TCONS_00016907 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016907
Unique NameTCONS_00016907
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length221

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016907 ID=TCONS_00016907|Name=TCONS_00016907|organism=Clytia hemisphaerica|type=transcript|length=221bp
AAAACAGTCCATCCAATCTTGTCCAGCAACTGTTGACGAGCATCCACTGT
TGAGAACGGCAGCATTGGTAGATTCTGTTAACAACACTGTCATTTCATTA
TTATTCTGGCCCGTAAATAGAGCAAATTGTTCAGTCACCATGTAGAATGA
ATGTTCAAGATTTTCATAAGCATGAGGGCAATCTTTCACGAAATGTAATG
TTGAATCGCATGCCATACAGC
Run BLAST on NCBI

transcript from alignment at sc0000253:358086..358306

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016907 ID=TCONS_00016907|Name=TCONS_00016907|organism=Clytia hemisphaerica|type=transcript|length=221bp|location=Sequence derived from alignment at sc0000253:358086..358306 (Clytia hemisphaerica)
GCTGTATGGCATGCGATTCAACATTACATTTCGTGAAAGATTGCCCTCAT
GCTTATGAAAATCTTGAACATTCATTCTACATGGTGACTGAACAATTTGC
TCTATTTACGGGCCAGAATAATAATGAAATGACAGTGTTGTTAACAGAAT
CTACCAATGCTGCCGTTCTCAACAGTGGATGCTCGTCAACAGTTGCTGGA
CAAGATTGGATGGACTGTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009468XLOC_009468Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016907-exon-sc0000253-1491911889:358086..358306TCONS_00016907-exon-sc0000253-1491911889:358086..358306Clytia hemisphaericaexon
TCONS_00016907-exon-sc0000253-1510915933:358086..358306TCONS_00016907-exon-sc0000253-1510915933:358086..358306Clytia hemisphaericaexon
TCONS_00016907-exon-sc0000253-1575043694:358086..358306TCONS_00016907-exon-sc0000253-1575043694:358086..358306Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000253supercontigsc0000253:358086..358306 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.43596	4.7509	2.75812	1.3492	11.4976	20.767	17.225	26.3877	8.21096	7.62795	1.23398	8.11169	10.5305	10.9361	7.60771	7.42204	8.22901	7.49731	14.2422	17.6131	5.88807	12.0624	2.79303	3.8089	19.6154	25.6759	3.34019	0	0	2.75467
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016907 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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