGTCCG
GGAGCTGAGGGAGGTCAACTATGACTGTCGGAGTGCCACGTTAAATCTTT
TAGCACGTTGTCTGAATTTTCCGAATTTCCATGTTGACTGTGCGAAAATC
TTTGTATTCTGGTCCGTAAAATCTTTGTATTCTGGTCCGTAAAATCTTTG
TATTCTGGTCCGTAAAATAAACAACTGCAAGAAAATTTAGGACAGTCAAC
AAGTAAATTCTAATGTCTGGGTGGTCAACTGATGCTTGTCCATGGGGGTC
AGACCTGCTGTCCGGGGGGACAAAATTGACAATATCCGGGGGGCGGGTAA
ATTTCTAAAAAATGCTATGTGCTACAACCCCGCATATTTAATTTTTTTCT
GGAAAAGCCCATTTTGGTAATTTGTTGTCTTTTTGCTCTTTTACATGAGC
TCTCTCTGACTTTGTTCCTATTCAATTCAGGGCAAGAAATCACAACAATG
ATCGGTTATGCTTTATTCTTCCCAACCTACTCAACCTGGAATGGACGTAC
AATCAAAATCGAAGACCTGTATATTGAACCTGCATTCCGGGGTAAAGGAT
ACGGGACACAAATGTTAAAGCGTGTTAATGAGATAGCTTTAAGTGAAGGG
TGTTCTCGAGTTCATTGGAATGTCTTGGATTGGAATAAAAACGCTATTGA
ATTCTATAAACGCCTTGGGGCGGAATATTCAGAAGAGTGGCGGGTATGCA
CCCTTCACCACCCTGAAATGGTTGGGTTGTCCAAAAAATGAACCAGGCAG
TAGTTGTATATTATAACTATAAAACGGCTGCTGTGTAGCCGTAAATGAAA
GTGAAAATGTGATCATTTCTATAGATCCGGGACCAGAGATTTTGGTAACG
TGATCAAAAAGTGTGCAAATCGTAACATGTCTTTTGTTTTTAACAAAAGA
AAATTGAACAAAAACTGAGCTAAAACAATACATTGCCAGACAGGGTTTTT
TATGATGACTATGGACAGACTTACGTATCTGTACATAATTTTACATATTA
CAGAGTAGTTTGCAAAGTGTATTTCTAGGTAAAAGATTTCTCTAATCTAA
AGACAAAAATGGTTTACGATAGACGATATCGGCTTAACCGAATTCTCCCC
GAATGATTACCCATGATGCATTGCGCAAAGAAATTCACGGACAATAACCC
TAACCCTAACAATGCATCATGGGTAATCATTCGGGGAGAATTCGGAAAGC
CGATATCGTCTATTTTACAAGTTTACGAATTTTCCCTGTCAAGAATAGTA
TTGTTGATTCATCGCATTTTCAATATGAGAGTTCACTTCGTCATTTTCTA
GCCTCATTCTACGGTAATATGCATCTCTAGCCTCGTTGCTATGTACCTCG
ACACCATCATTGTAACCAATATCTCCGTTTCCATAGTAACCACTACTTTT
GTCATAGTAACCAGCGCTGCTGTCAATGAGCTCATTTTGGTTATATAAAG
ATGCGCCATTTTGGTATAATTTAGTTTCCATGGAATCGTCCACTTCAATT
CTGTTCATGAAGTTTGACCAATCATGTTTTTTATTTAAAGAAAATCCAGG
CGGGATTTGAGCTCTGATTCGCCGGAACGGTGAGTGTGCCTTCATGTATT
TGAT

Coding sequence (CDS) from alignment at sc0000254:318839..321042-

>TCONS_00016933 ID=TCONS_00016933|Name=TCONS_00016933|organism=Clytia hemisphaerica|type=CDS|length=1092bp|location=Sequence derived from alignment at sc0000254:318839..321042- (Clytia hemisphaerica)
GGCAAGAAATCACAACAATGATCGGTTATGCTTTATTCTTCCCAACCTAC
TCAACCTGGAATGGACGTACAATCAAAATCGAAGACCTGTATATTGAACC
TGCATTCCGGGGTAAAGGATACGGGACACAAATGTTAAAGCGTGTTAATG
AGATAGCTTTAAGTGAAGGGTGTTCTCGAGTTCATTGGAATGTCTTGGAT
TGGAATAAAAACGCTATTGAATTCTATAAACGCCTTGGGGCGGAATATTC
AGAAGAGTGGCGGGTATGCACCCTTCACCACCCTGAAATGGTTGGGTTGT
CCAAAAAATGATTTTTTAAAAGCAAAAAAAAAACAATAATGGAATCGTTT
GTTATTCGTGATGCTGTTTCGAATGATTGTGATGACATCATGAAATTGAT
CGTCAATTTAGCTGTCTTTGAAAATGAGCCTGAATCACGTGTCAAAATAA
CAAAAGAAGAATTGATACGTGATGGTTTCAGTGAAAATGGTGAAAAGAAA
TGGTTTCGTTGTCTTATTGGTGAGGTCATCAGCACTGGTGAATCAGGGCA
AGAAATCACAACAATGATCGGTTATGCTTTATTCTTCCCAACCTACTCAA
CCTGGAATGGACGTACAATCAAAATCGAAGACCTGTATATTGAACCTGCA
TTCCGGGGTAAAGGATACGGGACACAAATGTTAAAGCGTGTTAATGAGAT
AGCTTTAAGTGAAGGGTGTTCTCGAGTTCATTGGAATGTCTTGGATTGGA
ATAAAAACGCTATTGAATTCTATAAACGCCTTGGGGCGGAATATTCAGAA
GAGTGGCGGGTATGCACCCTTCACCACCCTGAAATGGTTGGGTTGTCCAA
AAAATGATTTTTTAAAAGCAAAAAAAAAACAATAATGGAATCGTTTGTTA
TTCGTGATGCTGTTTCGAATGATTGTGATGACATCATGAAATTGATCGTC
