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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016929 ID=TCONS_00016929|Name=TCONS_00016929|organism=Clytia hemisphaerica|type=transcript|length=2522bpRun BLAST on NCBI protein sequence of TCONS_00016929-protein >TCONS_00016929-protein ID=TCONS_00016929-protein|Name=TCONS_00016929-protein|organism=Clytia hemisphaerica|type=polypeptide|length=728bp IGSFKMEKEKGNTTPGKQRKCFSMDDTTIEKLIHQERLSQQTKLLNMSMNRun BLAST on NCBI transcript from alignment at sc0000254:83804..101614- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00016929 ID=TCONS_00016929|Name=TCONS_00016929|organism=Clytia hemisphaerica|type=transcript|length=17811bp|location=Sequence derived from alignment at sc0000254:83804..101614- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000254:83804..101614- >TCONS_00016929 ID=TCONS_00016929|Name=TCONS_00016929|organism=Clytia hemisphaerica|type=CDS|length=37179bp|location=Sequence derived from alignment at sc0000254:83804..101614- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00016929 vs. Swiss-Prot (Human)
Match: FBXW7 (F-box/WD repeat-containing protein 7 OS=Homo sapiens GN=FBXW7 PE=1 SV=1) HSP 1 Score: 260.381 bits (664), Expect = 1.202e-74 Identity = 155/449 (34.52%), Postives = 246/449 (54.79%), Query Frame = 2
Query: 848 VEPPLFKKRADVMMQWFSGFSNEQKNIFIQKILESSELPQMHMLSLKMENNLHKNCPLNCRDMLQWLPENVVYQILDQLDPISLSNACQVNRVWHEYGMHHHLWKKFCRHPDYQLSSQRQREQILKFTNVNGTVRWREVFVERYCLRRNWMTGRCK-VKTLTGHTQGV-SCVQFDQSRIVSGSSDKTIRVWDLTSSSQDPVLHLVGHSGTVRCLQLIGNRLVSGSTDTTIKVWDLSVGSDWNMAGCRVTMIGHFDTVRCLQVDADKVISGSYDKTLKVWDLKTGNCKLTLRGHSEAVLCVQFDDQKIVSGSSDKTIKVWSLFTGVCLSTFQGHDDAVTCLQFNHSHVISGSLDCTLKFWNLHSGKCIGTIDWIRSEGHTRVVRCLQADRWKIVSAGDDKTLKIWCLESGERFVTL---HKHTDGVTCLRFDDFMIVSGSYDKTVKVWDF 2179
V+PP + ++ F +S +K + + ++++S E Q+ + +E P RD + LP+ + +L L+P L A Q R W + LW++ C+ +R +++K ++ W+ ++ ++ + NW G K K L GH V +C+QF +RIVSGS D T++VW ++ + + LVGH+G V Q+ N ++SGSTD T+KVW+ G C T+ GH TVRC+ + +V+SGS D TL+VWD++TG C L GH AV CVQ+D +++VSG+ D +KVW T CL T QGH + V LQF+ HV+SGSLD +++ W++ +G CI T+ GH + ++ +VS D T+KIW +++G+ TL +KH VTCL+F+ +++ S D TVK+WD
Sbjct: 228 VQPPTGLQE---WLKMFQSWSGPEKLLALDELIDSCEPTQVKHMMQVIE-------PQFQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVIKPGFIHSP--WKSAYIRQHRIDTNWRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVW--SAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGE------CIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTL-----TGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDL 651 HSP 2 Score: 185.652 bits (470), Expect = 2.905e-49 Identity = 107/249 (42.97%), Postives = 147/249 (59.04%), Query Frame = 2
Query: 1292 NWMTGRCKVKTLTGHTQGVSCVQFDQSRIVSGSSDKTIRVWDLTSSSQDPVLH-LVGHSGTVRCLQLIGNRLVSGSTDTTIKVWDLSVGSDWNMAGCRVTMIGHFDTVRCLQVDADKVISGSYDKTLKVWDLKTGNCKLTLRGHSEAVLCVQFDDQKIVSGSSDKTIKVWSLFTGVCLSTFQG---HDDAVTCLQFNHSHVISGSLDCTLKFWNLHSGKCIGTIDWIRSEGHTRVVRCLQADRWKIVSA 2026
N TG C + TL GHT V C+ + R+VSGS D T+RVWD+ + LH L+GH VRC+Q G R+VSG+ D +KVWD + C T+ GH + V LQ D V+SGS D +++VWD++TGNC TL GH ++ D +VSG++D T+K+W + TG CL T QG H AVTCLQFN + VI+ S D T+K W+L +G+ I + + S G VV ++A K+V A
Sbjct: 447 NAETGEC-IHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQ---CLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETET------CLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCA 685 The following BLAST results are available for this feature:
BLAST of TCONS_00016929 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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