TCONS_00016932 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016932
Unique NameTCONS_00016932
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1930

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016932 ID=TCONS_00016932|Name=TCONS_00016932|organism=Clytia hemisphaerica|type=transcript|length=1930bp
gccattttttgccTTACAAAAAAGTGCGCAGACGGGAAGATATAAAATAA
GCAAGAAAATAACAATTAACAGATTTTTCCCCTAATTACCTGCAATAACA
AAAGATCAATATTAGCAACAATCCAGTCAAAATgataacattttaaaaat
ataacCTAACCTAAGTCTAAATCAAATATGAAAACACCATTGAGAACACG
AATCTTTGGACcttctcaaaatatttctttctccAACACTTTAAAATCCC
ATTCAAGGTTGAAAATTGTAAGGTCGTTAGCcaaaatacagggtgtccgg
aaaaaaagtatcgagctcgaacatgattctgagtagaaggttgttgtgTG
TGTTgcatgacgttaaagttattgagaattgttttttgtaaaagttattc
atagaAGATGACAATTAACatgacacagagagaaactttaataaacattg
caaatttagtgaaacacacacagaactttctttctatagaagtggtacga
ctcgatacttttttccggACATCCTGTACAAATGATAGAAAATTCTGTAT
CACTTTTTTTGGTCTTTCTCAGGCGCTGATTGGTTAAAACTAAACTCTAC
GGTAATTATGTTTGGTTAGTTGCTCTACTAGTAAAATCGGCGATCGATCG
AATTTAAGTTCATCTATTGTGTTCTATTTGActcgattgatttgattttt
gatatctTGCGATTGACAAAGTCTTGACAATGTGTGTTTTTTTCAATACA
AGATCTACCATAATTATAAACCCCACTACTTCGATCTCTTCGTTAAAACA
ACTTTGATGACCACGAAGTTCACAAACAGGACACAAACAATCACAATCAA
AACAGGtagaaagtaaaataaaattgtCGGGTAAAGCACAGGGATTGTAA
TACCAGCAAAAGCGAAAGCCAATTTTGACATAAATTTGCGAACATTATGT
GTTTTCTCACGTTGATGATACGGAACAAACATTTGGACGAAATTGATGAA
GAGAACGTCGTCAACACTCCATAACAAAGTCAACGCGACTACGATGATCC
CGATGCCGATGATATCAGCGACGATTGTGTATTGTGTTAACCAAGTGAAA
TATAATACTGATGATAAGCCTGCGATCTCGACAATGATCGATATTCCGAT
AAAGATCTCAGGCTGGTAATCAAAACTCACGGTCATAGTCATTAACAAAA
ACATTGCATACACAGTGCCGATGATTGCATATAAAAGCATGACTCCGATT
GTTGATGCTTTTAGACGTTCATACATTAAGAATGGAATAATGAGCTCGAA
TAAGGCTACAATATAGGTATAAACAAACGAAAAACCATTAACAAACCAAG
CAGTGTATTCAAGATCTTTAATATATTCACTATCAATGAATTTATTTGGC
GTGGCGCCCGATGAGGATTTCTCGCGATTGGTTTCTTCTTCATCACTATG
ATCCTTAATGAAGATAGCGATAATAAACTGCATGATCAGGAATAAAACAG
CTGCTGTTAATCCTGGGAAATTACTGGCATCAAAGGTTAATGAACCTAAA
GAGAAATGCATGAACGTGGTCACAATATTGATGCCAGGGGAAAGAATGAC
ACCAAGCACAAAAGCAGCTAAACATTCGATTGTTAGACGTTCGTTTGATA
GTTCAGTGTATTGATGCATCTCTTTCATGAGGACGACGTAGAAGGCGTCA
CCAAGACCAGCCAAGAATCGACCTAAAGCCGGTGCACAAGGTATCATTGA
CAGCGTAAACAATAGATTTCCACAAATCTCAAACATGTTTAAAAACAGCA
CCATTTTTTTCGTATTAAAGTTTAGTTTCTCTACAAGTTTTGCAGACACC
ATTGAACCTAGAGGATATGCAACGTATGTAATTCCATACAAAATACGACT
GACAACTTGCGATTGATCTGACTTGTAAAt
Run BLAST on NCBI

transcript from alignment at sc0000254:298610..301860-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016932 ID=TCONS_00016932|Name=TCONS_00016932|organism=Clytia hemisphaerica|type=transcript|length=3251bp|location=Sequence derived from alignment at sc0000254:298610..301860- (Clytia hemisphaerica)
