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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016915 ID=TCONS_00016915|Name=TCONS_00016915|organism=Clytia hemisphaerica|type=transcript|length=3139bpRun BLAST on NCBI protein sequence of TCONS_00016915-protein >TCONS_00016915-protein ID=TCONS_00016915-protein|Name=TCONS_00016915-protein|organism=Clytia hemisphaerica|type=polypeptide|length=654bp VIFDCKDFKMVHIEDPCSLANTQDFVAGHLSLTISKVNFETKQLHCLSVQRun BLAST on NCBI transcript from alignment at sc0000254:122820..276308+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00016915 ID=TCONS_00016915|Name=TCONS_00016915|organism=Clytia hemisphaerica|type=transcript|length=153489bp|location=Sequence derived from alignment at sc0000254:122820..276308+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000254:122820..276308+ >TCONS_00016915 ID=TCONS_00016915|Name=TCONS_00016915|organism=Clytia hemisphaerica|type=CDS|length=39300bp|location=Sequence derived from alignment at sc0000254:122820..276308+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00016915 vs. Swiss-Prot (Human)
Match: LKHA4 (Leukotriene A-4 hydrolase OS=Homo sapiens GN=LTA4H PE=1 SV=2) HSP 1 Score: 489.574 bits (1259), Expect = 1.130e-159 Identity = 276/649 (42.53%), Postives = 389/649 (59.94%), Query Frame = 1
Query: 28 MVHIEDPCSLANTQDFV-AGHLSLTISKVNFETKQL---HCLSVQKFKRFGNAPILILDTRDLIINNVSIDGRNVQYSLGEEVQYLGKPLNIHVPNNYVEDSAIHEFDVTVDYQTSPNASAIQWLEPEQTQSKKHPFLFTQCQSVHCRSMLPCQDSPGLKFTYDAKVTVPKELTAVMSAI---QKPPVDTPDGMLFGFEQTVPIPSYLVALAIGYLESRPIGESSAVWCEKVADSLQPEKLWVEICQEEFSQVDQMIQAGVDLLGPYQWGRYDILVLPPSFPYGGMENPCLTFATPTIVARDKSLVSVVAHEITHSWTGNLVTNINWEHFWLNEGFTRFVEGKIMQEIEKDSHGGDLQKGIEYKEFMAISGIQRLTDSVKTYEADGKLRFTKLVPSLKGESPDDAFSTVPYEKGYTFLYYIENLIEGGEKVFNGFLRHYIDTFQRRVVTTADFKNELEKYFADKPKDLEAIKNIAWDRWLYKEGMPIVDNNYDDTYAKETKSLAQRWLEA---DLSTEFDPAEYNAFITLQKIDFLTKLFLLPGEDPSQYLALEMTKKLANTYDLLTETNAEIVFQFQRLAIRSKWDDIVFNDVKNFMTSVGRMKFCRPLYVLLNKNQESGYRQFAIDTFLANESFYHPIAAQMIRQDL 1944
M I D CSLA+ HL L S V+F + L L+VQ + N L+LDT+DL I V I+G+ V+Y+LGE Y G P+ I +P + S E + + ++TSP +SA+QWL PEQT K+HP+LF+QCQ++HCR++LPCQD+P +K TY A+V+VPKEL A+MSAI + P + P ++ F Q VPIP YL+AL +G LESR IG + VW EK VE EFS+ + M++ DL GPY WG+YD+LVLPPSFPYGGMENPCLTF TPT++A DKSL +V+AHEI+HSWTGNLVTN W+HFWLNEG T ++E I + G +++ F A+ G L +SVKT+ FTKLV L PD A+S+VPYEKG+ L+Y+E L+ GG ++F GFL+ Y++ F + +TT D+K+ L YF DK ++ + + W+ WLY G+P + NYD T +L+QRW+ A DL++ F+ + + Q +FL + L L K++ Y+ N+EI F++ RL I+SKW+D + +K T GRMKF RPL+ L +S A+ T+ +++ HP+ A ++ +DL
Sbjct: 1 MPEIVDTCSLASPASVCRTKHLHLRCS-VDFTRRTLTGTAALTVQS--QEDNLRSLVLDTKDLTIEKVVINGQEVKYALGERQSYKGSPMEISLP---IALSKNQEIVIEISFETSPKSSALQWLTPEQTSGKEHPYLFSQCQAIHCRAILPCQDTPSVKLTYTAEVSVPKELVALMSAIRDGETPDPEDPSRKIYKFIQKVPIPCYLIALVVGALESRQIGPRTLVWSEKEQ---------VEKSAYEFSETESMLKIAEDLGGPYVWGQYDLLVLPPSFPYGGMENPCLTFVTPTLLAGDKSLSNVIAHEISHSWTGNLVTNKTWDHFWLNEGHTVYLERHICGRL----------FGEKFRHFNALGGWGELQNSVKTFGETHP--FTKLVVDLTDIDPDVAYSSVPYEKGFALLFYLEQLL-GGPEIFLGFLKAYVEKFSYKSITTDDWKDFLYSYFKDK---VDVLNQVDWNAWLYSPGLPPIKPNYDMTLTNACIALSQRWITAKEDDLNS-FNATDLKDLSSHQLNEFLAQTL------QRAPLPLGHIKRMQEVYNFNAINNSEIRFRWLRLCIQSKWEDAIPLALK-MATEQGRMKFTRPLFKDLAAFDKS--HDQAVRTYQEHKASMHPVTAMLVGKDL 608 The following BLAST results are available for this feature:
BLAST of TCONS_00016915 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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