AATTTAGCTGTCTTTGAAAATGAGCCTGAATCACGTGTCAAAATAACAAA
AGAAGAATTGATACGTGATGGTTTCAGTGAAAATGGTGAAAAGAAATGGT
TTCGTTGTCTTATTGGTGAGGTCATCAGCACTGGTGAATCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009484XLOC_009484Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016933-proteinTCONS_00016933-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016933-exon-sc0000254-1575043694:320806..321042TCONS_00016933-exon-sc0000254-1575043694:320806..321042Clytia hemisphaericaexon
TCONS_00016933-exon-sc0000254-1575043694:318839..320012TCONS_00016933-exon-sc0000254-1575043694:318839..320012Clytia hemisphaericaexon
TCONS_00016933-exon-sc0000254-1510915933:320806..321042TCONS_00016933-exon-sc0000254-1510915933:320806..321042Clytia hemisphaericaexon
TCONS_00016933-exon-sc0000254-1510915933:318839..320012TCONS_00016933-exon-sc0000254-1510915933:318839..320012Clytia hemisphaericaexon
TCONS_00016933-exon-sc0000254-1491911889:320806..321042TCONS_00016933-exon-sc0000254-1491911889:320806..321042Clytia hemisphaericaexon
TCONS_00016933-exon-sc0000254-1491911889:318839..320012TCONS_00016933-exon-sc0000254-1491911889:318839..320012Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000254supercontigsc0000254:318839..321042 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.64083	4.31147	5.33506	5.20341	3.04792	2.50012	3.93022	4.65765	5.65249	4.52152	2.34329	3.57297	1.92981	1.23924	2.9571	3.54178	4.40587	5.27106	1.28992	1.4546	4.17692	4.05681	3.02764	2.43756	3.8495	4.12302	1.93577	1.40641	1.47935	0.910537
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000182GNAT_dom
IPR016181Acyl_CoA_acyltransferase
Vocabulary: Molecular Function
TermDefinition
GO:0008080N-acetyltransferase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0008080 N-acetyltransferase activity
Blast
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BLAST of TCONS_00016933 vs. Swiss-Prot (Human)
Match: SAT2 (Diamine acetyltransferase 2 OS=Homo sapiens GN=SAT2 PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 4.810e-36
Identity = 65/152 (42.76%), Postives = 102/152 (67.11%), Query Frame = 3 
Query:   30 MESFVIRDAVSNDCDDIMKLIVNLAVFENEPESRVKITKEELIRDGFSENGEKKWFRCLIGEVISTGESGQEI-TTMIGYALFFPTYSTWNGRTIKIEDLYIEPAFRGKGYGTQMLKRVNEIALSEGCSRVHWNVLDWNKNAIEFYKRLGAE 482
            M S  IR+A   DC DI++LI  LA FE   + +VKI++E L  DGF +N    ++ CL+ E++     G+ +   ++GY +++  YSTW GRTI +ED+Y+ P +RG+G G++++K+V E+AL +GCS+    VLDWN+ A++ YK LGA+
Sbjct:    1 MASVRIREAKEGDCGDILRLIRELAEFEKLSD-QVKISEEALRADGFGDN---PFYHCLVAEILPA--PGKLLGPCVVGYGIYYFIYSTWKGRTIYLEDIYVMPEYRGQGIGSKIIKKVAEVALDKGCSQFRLAVLDWNQRAMDLYKALGAQ 146
The following BLAST results are available for this feature:
BLAST of TCONS_00016933 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SAT24.810e-3642.76Diamine acetyltransferase 2 OS=Homo sapiens GN=SAT... [more]
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