GCCATTTTTTGCCTTACAAAAAAGTGCGCAGACGGGAAGATATAAAATAA
GCAAGAAAATAACAATTAACAGATTTTTCCCCTAATTACCTGCAATAACA
AAAGATCAATATTAGCAACAATCCAGTCAAAATGATAACATTTTAAAAAT
ATAACCTAACCTAAGTCTAAATCAAATATGAAAACACCATTGAGAACACG
AATCTTTGGACCTTCTCAAAATATTTCTTTCTCCAACACTTTAAAATCCC
ATTCAAGGTTGAAAATTGTAAGGTCGTTAGCCAAAATACAGGGTGTCCGG
AAAAAAAGTATCGAGCTCGAACATGATTCTGAGTAGAAGGTTGTTGTGTG
TGTTGCATGACGTTAAAGTTATTGAGAATTGTTTTTTGTAAAAGTTATTC
ATAGAAGATGACAATTAACATGACACAGAGAGAAACTTTAATAAACATTG
CAAATTTAGTGAAACACACACAGAACTTTCTTTCTATAGAAGTGGTACGA
CTCGATACTTTTTTCCGGACATCCTGTACAAATGATAGAAAATTCTGTAT
CACTTTTTTTGGTCTTTCTCAGGCGCTGATTGGTTAAAACTAAACTCTAC
GGTAATTATGTTTGGTTAGTTGCTCTACTAGTAAAATCGGCGATCGATCG
AATTTAAGTTCATCTATTGTGTTCTATTTGACTCGATTGATTTGATTTTT
GATATCTTGCGATTGACAAAGTCTTGACAATGTGTGTTTTTTTCAATACA
AGATCTACCATAATTATAAACCCCACTACTTCGATCTCTTCGTTAAAACA
ACTTTGATGACCACGAAGTTCACAAACAGGACACAAACAATCACAATCAA
AACAGGTAGAAAGTAAAATAAAATTGTCGGGTAAAGCACAGGGATTGTAA
TACCAGCAAAAGCGAAAGCCAATTTTGACATAAATTTGCGAACATTATGT
GTTTTCTCACGTTGATGATACGGAACAAACATTTGGACGAAATTGATGAA
GAGAACGTCGTCAACACTCCATAACAAAGTCAACGCGACTACGATGATCC
CGATGCCGATGATATCAGCGACGATTGTGTATTGTGTTAACCAAGTGAAA
TATAATACTGATGATAAGCCTGCGATCTCGACAATGATCGATATTCCGAT
AAAGATCTCAGGCTGGTAATCAAAACTCACGGTCATAGTCATTAACAAAA
ACATTGCATACACAGTGCCGATGATTGCATATAAAAGCATGACTCCGATT
GTTGATGCTTTTAGACGTTCATACATTAAGAATGGAATAATGAGCTCGAA
TAAGGCTACAATATAGGTATAAACAAACGAAAAACCATTAACAAACCAAG
CAGTGTATTCAAGATCTTTAATATATTCACTATCAATGAATTTATTTGGC
GTGGCGCCCGATGAGGATTTCTCGCGATTGGTTTCTTCTTCATCACTATG
ATCCTTAATGAAGATAGCGATAATAAACTGCATGATCAGGAATAAAACAG
CTGCTGTTAATCCTGGGAAATTACTGGCATCAAAGGTTAATGAACCTAAA
GAGAAATGCATGAACGTGGTCACAATATTGATGCCAGGGGAAAGAATGAC
ACCAAGCACAAAAGCAGCTAAACATTCGATTGTTAGACGTTCGTTTGATA
GTTCAGTGTATTGATGCATCTCTTTCATGAGGACGACGTAGAAGGCGTCA
CCAAGACCAGCCAAGAATCGACCTAAAGGTATGACAAACAATGAGGTTTA
AGGTTAATCTCTTATCAGATCATTCATTCTTTTCACACTACTTTAGGCGT
ACAAACTTTCTTGCGATTTTCGCAAATTTTAGCCCTTTTCGCGAAAGTAA
ATGTCTTTGAAAATTCTTGAAAGGATCATTTGCAAAAGTTTATGCACGCG
AAAAATTCTTCACAAAATCTGTAACATTTCTAAATTACAATAAAATGTAA
AATTTATGACACTTTTTTAACTTGGCAAGGCAACATAAGTCAAAAGACAA
AAGTTTCACTCCAATTCAAGAAGTATTTTGTCCCTCTTAGCTATTCTTCG
TGAGTAAAATTTTCATTTTTATGTCTTGACTCGCGGAAGTTTATGCTTGC
GAAAAAGATTTTTTGTTCGAATTAGCGAAGATAAATGTCGTGAATTTCGC
GATTTATCGACCTTGTGAAAATTTCTGCTCGCGAAAGTTTGTACGCCTAA
AGTACACTCCGCGTTAAAAGGATGTGGCGAATGTGATTGAAACAGGATTG
TGTGTAAGCTCTGAAACTGTTTACCCTATTACCCATTCAGTTATAAGCCC
AAAGGGCTAGAGTGGTAAAGCTTTTAGAATTTGCTCTTAGCTATTTTTCG
TGTGAAAATTTTAATTTTTATGTCTTGACTCTCGGAAGTTTATGCTCGCA
AAAAAGATTTTTTGTGTTCGAATTAGCGAAGGTAAATGTCGTGAATTTTG
CAATTTTTCAATCTCGCGAAAGTTTGTATGCCTAAAGTACACTCTGCGTT
AAAAGGATGTGGCAAATGTGATTGAAACAGAATCGTGTGTAAGCTCTAAA
ACTAATTACCCATTTACCCATTCAGTTTTAAGCCCAAGGGGCTAGAGTGG
TAAAGCTTTTAAATTTGAGTGTCTCACATTCAGAATGATGGATTGAATCG
AGCGATTTCTTAAATTTCACTTTGCACATTTTTTTATATCCTAAAATAGT
TTTGAGCCTTCAATCCGGCGTTTGTGTGCCATGGGAAATAAGAGGGGAAG
AAAAACCGAGAAATAAGAGTTTCATCTCTAGCCCTTTCAGGACTTTAAAG
GTTTTGTTTTTAAGTAAAAGTGATATCGTTTGCTTACTCGTCAATTTTAA
TTCACAAGCTTTTTCACGTTGGCTTTGACACGGATGTGGAGCAAGATTGG
TCAGAAAGAGGGAAATAATAACTTTTTTTGTTTATATCAGCATAATATAA
CAATAGCAAGACACTTTCCTGATATGAAATATGTGTCTGATATGAAGCGG
AAACACTTATGTAGAAATAAAACCTTTAACTCAATGAACTTACCTACAGC
CGGTGCACAAGGTATCATTGACAGCGTAAACAATAGATTTCCACAAATCT
CAAACATGTTTAAAAACAGCACCATTTTTTTCGTATTAAAGTTTAGTTTC
TCTACAAGTTTTGCAGACACCATTGAACCTAGAGGATATGCAACGTATGT
AATTCCATACAAAATACGACTGACAACTTGCGATTGATCTGACTTGTAAA
T
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009483XLOC_009483Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016932-exon-sc0000254-1575043694:300133..301860TCONS_00016932-exon-sc0000254-1575043694:300133..301860Clytia hemisphaericaexon
TCONS_00016932-exon-sc0000254-1575043694:298610..298811TCONS_00016932-exon-sc0000254-1575043694:298610..298811Clytia hemisphaericaexon
TCONS_00016932-exon-sc0000254-1510915933:300133..301860TCONS_00016932-exon-sc0000254-1510915933:300133..301860Clytia hemisphaericaexon
TCONS_00016932-exon-sc0000254-1510915933:298610..298811TCONS_00016932-exon-sc0000254-1510915933:298610..298811Clytia hemisphaericaexon
TCONS_00016932-exon-sc0000254-1491911889:300133..301860TCONS_00016932-exon-sc0000254-1491911889:300133..301860Clytia hemisphaericaexon
TCONS_00016932-exon-sc0000254-1491911889:298610..298811TCONS_00016932-exon-sc0000254-1491911889:298610..298811Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000254supercontigsc0000254:298610..301860 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.78779	7.48599	2.68192	2.74102	42.3261	22.9881	26.1993	28.8997	3.12207	3.63327	0.350884	0.778359	1.43092	0.000702634	5.29	3.99448	3.66283	3.25017	2.84366	1.91161	4.62665	4.78287	8.33856	6.05973	3.74017	4.02279	0.0186765	2.45946	3.66748	5.24256
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR020846MFS_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016932 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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